Variation ID : sbi33825418

Variation Detail



Variation ID sbi33825418
Type INDEL
Position Chr01 16210-16215
Ref /Alleles TTCCAA/ T
MAF T: 0.005
5' Flank TCTTAGTTAGCTCACTTTTCCATTGTGTTC
3' Flank TCGTTTTGGATTGTAAGCTTTCTTTAGTTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved TTCCAA|TTCCAA
2 103 Improved TTCCAA|TTCCAA
3 107 Improved TTCCAA|TTCCAA
4 11 Improved TTCCAA|TTCCAA
5 110 Improved TTCCAA|TTCCAA
6 123 Landrace TTCCAA|TTCCAA
7 131 Improved TTCCAA|TTCCAA
8 132 Improved TTCCAA|TTCCAA
9 135 Improved TTCCAA|TTCCAA
10 137 Improved N|N
11 138 Improved TTCCAA|TTCCAA
12 14 Improved TTCCAA|TTCCAA
13 140 Improved N|N
14 141 Improved TTCCAA|TTCCAA
15 144 Improved TTCCAA|TTCCAA
16 150 Improved TTCCAA|TTCCAA
17 154 Improved TTCCAA|TTCCAA
18 159 Landrace TTCCAA|TTCCAA
19 16 Improved TTCCAA|TTCCAA
20 161 Landrace TTCCAA|TTCCAA
21 167 Improved TTCCAA|TTCCAA
22 168 Improved TTCCAA|TTCCAA
23 170 Improved TTCCAA|TTCCAA
24 173 Improved TTCCAA|TTCCAA
25 175 Improved TTCCAA|TTCCAA
26 176 Improved TTCCAA|TTCCAA
27 182 Landrace TTCCAA|TTCCAA
28 186 Improved TTCCAA|TTCCAA
29 190 Improved TTCCAA|TTCCAA
30 192 Improved TTCCAA|TTCCAA
31 194 Improved TTCCAA|TTCCAA
32 195 Improved TTCCAA|TTCCAA
33 197 Improved TTCCAA|TTCCAA
34 J22 Landrace TTCCAA|TTCCAA
35 J26 Landrace TTCCAA|TTCCAA
36 J5 Landrace TTCCAA|TTCCAA
37 J50 Landrace TTCCAA|TTCCAA
38 2001 Landrace TTCCAA|TTCCAA
39 2005 Improved TTCCAA|TTCCAA
40 2008 Improved N|N
41 2009 Landrace TTCCAA|TTCCAA
42 201 Improved TTCCAA|TTCCAA
43 2010 Landrace TTCCAA|TTCCAA
44 2016 Improved N|N
45 2019 Improved TTCCAA|TTCCAA
46 202 Improved TTCCAA|TTCCAA
47 2021 Improved TTCCAA|TTCCAA
48 2023 Improved TTCCAA|TTCCAA
49 2026 Improved TTCCAA|TTCCAA
50 2029 Improved TTCCAA|TTCCAA
51 2030 Landrace TTCCAA|TTCCAA
52 2031 Landrace TTCCAA|TTCCAA
53 2036 Improved TTCCAA|TTCCAA
54 2037 Improved TTCCAA|TTCCAA
55 2038 Improved TTCCAA|TTCCAA
56 2039 Improved TTCCAA|TTCCAA
57 204 Improved TTCCAA|TTCCAA
58 2042 Improved TTCCAA|TTCCAA
59 2043 Improved TTCCAA|TTCCAA
60 2048 Improved TTCCAA|TTCCAA
61 2049 Improved TTCCAA|TTCCAA
62 205 Improved TTCCAA|TTCCAA
63 2050 Improved TTCCAA|TTCCAA
64 2052 Improved TTCCAA|TTCCAA
65 2054 Improved TTCCAA|TTCCAA
66 2056 Improved TTCCAA|TTCCAA
67 2059 Improved TTCCAA|TTCCAA
68 206 Improved TTCCAA|TTCCAA
69 2064 Improved TTCCAA|TTCCAA
70 2065 Improved TTCCAA|TTCCAA
71 2067 Improved TTCCAA|TTCCAA
