sorgsd

Variation ID : sbi33825389

Variation Detail

Variation ID	sbi33825389
Type	INDEL
Position	Chr01 13547-13551
Ref /Alleles	TTTTA/ T
MAF	T: 0.014
5' Flank	GGTGAAAATTTAATTTTAGCAGTGTTTTTT
3' Flank	AAATTCTTGTGGGTGCATTTGCACCCACAA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	N\|N
3	107	Improved	TTTTA\|TTTTA
4	11	Improved	N\|N
5	110	Improved	TTTTA\|TTTTA
6	123	Landrace	N\|N
7	131	Improved	TTTTA\|TTTTA
8	132	Improved	N\|N
9	135	Improved	N\|N
10	137	Improved	TTTTA\|TTTTA
11	138	Improved	TTTTA\|TTTTA
12	14	Improved	TTTTA\|TTTTA
13	140	Improved	TTTTA\|TTTTA
14	141	Improved	N\|N
15	144	Improved	N\|N
16	150	Improved	N\|N
17	154	Improved	N\|N
18	159	Landrace	TTTTA\|TTTTA
19	16	Improved	TTTTA\|TTTTA
20	161	Landrace	TTTTA\|TTTTA
21	167	Improved	TTTTA\|TTTTA
22	168	Improved	TTTTA\|TTTTA
23	170	Improved	TTTTA\|TTTTA
24	173	Improved	N\|N
25	175	Improved	N\|N
26	176	Improved	TTTTA\|TTTTA
27	182	Landrace	N\|N
28	186	Improved	TTTTA\|TTTTA
29	190	Improved	TTTTA\|TTTTA
30	192	Improved	TTTTA\|TTTTA
31	194	Improved	N\|N
32	195	Improved	TTTTA\|TTTTA
33	197	Improved	N\|N
34	J22	Landrace	N\|N
35	J26	Landrace	TTTTA\|TTTTA
36	J5	Landrace	N\|N
37	J50	Landrace	TTTTA\|TTTTA
38	2001	Landrace	N\|N
39	2005	Improved	N\|N
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	N\|N
43	2010	Landrace	N\|N
44	2016	Improved	TTTTA\|TTTTA
45	2019	Improved	TTTTA\|TTTTA
46	202	Improved	TTTTA\|TTTTA
47	2021	Improved	N\|N
48	2023	Improved	N\|N
49	2026	Improved	TTTTA\|TTTTA
50	2029	Improved	N\|N
51	2030	Landrace	N\|N
52	2031	Landrace	TTTTA\|TTTTA
53	2036	Improved	TTTTA\|TTTTA
54	2037	Improved	N\|N
55	2038	Improved	N\|N
56	2039	Improved	N\|N
57	204	Improved	TTTTA\|TTTTA
58	2042	Improved	TTTTA\|TTTTA
59	2043	Improved	N\|N
60	2048	Improved	TTTTA\|TTTTA
61	2049	Improved	TTTTA\|TTTTA
62	205	Improved	TTTTA\|TTTTA
63	2050	Improved	N\|N
64	2052	Improved	TTTTA\|TTTTA
65	2054	Improved	N\|N
66	2056	Improved	TTTTA\|TTTTA
67	2059	Improved	N\|N
68	206	Improved	TTTTA\|TTTTA
69	2064	Improved	N\|N
70	2065	Improved	TTTTA\|TTTTA
71	2067	Improved	TTTTA\|TTTTA
72	2068	Improved	N\|N
73	2069	Improved	N\|N
74	2071	Improved	N\|N
75	2074	Improved	TTTTA\|TTTTA
76	2075	Improved	TTTTA\|TTTTA
77	2076	Improved	TTTTA\|TTTTA
78	2080	Improved	TTTTA\|TTTTA
79	2081	Improved	TTTTA\|TTTTA
80	2082	Improved	N\|N
81	2086	Improved	N\|N
82	2088	Improved	TTTTA\|TTTTA
83	260	Wild sorghum	TTTTA\|TTTTA
84	261	Improved	TTTTA\|TTTTA
85	262	Improved	N\|N
86	263	Improved	TTTTA\|TTTTA
87	286	Improved	TTTTA\|TTTTA
88	29	Improved	N\|N
89	3	Improved	TTTTA\|TTTTA
90	302546	S.propinquum	N\|N
91	31	Improved	TTTTA\|TTTTA
92	32	Improved	TTTTA\|TTTTA
93	34	Improved	TTTTA\|TTTTA
94	346	Landrace	N\|N
95	348	Wild sorghum	N\|N
96	353	Wild sorghum	TTTTA\|TTTTA
