sorgsd

Variation ID : sbi33825391

Variation Detail

Variation ID	sbi33825391
Type	INDEL
Position	Chr01 13549-13551
Ref /Alleles	TTA/ T or *
MAF	T: 0.328
5' Flank	TGAAAATTTAATTTTAGCAGTGTTTTTTTT
3' Flank	AAATTCTTGTGGGTGCATTTGCACCCACAA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	T\|T
2	103	Improved	T\|T
3	107	Improved	TTA\|TTA
4	11	Improved	T\|T
5	110	Improved	TTA\|TTA
6	123	Landrace	T\|T
7	131	Improved	TTA\|TTA
8	132	Improved	TTA\|T
9	135	Improved	T\|T
10	137	Improved	TTA\|TTA
11	138	Improved	TTA\|TTA
12	14	Improved	TTA\|TTA
13	140	Improved	TTA\|TTA
14	141	Improved	T\|T
15	144	Improved	T\|T
16	150	Improved	T\|T
17	154	Improved	\|
18	159	Landrace	TTA\|TTA
19	16	Improved	TTA\|TTA
20	161	Landrace	TTA\|TTA
21	167	Improved	TTA\|TTA
22	168	Improved	TTA\|TTA
23	170	Improved	TTA\|TTA
24	173	Improved	\|
25	175	Improved	T\|T
26	176	Improved	TTA\|TTA
27	182	Landrace	N\|N
28	186	Improved	TTA\|TTA
29	190	Improved	TTA\|TTA
30	192	Improved	TTA\|TTA
31	194	Improved	N\|N
32	195	Improved	TTA\|TTA
33	197	Improved	N\|N
34	J22	Landrace	N\|N
35	J26	Landrace	TTA\|TTA
36	J5	Landrace	N\|N
37	J50	Landrace	TTA\|TTA
38	2001	Landrace	N\|N
39	2005	Improved	N\|N
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	T\|T
43	2010	Landrace	T\|T
44	2016	Improved	TTA\|TTA
45	2019	Improved	TTA\|TTA
46	202	Improved	TTA\|TTA
47	2021	Improved	N\|N
48	2023	Improved	N\|N
49	2026	Improved	TTA\|TTA
50	2029	Improved	N\|N
51	2030	Landrace	T\|T
52	2031	Landrace	TTA\|TTA
53	2036	Improved	TTA\|TTA
54	2037	Improved	T\|T
55	2038	Improved	T\|T
56	2039	Improved	N\|N
57	204	Improved	TTA\|T
58	2042	Improved	TTA\|TTA
59	2043	Improved	T\|T
60	2048	Improved	TTA\|TTA
61	2049	Improved	TTA\|TTA
62	205	Improved	TTA\|TTA
63	2050	Improved	T\|T
64	2052	Improved	TTA\|TTA
65	2054	Improved	N\|N
66	2056	Improved	TTA\|TTA
67	2059	Improved	T\|T
68	206	Improved	TTA\|TTA
69	2064	Improved	N\|N
70	2065	Improved	TTA\|TTA
71	2067	Improved	TTA\|TTA
72	2068	Improved	N\|N
73	2069	Improved	N\|N
74	2071	Improved	T\|T
75	2074	Improved	TTA\|TTA
76	2075	Improved	TTA\|TTA
77	2076	Improved	TTA\|TTA
78	2080	Improved	TTA\|TTA
79	2081	Improved	TTA\|TTA
80	2082	Improved	N\|N
81	2086	Improved	N\|N
82	2088	Improved	TTA\|TTA
83	260	Wild sorghum	TTA\|TTA
84	261	Improved	TTA\|TTA
85	262	Improved	N\|N
86	263	Improved	TTA\|TTA
87	286	Improved	TTA\|TTA
88	29	Improved	\|
89	3	Improved	TTA\|TTA
90	302546	S.propinquum	N\|N
91	31	Improved	TTA\|T
92	32	Improved	TTA\|TTA
93	34	Improved	TTA\|*
94	346	Landrace	N\|N
95	348	Wild sorghum	N\|N
96	353	Wild sorghum	TTA\|TTA
97	355	Wild sorghum	N\|N