72 2068 Improved TTCCAA|TTCCAA
73 2069 Improved TTCCAA|TTCCAA
74 2071 Improved TTCCAA|TTCCAA
75 2074 Improved TTCCAA|TTCCAA
76 2075 Improved TTCCAA|TTCCAA
77 2076 Improved TTCCAA|TTCCAA
78 2080 Improved TTCCAA|TTCCAA
79 2081 Improved TTCCAA|TTCCAA
80 2082 Improved TTCCAA|TTCCAA
81 2086 Improved TTCCAA|TTCCAA
82 2088 Improved TTCCAA|TTCCAA
83 260 Wild sorghum TTCCAA|TTCCAA
84 261 Improved TTCCAA|TTCCAA
85 262 Improved TTCCAA|TTCCAA
86 263 Improved N|N
87 286 Improved TTCCAA|TTCCAA
88 29 Improved TTCCAA|TTCCAA
89 3 Improved TTCCAA|TTCCAA
90 302546 S.propinquum TTCCAA|TTCCAA
91 31 Improved TTCCAA|TTCCAA
92 32 Improved TTCCAA|TTCCAA
93 34 Improved TTCCAA|TTCCAA
94 346 Landrace TTCCAA|TTCCAA
95 348 Wild sorghum TTCCAA|TTCCAA
96 353 Wild sorghum TTCCAA|TTCCAA
97 355 Wild sorghum TTCCAA|TTCCAA
98 357 Wild sorghum TTCCAA|TTCCAA
99 364 Wild sorghum TTCCAA|TTCCAA
100 367 Landrace TTCCAA|TTCCAA
101 s37 S.propinquum TTCCAA|TTCCAA
102 s38 S.propinquum TTCCAA|TTCCAA
103 370 Landrace TTCCAA|TTCCAA
104 377 Wild sorghum TTCCAA|TTCCAA
105 392 Wild sorghum TTCCAA|TTCCAA
106 394 Wild sorghum TTCCAA|TTCCAA
107 40 Improved TTCCAA|TTCCAA
108 42 Improved TTCCAA|TTCCAA
109 43 Improved TTCCAA|TTCCAA
110 45 Improved TTCCAA|TTCCAA
111 47 Improved N|N
112 48 Improved TTCCAA|TTCCAA
113 51 Improved TTCCAA|TTCCAA
114 53 Improved TTCCAA|TTCCAA
115 56 Improved TTCCAA|TTCCAA
116 61 Improved TTCCAA|TTCCAA
117 62 Improved TTCCAA|TTCCAA
118 66 Landrace N|N
119 67 Improved TTCCAA|TTCCAA
120 68 Improved TTCCAA|TTCCAA
121 70 Improved TTCCAA|TTCCAA
122 73 Improved TTCCAA|TTCCAA
123 75 Improved TTCCAA|TTCCAA
124 88 Improved TTCCAA|TTCCAA
125 89 Improved TTCCAA|TTCCAA
126 91 Improved TTCCAA|TTCCAA
127 92 Improved TTCCAA|TTCCAA
128 93 Improved TTCCAA|TTCCAA
129 94 Improved TTCCAA|TTCCAA
130 95 Improved TTCCAA|TTCCAA
131 96 Improved TTCCAA|TTCCAA
132 97 Improved TTCCAA|TTCCAA
133 s1 Improved TTCCAA|TTCCAA
134 s36 Wild sorghum TTCCAA|T
135 s2 Landrace TTCCAA|T
136 s3 Improved TTCCAA|TTCCAA
137 s32 Improved TTCCAA|TTCCAA
138 s43 Weedy TTCCAA|TTCCAA
139 s40 Landrace TTCCAA|TTCCAA
140 s41 Weedy TTCCAA|TTCCAA
141 s39 Landrace TTCCAA|TTCCAA
142 s42 Landrace TTCCAA|TTCCAA
143 s47 Improved TTCCAA|TTCCAA
144 s5 Landrace TTCCAA|TTCCAA
145 GW102 Landrace TTCCAA|TTCCAA
146 GW103 Landrace TTCCAA|TTCCAA
147 GW104 Landrace TTCCAA|TTCCAA
148 GW105 Landrace TTCCAA|TTCCAA