97	355	Wild sorghum	N\|N
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	N\|N
100	367	Landrace	TTTTA\|TTTTA
101	s37	S.propinquum	T\|T
102	s38	S.propinquum	T\|T
103	370	Landrace	TTTTA\|TTTTA
104	377	Wild sorghum	N\|N
105	392	Wild sorghum	TTTTA\|TTTTA
106	394	Wild sorghum	N\|N
107	40	Improved	TTTTA\|TTTTA
108	42	Improved	N\|N
109	43	Improved	TTTTA\|TTTTA
110	45	Improved	N\|N
111	47	Improved	N\|N
112	48	Improved	N\|N
113	51	Improved	N\|N
114	53	Improved	N\|N
115	56	Improved	TTTTA\|TTTTA
116	61	Improved	TTTTA\|TTTTA
117	62	Improved	TTTTA\|TTTTA
118	66	Landrace	TTTTA\|TTTTA
119	67	Improved	N\|N
120	68	Improved	TTTTA\|TTTTA
121	70	Improved	N\|N
122	73	Improved	TTTTA\|TTTTA
123	75	Improved	TTTTA\|TTTTA
124	88	Improved	N\|N
125	89	Improved	N\|N
126	91	Improved	N\|N
127	92	Improved	N\|N
128	93	Improved	N\|N
129	94	Improved	N\|N
130	95	Improved	N\|N
131	96	Improved	N\|N
132	97	Improved	N\|N
133	s1	Improved	TTTTA\|TTTTA
134	s36	Wild sorghum	N\|N
135	s2	Landrace	TTTTA\|TTTTA
136	s3	Improved	TTTTA\|TTTTA
137	s32	Improved	TTTTA\|TTTTA
138	s43	Weedy	TTTTA\|TTTTA
139	s40	Landrace	N\|N
140	s41	Weedy	N\|N
141	s39	Landrace	TTTTA\|TTTTA
142	s42	Landrace	N\|N
143	s47	Improved	TTTTA\|TTTTA
144	s5	Landrace	N\|N
145	GW102	Landrace	TTTTA\|TTTTA
146	GW103	Landrace	N\|N
147	GW104	Landrace	TTTTA\|TTTTA
148	GW105	Landrace	N\|N
149	GW16	Landrace	N\|N
150	GW2	Landrace	TTTTA\|TTTTA
151	GW34	Landrace	N\|N
152	GW37	Landrace	TTTTA\|TTTTA
153	GW58	Landrace	N\|N
154	GW59	Landrace	N\|N
155	GW9	Landrace	TTTTA\|TTTTA
156	s4	Weedy	TTTTA\|TTTTA
157	s6	Improved	TTTTA\|TTTTA
158	s7	Landrace	TTTTA\|TTTTA
159	s8	Landrace	TTTTA\|TTTTA
160	s9	Landrace	TTTTA\|TTTTA
161	J101	Landrace	N\|N
162	J103	Improved	TTTTA\|TTTTA
163	J112	Landrace	N\|N
164	J113	Improved	TTTTA\|TTTTA
165	J129	Improved	TTTTA\|TTTTA
166	J130	Improved	TTTTA\|TTTTA
167	J136	Improved	TTTTA\|TTTTA
168	J152	Improved	TTTTA\|TTTTA
169	J2	Landrace	TTTTA\|TTTTA
170	J20	Landrace	TTTTA\|TTTTA
171	J4	Landrace	TTTTA\|TTTTA
172	J42	Landrace	TTTTA\|TTTTA
173	J44	Landrace	TTTTA\|TTTTA
174	J49	Landrace	N\|N
175	J52	Landrace	TTTTA\|TTTTA
176	J53	Landrace	N\|N
177	J54	Landrace	N\|N
178	J57	Landrace	TTTTA\|TTTTA
179	J59	Landrace	TTTTA\|TTTTA
180	J64	Landrace	TTTTA\|TTTTA
181	J66	Landrace	N\|N
182	J67	Landrace	N\|N
183	J69	Landrace	TTTTA\|TTTTA
184	J87	Landrace	N\|N
185	J99	Landrace	TTTTA\|TTTTA
186	s45	Landrace	TTTTA\|TTTTA
187	s11	Improved	N\|N
188	s10	Improved	TTTTA\|TTTTA
189	s46	Improved	TTTTA\|TTTTA
190	s12	Improved	TTTTA\|TTTTA
191	s13	Landrace	TTTTA\|TTTTA
192	MHMD	Landrace	N\|N
193	s14	Improved	TTTTA\|TTTTA
194	s15	Improved	TTTTA\|TTTTA
195	s34	Weedy	TTTTA\|TTTTA
196	s33	Wild sorghum	N\|N
197	s21	Wild sorghum	TTTTA\|TTTTA
198	s16	Wild sorghum	TTTTA\|TTTTA
199	s44	Improved	TTTTA\|TTTTA
200	s35	Landrace	N\|N
201	s31	Wild sorghum	TTTTA\|TTTTA
202	s17	Improved	TTTTA\|TTTTA
203	s18	Improved	TTTTA\|TTTTA
204	s20	Improved	TTTTA\|TTTTA
205	s19	Improved	TTTTA\|TTTTA
206	s22	Landrace	N\|N
207	s23	Landrace	N\|N
208	s24	Landrace	N\|N
209	s25	Landrace	TTTTA\|TTTTA
210	s26	Landrace	N\|N
211	s27	Landrace	N\|N
212	s28	Landrace	TTTTA\|TTTTA
213	s29	Landrace	TTTTA\|TTTTA
214	s30	Landrace	TTTTA\|TTTTA
215	SL25	Wild sorghum	N\|N
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	TTTTA\|TTTTA
218	SL109	Wild sorghum	N\|N
219	SL12	Wild sorghum	N\|N
220	SL129	Wild sorghum	N\|N
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	TTTTA\|TTTTA
223	SL136	Wild sorghum	N\|N
224	SL137	Wild sorghum	N\|N
225	SL138	Wild sorghum	TTTTA\|TTTTA
226	SL140	Wild sorghum	N\|N
227	SL141	Wild sorghum	N\|N
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	N\|N
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	N\|N
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	TTTTA\|TTTTA
238	SL49	Wild sorghum	N\|N
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	N\|N
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	N\|N
244	s48	Improved	TTTTA\|TTTTA
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	N\|N
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	N\|N
249	WSC5	Landrace	N\|N
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	TTTTA\|TTTTA
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	TTTTA\|TTTTA
254	WSC6	Landrace	N\|N
255	WSC61	Landrace	TTTTA\|TTTTA
256	WSC71	Improved	TTTTA\|TTTTA
257	WSC72	Landrace	TTTTA\|TTTTA
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	TTTTA\|TTTTA
260	WSC99	Landrace	N\|N
261	WSC100	Landrace	N\|N
262	WSC104	Landrace	N\|N
263	WSC105	Landrace	TTTTA\|TTTTA
264	WSC12	Landrace	TTTTA\|TTTTA
265	WSC13	Landrace	TTTTA\|TTTTA
266	WSC16	Landrace	N\|N
267	WSC17	Landrace	TTTTA\|TTTTA
268	WSC18	Landrace	TTTTA\|TTTTA
269	WSC20	Landrace	TTTTA\|TTTTA
270	WSC24	Landrace	TTTTA\|TTTTA
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	N\|N
273	WSC31	Landrace	TTTTA\|TTTTA
274	WSC32	Landrace	N\|N
275	WSC34	Landrace	TTTTA\|TTTTA
276	WSC38	Landrace	TTTTA\|TTTTA
277	WSC39	Improved	N\|N
278	WSC40	Landrace	TTTTA\|TTTTA
279	WSC54	Landrace	N\|N
280	WSC56	Landrace	N\|N
281	WSC59	Landrace	N\|N
282	WSC68	Landrace	TTTTA\|TTTTA
283	WSC70	Landrace	TTTTA\|TTTTA
284	WSC73	Landrace	TTTTA\|TTTTA
285	WSC81	Landrace	N\|N
286	WSC85	Improved	N\|N
287	WSC91	Landrace	N\|N
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	TTTTA\|TTTTA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825389	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

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