sorgsd

Variation ID : sbi33825393

Variation Detail

Variation ID	sbi33825393
Type	INDEL
Position	Chr01 13964-13968
Ref /Alleles	AAAGG/ A
MAF	A: 0.004
5' Flank	AAAGAATATACATTCAGTCCACTGGTTGAG
3' Flank	AAGGGAGGTACAGTAGCAGTGAAGAGAAAG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	AAAGG\|AAAGG
2	103	Improved	AAAGG\|AAAGG
3	107	Improved	AAAGG\|AAAGG
4	11	Improved	AAAGG\|AAAGG
5	110	Improved	AAAGG\|AAAGG
6	123	Landrace	AAAGG\|AAAGG
7	131	Improved	AAAGG\|AAAGG
8	132	Improved	AAAGG\|AAAGG
9	135	Improved	AAAGG\|AAAGG
10	137	Improved	AAAGG\|AAAGG
11	138	Improved	AAAGG\|AAAGG
12	14	Improved	AAAGG\|AAAGG
13	140	Improved	AAAGG\|AAAGG
14	141	Improved	AAAGG\|AAAGG
15	144	Improved	AAAGG\|AAAGG
16	150	Improved	AAAGG\|AAAGG
17	154	Improved	AAAGG\|AAAGG
18	159	Landrace	AAAGG\|AAAGG
19	16	Improved	AAAGG\|AAAGG
20	161	Landrace	AAAGG\|AAAGG
21	167	Improved	AAAGG\|AAAGG
22	168	Improved	AAAGG\|AAAGG
23	170	Improved	AAAGG\|AAAGG
24	173	Improved	AAAGG\|AAAGG
25	175	Improved	AAAGG\|AAAGG
26	176	Improved	AAAGG\|AAAGG
27	182	Landrace	AAAGG\|AAAGG
28	186	Improved	AAAGG\|AAAGG
29	190	Improved	AAAGG\|AAAGG
30	192	Improved	AAAGG\|AAAGG
31	194	Improved	AAAGG\|AAAGG
32	195	Improved	AAAGG\|AAAGG
33	197	Improved	AAAGG\|AAAGG
34	J22	Landrace	AAAGG\|AAAGG
35	J26	Landrace	AAAGG\|AAAGG
36	J5	Landrace	AAAGG\|AAAGG
37	J50	Landrace	AAAGG\|AAAGG
38	2001	Landrace	AAAGG\|AAAGG
39	2005	Improved	N\|N
40	2008	Improved	AAAGG\|AAAGG
41	2009	Landrace	AAAGG\|AAAGG
42	201	Improved	AAAGG\|AAAGG
43	2010	Landrace	AAAGG\|AAAGG
44	2016	Improved	N\|N
45	2019	Improved	AAAGG\|AAAGG
46	202	Improved	AAAGG\|AAAGG
47	2021	Improved	AAAGG\|AAAGG
48	2023	Improved	AAAGG\|AAAGG
49	2026	Improved	AAAGG\|AAAGG
50	2029	Improved	N\|N
51	2030	Landrace	AAAGG\|AAAGG
52	2031	Landrace	AAAGG\|AAAGG
53	2036	Improved	AAAGG\|AAAGG
54	2037	Improved	AAAGG\|AAAGG
55	2038	Improved	AAAGG\|AAAGG
56	2039	Improved	AAAGG\|AAAGG
57	204	Improved	AAAGG\|AAAGG
58	2042	Improved	AAAGG\|AAAGG
59	2043	Improved	AAAGG\|AAAGG
60	2048	Improved	AAAGG\|AAAGG
61	2049	Improved	AAAGG\|AAAGG
62	205	Improved	AAAGG\|AAAGG
63	2050	Improved	AAAGG\|AAAGG
64	2052	Improved	N\|N
65	2054	Improved	AAAGG\|AAAGG
66	2056	Improved	AAAGG\|AAAGG
67	2059	Improved	AAAGG\|AAAGG
68	206	Improved	AAAGG\|AAAGG
69	2064	Improved	AAAGG\|AAAGG
70	2065	Improved	AAAGG\|AAAGG
71	2067	Improved	AAAGG\|AAAGG