149 GW16 Landrace TTCCAA|TTCCAA
150 GW2 Landrace TTCCAA|TTCCAA
151 GW34 Landrace TTCCAA|TTCCAA
152 GW37 Landrace TTCCAA|TTCCAA
153 GW58 Landrace TTCCAA|TTCCAA
154 GW59 Landrace TTCCAA|TTCCAA
155 GW9 Landrace TTCCAA|TTCCAA
156 s4 Weedy TTCCAA|TTCCAA
157 s6 Improved TTCCAA|TTCCAA
158 s7 Landrace TTCCAA|TTCCAA
159 s8 Landrace TTCCAA|TTCCAA
160 s9 Landrace TTCCAA|TTCCAA
161 J101 Landrace TTCCAA|TTCCAA
162 J103 Improved N|N
163 J112 Landrace TTCCAA|TTCCAA
164 J113 Improved TTCCAA|TTCCAA
165 J129 Improved TTCCAA|TTCCAA
166 J130 Improved TTCCAA|TTCCAA
167 J136 Improved TTCCAA|TTCCAA
168 J152 Improved TTCCAA|TTCCAA
169 J2 Landrace TTCCAA|TTCCAA
170 J20 Landrace TTCCAA|TTCCAA
171 J4 Landrace TTCCAA|TTCCAA
172 J42 Landrace TTCCAA|TTCCAA
173 J44 Landrace TTCCAA|TTCCAA
174 J49 Landrace TTCCAA|TTCCAA
175 J52 Landrace TTCCAA|TTCCAA
176 J53 Landrace TTCCAA|TTCCAA
177 J54 Landrace TTCCAA|TTCCAA
178 J57 Landrace TTCCAA|TTCCAA
179 J59 Landrace TTCCAA|TTCCAA
180 J64 Landrace TTCCAA|TTCCAA
181 J66 Landrace TTCCAA|TTCCAA
182 J67 Landrace TTCCAA|TTCCAA
183 J69 Landrace TTCCAA|TTCCAA
184 J87 Landrace TTCCAA|TTCCAA
185 J99 Landrace TTCCAA|TTCCAA
186 s45 Landrace TTCCAA|TTCCAA
187 s11 Improved TTCCAA|TTCCAA
188 s10 Improved TTCCAA|TTCCAA
189 s46 Improved TTCCAA|TTCCAA
190 s12 Improved TTCCAA|TTCCAA
191 s13 Landrace TTCCAA|TTCCAA
192 MHMD Landrace TTCCAA|TTCCAA
193 s14 Improved TTCCAA|TTCCAA
194 s15 Improved TTCCAA|TTCCAA
195 s34 Weedy TTCCAA|T
196 s33 Wild sorghum TTCCAA|TTCCAA
197 s21 Wild sorghum TTCCAA|TTCCAA
198 s16 Wild sorghum TTCCAA|TTCCAA
199 s44 Improved TTCCAA|TTCCAA
200 s35 Landrace TTCCAA|TTCCAA
201 s31 Wild sorghum TTCCAA|TTCCAA
202 s17 Improved TTCCAA|TTCCAA
203 s18 Improved TTCCAA|TTCCAA
204 s20 Improved TTCCAA|TTCCAA
205 s19 Improved TTCCAA|TTCCAA
206 s22 Landrace TTCCAA|TTCCAA
207 s23 Landrace TTCCAA|TTCCAA
208 s24 Landrace TTCCAA|TTCCAA
209 s25 Landrace TTCCAA|TTCCAA
210 s26 Landrace TTCCAA|TTCCAA
211 s27 Landrace TTCCAA|TTCCAA
212 s28 Landrace TTCCAA|TTCCAA
213 s29 Landrace TTCCAA|TTCCAA
214 s30 Landrace TTCCAA|TTCCAA
215 SL25 Wild sorghum TTCCAA|TTCCAA
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum TTCCAA|TTCCAA
218 SL109 Wild sorghum TTCCAA|TTCCAA
219 SL12 Wild sorghum TTCCAA|TTCCAA
220 SL129 Wild sorghum TTCCAA|TTCCAA
221 SL130 Wild sorghum TTCCAA|TTCCAA
222 SL135 Wild sorghum TTCCAA|TTCCAA
223 SL136 Wild sorghum TTCCAA|TTCCAA