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	N\|N
100	367	Landrace	TTA\|TTA
101	s37	S.propinquum	\|
102	s38	S.propinquum	\|
103	370	Landrace	TTA\|TTA
104	377	Wild sorghum	N\|N
105	392	Wild sorghum	TTA\|TTA
106	394	Wild sorghum	N\|N
107	40	Improved	TTA\|TTA
108	42	Improved	N\|N
109	43	Improved	TTA\|*
110	45	Improved	T\|T
111	47	Improved	N\|N
112	48	Improved	N\|N
113	51	Improved	N\|N
114	53	Improved	T\|T
115	56	Improved	TTA\|TTA
116	61	Improved	TTA\|TTA
117	62	Improved	TTA\|TTA
118	66	Landrace	TTA\|TTA
119	67	Improved	N\|N
120	68	Improved	TTA\|TTA
121	70	Improved	N\|N
122	73	Improved	TTA\|TTA
123	75	Improved	TTA\|TTA
124	88	Improved	T\|T
125	89	Improved	T\|T
126	91	Improved	T\|T
127	92	Improved	T\|T
128	93	Improved	T\|T
129	94	Improved	T\|T
130	95	Improved	N\|N
131	96	Improved	T\|T
132	97	Improved	T\|T
133	s1	Improved	TTA\|TTA
134	s36	Wild sorghum	N\|N
135	s2	Landrace	TTA\|TTA
136	s3	Improved	TTA\|TTA
137	s32	Improved	TTA\|TTA
138	s43	Weedy	TTA\|TTA
139	s40	Landrace	T\|T
140	s41	Weedy	T\|T
141	s39	Landrace	TTA\|TTA
142	s42	Landrace	T\|T
143	s47	Improved	TTA\|TTA
144	s5	Landrace	T\|T
145	GW102	Landrace	TTA\|TTA
146	GW103	Landrace	T\|T
147	GW104	Landrace	TTA\|TTA
148	GW105	Landrace	T\|T
149	GW16	Landrace	N\|N
150	GW2	Landrace	TTA\|TTA
151	GW34	Landrace	N\|N
152	GW37	Landrace	TTA\|TTA
153	GW58	Landrace	T\|T
154	GW59	Landrace	N\|N
155	GW9	Landrace	TTA\|TTA
156	s4	Weedy	TTA\|TTA
157	s6	Improved	TTA\|TTA
158	s7	Landrace	TTA\|TTA
159	s8	Landrace	TTA\|TTA
160	s9	Landrace	TTA\|TTA
161	J101	Landrace	\|
162	J103	Improved	TTA\|TTA
163	J112	Landrace	T\|T
164	J113	Improved	TTA\|TTA
165	J129	Improved	TTA\|TTA
166	J130	Improved	TTA\|TTA
167	J136	Improved	TTA\|TTA
168	J152	Improved	TTA\|TTA
169	J2	Landrace	TTA\|TTA
170	J20	Landrace	TTA\|TTA
171	J4	Landrace	TTA\|TTA
172	J42	Landrace	TTA\|TTA
173	J44	Landrace	TTA\|TTA
174	J49	Landrace	N\|N
175	J52	Landrace	TTA\|TTA
176	J53	Landrace	N\|N
177	J54	Landrace	N\|N
178	J57	Landrace	TTA\|TTA
179	J59	Landrace	TTA\|TTA
180	J64	Landrace	TTA\|TTA
181	J66	Landrace	N\|N
182	J67	Landrace	TTA\|TTA
183	J69	Landrace	TTA\|TTA
184	J87	Landrace	N\|N
185	J99	Landrace	TTA\|TTA
186	s45	Landrace	TTA\|TTA
187	s11	Improved	T\|T
188	s10	Improved	TTA\|TTA
189	s46	Improved	TTA\|TTA
190	s12	Improved	TTA\|TTA
191	s13	Landrace	TTA\|TTA
192	MHMD	Landrace	T\|T
193	s14	Improved	TTA\|TTA
194	s15	Improved	TTA\|TTA
195	s34	Weedy	T\|T
196	s33	Wild sorghum	T\|T
197	s21	Wild sorghum	TTA\|TTA
198	s16	Wild sorghum	TTA\|TTA
199	s44	Improved	TTA\|TTA
200	s35	Landrace	T\|T
201	s31	Wild sorghum	TTA\|TTA
202	s17	Improved	TTA\|TTA
203	s18	Improved	TTA\|TTA
204	s20	Improved	TTA\|TTA
205	s19	Improved	TTA\|TTA
206	s22	Landrace	T\|T
207	s23	Landrace	T\|T
208	s24	Landrace	T\|T
209	s25	Landrace	TTA\|TTA
210	s26	Landrace	T\|T
211	s27	Landrace	T\|T
212	s28	Landrace	TTA\|TTA
213	s29	Landrace	TTA\|TTA
214	s30	Landrace	TTA\|TTA
215	SL25	Wild sorghum	\|
216	SL105	Wild sorghum	T\|T
217	SL108	Wild sorghum	T\|T
218	SL109	Wild sorghum	T\|T
219	SL12	Wild sorghum	T\|T
220	SL129	Wild sorghum	T\|T
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	TTA\|T
223	SL136	Wild sorghum	\|
224	SL137	Wild sorghum	T\|T
225	SL138	Wild sorghum	TTA\|TTA
226	SL140	Wild sorghum	T\|T
227	SL141	Wild sorghum	T\|T
228	SL19	Wild sorghum	TTA\|TTA
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	\|
231	SL35	Wild sorghum	T\|T
232	SL36	Wild sorghum	T\|T
233	SL37	Wild sorghum	T\|T
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	T\|T
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	TTA\|TTA
238	SL49	Wild sorghum	T\|T
239	SL51	Wild sorghum	T\|T
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	T\|T
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	T\|T
244	s48	Improved	TTA\|TTA
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	T\|T
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	T\|T
249	WSC5	Landrace	N\|N
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	TTA\|TTA
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	TTA\|TTA
254	WSC6	Landrace	N\|N
255	WSC61	Landrace	TTA\|TTA
256	WSC71	Improved	TTA\|TTA
257	WSC72	Landrace	TTA\|TTA
258	WSC79	Landrace	T\|T
259	WSC94	Landrace	TTA\|TTA
260	WSC99	Landrace	T\|T
261	WSC100	Landrace	\|
262	WSC104	Landrace	\|
263	WSC105	Landrace	TTA\|TTA
264	WSC12	Landrace	TTA\|TTA
265	WSC13	Landrace	TTA\|TTA
266	WSC16	Landrace	N\|N
267	WSC17	Landrace	TTA\|TTA
268	WSC18	Landrace	TTA\|TTA
269	WSC20	Landrace	TTA\|TTA
270	WSC24	Landrace	TTA\|TTA
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	N\|N
273	WSC31	Landrace	TTA\|TTA
274	WSC32	Landrace	T\|T
275	WSC34	Landrace	TTA\|TTA
276	WSC38	Landrace	TTA\|TTA
277	WSC39	Improved	N\|N
278	WSC40	Landrace	TTA\|TTA
279	WSC54	Landrace	\|
280	WSC56	Landrace	T\|T
281	WSC59	Landrace	T\|T
282	WSC68	Landrace	TTA\|TTA
283	WSC70	Landrace	TTA\|TTA
284	WSC73	Landrace	TTA\|TTA
285	WSC81	Landrace	T\|T
286	WSC85	Improved	T\|T
287	WSC91	Landrace	T\|T
288	WSC93	Landrace	T\|T
289	WSC98	Landrace	TTA\|TTA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825391	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

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