72	2068	Improved	AAAGG\|AAAGG
73	2069	Improved	AAAGG\|AAAGG
74	2071	Improved	AAAGG\|AAAGG
75	2074	Improved	AAAGG\|AAAGG
76	2075	Improved	AAAGG\|AAAGG
77	2076	Improved	AAAGG\|AAAGG
78	2080	Improved	AAAGG\|AAAGG
79	2081	Improved	AAAGG\|AAAGG
80	2082	Improved	AAAGG\|AAAGG
81	2086	Improved	AAAGG\|AAAGG
82	2088	Improved	AAAGG\|AAAGG
83	260	Wild sorghum	AAAGG\|AAAGG
84	261	Improved	AAAGG\|AAAGG
85	262	Improved	AAAGG\|AAAGG
86	263	Improved	AAAGG\|AAAGG
87	286	Improved	AAAGG\|AAAGG
88	29	Improved	AAAGG\|AAAGG
89	3	Improved	AAAGG\|AAAGG
90	302546	S.propinquum	AAAGG\|AAAGG
91	31	Improved	AAAGG\|AAAGG
92	32	Improved	AAAGG\|AAAGG
93	34	Improved	AAAGG\|AAAGG
94	346	Landrace	AAAGG\|AAAGG
95	348	Wild sorghum	AAAGG\|AAAGG
96	353	Wild sorghum	N\|N
97	355	Wild sorghum	A\|A
98	357	Wild sorghum	AAAGG\|AAAGG
99	364	Wild sorghum	AAAGG\|AAAGG
100	367	Landrace	AAAGG\|AAAGG
101	s37	S.propinquum	AAAGG\|AAAGG
102	s38	S.propinquum	AAAGG\|AAAGG
103	370	Landrace	AAAGG\|AAAGG
104	377	Wild sorghum	AAAGG\|AAAGG
105	392	Wild sorghum	AAAGG\|AAAGG
106	394	Wild sorghum	AAAGG\|AAAGG
107	40	Improved	AAAGG\|AAAGG
108	42	Improved	AAAGG\|AAAGG
109	43	Improved	AAAGG\|AAAGG
110	45	Improved	AAAGG\|AAAGG
111	47	Improved	AAAGG\|AAAGG
112	48	Improved	AAAGG\|AAAGG
113	51	Improved	AAAGG\|AAAGG
114	53	Improved	AAAGG\|AAAGG
115	56	Improved	AAAGG\|AAAGG
116	61	Improved	AAAGG\|AAAGG
117	62	Improved	AAAGG\|AAAGG
118	66	Landrace	AAAGG\|AAAGG
119	67	Improved	AAAGG\|AAAGG
120	68	Improved	AAAGG\|AAAGG
121	70	Improved	AAAGG\|AAAGG
122	73	Improved	AAAGG\|AAAGG
123	75	Improved	AAAGG\|AAAGG
124	88	Improved	AAAGG\|AAAGG
125	89	Improved	AAAGG\|AAAGG
126	91	Improved	AAAGG\|AAAGG
127	92	Improved	AAAGG\|AAAGG
128	93	Improved	AAAGG\|AAAGG
129	94	Improved	AAAGG\|AAAGG
130	95	Improved	AAAGG\|AAAGG
131	96	Improved	AAAGG\|AAAGG
132	97	Improved	AAAGG\|AAAGG
133	s1	Improved	AAAGG\|AAAGG
134	s36	Wild sorghum	AAAGG\|AAAGG
135	s2	Landrace	AAAGG\|AAAGG
136	s3	Improved	AAAGG\|AAAGG
137	s32	Improved	AAAGG\|AAAGG
138	s43	Weedy	AAAGG\|AAAGG
139	s40	Landrace	AAAGG\|AAAGG
140	s41	Weedy	AAAGG\|AAAGG
141	s39	Landrace	AAAGG\|AAAGG
142	s42	Landrace	AAAGG\|AAAGG
143	s47	Improved	AAAGG\|AAAGG
144	s5	Landrace	AAAGG\|AAAGG
145	GW102	Landrace	AAAGG\|AAAGG
146	GW103	Landrace	AAAGG\|AAAGG
147	GW104	Landrace	AAAGG\|AAAGG
148	GW105	Landrace	AAAGG\|AAAGG
149	GW16	Landrace	AAAGG\|AAAGG
150	GW2	Landrace	AAAGG\|AAAGG
151	GW34	Landrace	AAAGG\|AAAGG
152	GW37	Landrace	AAAGG\|AAAGG
153	GW58	Landrace	AAAGG\|AAAGG
154	GW59	Landrace	AAAGG\|AAAGG
155	GW9	Landrace	AAAGG\|AAAGG
156	s4	Weedy	AAAGG\|AAAGG
157	s6	Improved	AAAGG\|AAAGG
158	s7	Landrace	AAAGG\|AAAGG
159	s8	Landrace	AAAGG\|AAAGG
160	s9	Landrace	AAAGG\|AAAGG
161	J101	Landrace	AAAGG\|AAAGG
162	J103	Improved	AAAGG\|AAAGG
163	J112	Landrace	AAAGG\|AAAGG
164	J113	Improved	AAAGG\|AAAGG
165	J129	Improved	AAAGG\|AAAGG
166	J130	Improved	AAAGG\|AAAGG
167	J136	Improved	AAAGG\|AAAGG
168	J152	Improved	AAAGG\|AAAGG
169	J2	Landrace	AAAGG\|AAAGG
170	J20	Landrace	AAAGG\|AAAGG
171	J4	Landrace	AAAGG\|AAAGG
172	J42	Landrace	AAAGG\|AAAGG
173	J44	Landrace	AAAGG\|AAAGG
174	J49	Landrace	AAAGG\|AAAGG
175	J52	Landrace	AAAGG\|AAAGG
176	J53	Landrace	N\|N
177	J54	Landrace	AAAGG\|AAAGG
178	J57	Landrace	AAAGG\|AAAGG
179	J59	Landrace	AAAGG\|AAAGG
180	J64	Landrace	N\|N
181	J66	Landrace	AAAGG\|AAAGG
182	J67	Landrace	AAAGG\|AAAGG
183	J69	Landrace	AAAGG\|AAAGG
184	J87	Landrace	AAAGG\|AAAGG
185	J99	Landrace	AAAGG\|AAAGG
186	s45	Landrace	AAAGG\|AAAGG
187	s11	Improved	AAAGG\|AAAGG
188	s10	Improved	AAAGG\|AAAGG
189	s46	Improved	AAAGG\|AAAGG
190	s12	Improved	AAAGG\|AAAGG
191	s13	Landrace	AAAGG\|AAAGG
192	MHMD	Landrace	AAAGG\|AAAGG
193	s14	Improved	AAAGG\|AAAGG
194	s15	Improved	AAAGG\|AAAGG
195	s34	Weedy	AAAGG\|AAAGG
196	s33	Wild sorghum	AAAGG\|AAAGG
197	s21	Wild sorghum	AAAGG\|AAAGG
198	s16	Wild sorghum	AAAGG\|AAAGG
199	s44	Improved	AAAGG\|AAAGG
200	s35	Landrace	AAAGG\|AAAGG
201	s31	Wild sorghum	AAAGG\|AAAGG
202	s17	Improved	AAAGG\|AAAGG
203	s18	Improved	AAAGG\|AAAGG
204	s20	Improved	AAAGG\|AAAGG
205	s19	Improved	AAAGG\|AAAGG
206	s22	Landrace	AAAGG\|AAAGG
207	s23	Landrace	AAAGG\|AAAGG
208	s24	Landrace	AAAGG\|AAAGG
209	s25	Landrace	AAAGG\|AAAGG
210	s26	Landrace	AAAGG\|AAAGG
211	s27	Landrace	AAAGG\|AAAGG
212	s28	Landrace	AAAGG\|AAAGG
213	s29	Landrace	AAAGG\|AAAGG
214	s30	Landrace	AAAGG\|AAAGG
215	SL25	Wild sorghum	AAAGG\|AAAGG
216	SL105	Wild sorghum	AAAGG\|AAAGG
217	SL108	Wild sorghum	AAAGG\|AAAGG
218	SL109	Wild sorghum	AAAGG\|AAAGG
219	SL12	Wild sorghum	AAAGG\|AAAGG
220	SL129	Wild sorghum	AAAGG\|AAAGG
221	SL130	Wild sorghum	AAAGG\|AAAGG
222	SL135	Wild sorghum	AAAGG\|AAAGG
223	SL136	Wild sorghum	AAAGG\|AAAGG
224	SL137	Wild sorghum	AAAGG\|AAAGG
225	SL138	Wild sorghum	AAAGG\|AAAGG
226	SL140	Wild sorghum	AAAGG\|AAAGG
227	SL141	Wild sorghum	AAAGG\|AAAGG
228	SL19	Wild sorghum	AAAGG\|AAAGG
229	SL28	Wild sorghum	AAAGG\|AAAGG
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	AAAGG\|AAAGG
232	SL36	Wild sorghum	AAAGG\|AAAGG
233	SL37	Wild sorghum	AAAGG\|AAAGG
234	SL39	Wild sorghum	AAAGG\|AAAGG
235	SL41	Wild sorghum	AAAGG\|AAAGG
236	SL43	Wild sorghum	AAAGG\|AAAGG
237	SL47	Wild sorghum	AAAGG\|AAAGG
238	SL49	Wild sorghum	AAAGG\|AAAGG
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	AAAGG\|AAAGG
241	SL62	Wild sorghum	N\|N
242	SL83	Wild sorghum	AAAGG\|AAAGG
243	SL97	Landrace	AAAGG\|AAAGG
244	s48	Improved	AAAGG\|AAAGG
245	Tu13	Wild sorghum	AAAGG\|AAAGG
246	Tu14	Wild sorghum	AAAGG\|AAAGG
247	Tu30	Wild sorghum	AAAGG\|AAAGG
248	Tu5	Wild sorghum	AAAGG\|AAAGG
249	WSC5	Landrace	AAAGG\|AAAGG
250	WSC15	Landrace	AAAGG\|AAAGG
251	WSC19	Landrace	AAAGG\|AAAGG
252	WSC30	Landrace	AAAGG\|AAAGG
253	WSC52	Landrace	AAAGG\|AAAGG
254	WSC6	Landrace	AAAGG\|AAAGG
255	WSC61	Landrace	AAAGG\|AAAGG
256	WSC71	Improved	AAAGG\|AAAGG
257	WSC72	Landrace	AAAGG\|AAAGG
258	WSC79	Landrace	AAAGG\|AAAGG
259	WSC94	Landrace	AAAGG\|AAAGG
260	WSC99	Landrace	AAAGG\|AAAGG
261	WSC100	Landrace	AAAGG\|AAAGG
262	WSC104	Landrace	AAAGG\|AAAGG
263	WSC105	Landrace	AAAGG\|AAAGG
264	WSC12	Landrace	AAAGG\|AAAGG
265	WSC13	Landrace	AAAGG\|AAAGG
266	WSC16	Landrace	AAAGG\|AAAGG
267	WSC17	Landrace	AAAGG\|AAAGG
268	WSC18	Landrace	AAAGG\|AAAGG
269	WSC20	Landrace	AAAGG\|AAAGG
270	WSC24	Landrace	AAAGG\|AAAGG
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	N\|N
273	WSC31	Landrace	AAAGG\|AAAGG
274	WSC32	Landrace	AAAGG\|AAAGG
275	WSC34	Landrace	AAAGG\|AAAGG
276	WSC38	Landrace	AAAGG\|AAAGG
277	WSC39	Improved	AAAGG\|AAAGG
278	WSC40	Landrace	AAAGG\|AAAGG
279	WSC54	Landrace	N\|N
280	WSC56	Landrace	AAAGG\|AAAGG
281	WSC59	Landrace	AAAGG\|AAAGG
282	WSC68	Landrace	AAAGG\|AAAGG
283	WSC70	Landrace	AAAGG\|AAAGG
284	WSC73	Landrace	AAAGG\|AAAGG
285	WSC81	Landrace	AAAGG\|AAAGG
286	WSC85	Improved	AAAGG\|AAAGG
287	WSC91	Landrace	AAAGG\|AAAGG
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	AAAGG\|AAAGG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825393	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

Genome Browser