224 SL137 Wild sorghum TTCCAA|TTCCAA
225 SL138 Wild sorghum TTCCAA|TTCCAA
226 SL140 Wild sorghum TTCCAA|TTCCAA
227 SL141 Wild sorghum TTCCAA|TTCCAA
228 SL19 Wild sorghum TTCCAA|TTCCAA
229 SL28 Wild sorghum TTCCAA|TTCCAA
230 SL32 Wild sorghum TTCCAA|TTCCAA
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum TTCCAA|TTCCAA
233 SL37 Wild sorghum TTCCAA|TTCCAA
234 SL39 Wild sorghum N|N
235 SL41 Wild sorghum TTCCAA|TTCCAA
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum TTCCAA|TTCCAA
238 SL49 Wild sorghum TTCCAA|TTCCAA
239 SL51 Wild sorghum TTCCAA|TTCCAA
240 SL53 Wild sorghum TTCCAA|TTCCAA
241 SL62 Wild sorghum TTCCAA|TTCCAA
242 SL83 Wild sorghum TTCCAA|TTCCAA
243 SL97 Landrace TTCCAA|TTCCAA
244 s48 Improved TTCCAA|TTCCAA
245 Tu13 Wild sorghum TTCCAA|TTCCAA
246 Tu14 Wild sorghum TTCCAA|TTCCAA
247 Tu30 Wild sorghum TTCCAA|TTCCAA
248 Tu5 Wild sorghum TTCCAA|TTCCAA
249 WSC5 Landrace TTCCAA|TTCCAA
250 WSC15 Landrace TTCCAA|TTCCAA
251 WSC19 Landrace TTCCAA|TTCCAA
252 WSC30 Landrace TTCCAA|TTCCAA
253 WSC52 Landrace TTCCAA|TTCCAA
254 WSC6 Landrace TTCCAA|TTCCAA
255 WSC61 Landrace TTCCAA|TTCCAA
256 WSC71 Improved TTCCAA|TTCCAA
257 WSC72 Landrace TTCCAA|TTCCAA
258 WSC79 Landrace TTCCAA|TTCCAA
259 WSC94 Landrace N|N
260 WSC99 Landrace TTCCAA|TTCCAA
261 WSC100 Landrace TTCCAA|TTCCAA
262 WSC104 Landrace TTCCAA|TTCCAA
263 WSC105 Landrace TTCCAA|TTCCAA
264 WSC12 Landrace TTCCAA|TTCCAA
265 WSC13 Landrace TTCCAA|TTCCAA
266 WSC16 Landrace TTCCAA|TTCCAA
267 WSC17 Landrace TTCCAA|TTCCAA
268 WSC18 Landrace TTCCAA|TTCCAA
269 WSC20 Landrace TTCCAA|TTCCAA
270 WSC24 Landrace TTCCAA|TTCCAA
271 WSC25 Landrace TTCCAA|TTCCAA
272 WSC29 Landrace TTCCAA|TTCCAA
273 WSC31 Landrace TTCCAA|TTCCAA
274 WSC32 Landrace TTCCAA|TTCCAA
275 WSC34 Landrace TTCCAA|TTCCAA
276 WSC38 Landrace TTCCAA|TTCCAA
277 WSC39 Improved TTCCAA|TTCCAA
278 WSC40 Landrace TTCCAA|TTCCAA
279 WSC54 Landrace TTCCAA|TTCCAA
280 WSC56 Landrace TTCCAA|TTCCAA
281 WSC59 Landrace TTCCAA|TTCCAA
282 WSC68 Landrace TTCCAA|TTCCAA
283 WSC70 Landrace TTCCAA|TTCCAA
284 WSC73 Landrace TTCCAA|TTCCAA
285 WSC81 Landrace TTCCAA|TTCCAA
286 WSC85 Improved TTCCAA|TTCCAA
287 WSC91 Landrace TTCCAA|TTCCAA
288 WSC93 Landrace TTCCAA|TTCCAA
289 WSC98 Landrace TTCCAA|TTCCAA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825418 Sobic.001G000200 upstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser