sorgsd

Variation ID : sbi33825431

Variation Detail

Variation ID	sbi33825431
Type	INDEL
Position	Chr01 18416-18418
Ref /Alleles	AGT/ A
MAF	A: 0.250
5' Flank	ATTGTATAGGAAAATAAAAGCCATGATCTG
3' Flank	GTTTCTTATCTTCTTCCATCAACAATCACA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	A\|A
2	103	Improved	A\|A
3	107	Improved	AGT\|AGT
4	11	Improved	A\|A
5	110	Improved	AGT\|AGT
6	123	Landrace	AGT\|AGT
7	131	Improved	N\|N
8	132	Improved	AGT\|AGT
9	135	Improved	A\|A
10	137	Improved	AGT\|AGT
11	138	Improved	AGT\|AGT
12	14	Improved	AGT\|AGT
13	140	Improved	AGT\|AGT
14	141	Improved	N\|N
15	144	Improved	N\|N
16	150	Improved	A\|A
17	154	Improved	AGT\|AGT
18	159	Landrace	AGT\|AGT
19	16	Improved	AGT\|AGT
20	161	Landrace	AGT\|AGT
21	167	Improved	AGT\|AGT
22	168	Improved	AGT\|AGT
23	170	Improved	AGT\|AGT
24	173	Improved	AGT\|AGT
25	175	Improved	A\|A
26	176	Improved	AGT\|AGT
27	182	Landrace	AGT\|AGT
28	186	Improved	N\|N
29	190	Improved	AGT\|AGT
30	192	Improved	AGT\|AGT
31	194	Improved	AGT\|AGT
32	195	Improved	AGT\|AGT
33	197	Improved	AGT\|AGT
34	J22	Landrace	AGT\|AGT
35	J26	Landrace	AGT\|AGT
36	J5	Landrace	AGT\|AGT
37	J50	Landrace	AGT\|AGT
38	2001	Landrace	AGT\|AGT
39	2005	Improved	AGT\|AGT
40	2008	Improved	N\|N
41	2009	Landrace	A\|A
42	201	Improved	N\|N
43	2010	Landrace	A\|A
44	2016	Improved	AGT\|AGT
45	2019	Improved	AGT\|AGT
46	202	Improved	AGT\|AGT
47	2021	Improved	AGT\|AGT
48	2023	Improved	AGT\|AGT
49	2026	Improved	AGT\|AGT
50	2029	Improved	AGT\|AGT
51	2030	Landrace	N\|N
52	2031	Landrace	AGT\|AGT
53	2036	Improved	AGT\|AGT
54	2037	Improved	A\|A
55	2038	Improved	A\|A
56	2039	Improved	N\|N
57	204	Improved	AGT\|A
58	2042	Improved	AGT\|AGT
59	2043	Improved	A\|A
60	2048	Improved	AGT\|AGT
61	2049	Improved	AGT\|AGT
62	205	Improved	N\|N
63	2050	Improved	N\|N
64	2052	Improved	AGT\|AGT
65	2054	Improved	AGT\|AGT
66	2056	Improved	AGT\|AGT
67	2059	Improved	A\|A
68	206	Improved	AGT\|AGT
69	2064	Improved	AGT\|AGT
70	2065	Improved	AGT\|AGT
71	2067	Improved	N\|N
72	2068	Improved	N\|N
73	2069	Improved	N\|N
74	2071	Improved	A\|A
75	2074	Improved	AGT\|AGT
76	2075	Improved	AGT\|AGT
77	2076	Improved	AGT\|AGT
78	2080	Improved	AGT\|AGT
79	2081	Improved	N\|N
80	2082	Improved	AGT\|AGT
81	2086	Improved	AGT\|AGT
82	2088	Improved	AGT\|AGT
83	260	Wild sorghum	N\|N
84	261	Improved	AGT\|AGT
85	262	Improved	N\|N
86	263	Improved	AGT\|AGT
87	286	Improved	AGT\|AGT
88	29	Improved	AGT\|AGT
89	3	Improved	N\|N
90	302546	S.propinquum	AGT\|AGT
91	31	Improved	AGT\|A
92	32	Improved	AGT\|AGT
93	34	Improved	AGT\|AGT
94	346	Landrace	N\|N
95	348	Wild sorghum	A\|A
96	353	Wild sorghum	A\|A
97	355	Wild sorghum	A\|A
98	357	Wild sorghum	A\|A
99	364	Wild sorghum	AGT\|AGT
100	367	Landrace	AGT\|AGT
101	s37	S.propinquum	AGT\|AGT
102	s38	S.propinquum	AGT\|AGT
103	370	Landrace	AGT\|AGT
104	377	Wild sorghum	A\|A
105	392	Wild sorghum	A\|A
106	394	Wild sorghum	N\|N
107	40	Improved	N\|N
108	42	Improved	A\|A
109	43	Improved	AGT\|AGT
110	45	Improved	A\|A
111	47	Improved	AGT\|AGT
112	48	Improved	AGT\|AGT
113	51	Improved	N\|N
114	53	Improved	A\|A
115	56	Improved	AGT\|AGT
116	61	Improved	AGT\|AGT
117	62	Improved	AGT\|AGT
118	66	Landrace	N\|N
119	67	Improved	A\|A
120	68	Improved	AGT\|AGT
121	70	Improved	AGT\|AGT
122	73	Improved	AGT\|AGT
123	75	Improved	AGT\|AGT
124	88	Improved	A\|A
125	89	Improved	N\|N
126	91	Improved	A\|A
127	92	Improved	A\|A
128	93	Improved	N\|N
129	94	Improved	A\|A
130	95	Improved	N\|N
131	96	Improved	A\|A
132	97	Improved	A\|A
133	s1	Improved	AGT\|AGT
134	s36	Wild sorghum	AGT\|AGT
135	s2	Landrace	AGT\|AGT
136	s3	Improved	AGT\|AGT
137	s32	Improved	AGT\|AGT
138	s43	Weedy	AGT\|AGT
139	s40	Landrace	AGT\|AGT
140	s41	Weedy	AGT\|AGT
141	s39	Landrace	AGT\|AGT
142	s42	Landrace	A\|A
143	s47	Improved	AGT\|AGT
144	s5	Landrace	AGT\|A
145	GW102	Landrace	AGT\|AGT
146	GW103	Landrace	A\|A
147	GW104	Landrace	AGT\|AGT
148	GW105	Landrace	A\|A
149	GW16	Landrace	AGT\|AGT
150	GW2	Landrace	N\|N
151	GW34	Landrace	AGT\|AGT
152	GW37	Landrace	AGT\|AGT
153	GW58	Landrace	A\|A
154	GW59	Landrace	AGT\|AGT
155	GW9	Landrace	AGT\|AGT
156	s4	Weedy	AGT\|AGT
157	s6	Improved	AGT\|AGT
158	s7	Landrace	AGT\|AGT
159	s8	Landrace	AGT\|AGT
160	s9	Landrace	AGT\|AGT
161	J101	Landrace	AGT\|AGT
162	J103	Improved	N\|N
163	J112	Landrace	AGT\|AGT
164	J113	Improved	AGT\|AGT
165	J129	Improved	AGT\|AGT
166	J130	Improved	AGT\|AGT
167	J136	Improved	AGT\|AGT
168	J152	Improved	AGT\|AGT
169	J2	Landrace	AGT\|AGT
170	J20	Landrace	AGT\|AGT
171	J4	Landrace	AGT\|AGT
172	J42	Landrace	AGT\|AGT
173	J44	Landrace	AGT\|AGT
174	J49	Landrace	AGT\|AGT
175	J52	Landrace	AGT\|AGT
176	J53	Landrace	AGT\|AGT
177	J54	Landrace	AGT\|AGT
178	J57	Landrace	AGT\|AGT
179	J59	Landrace	AGT\|AGT
180	J64	Landrace	AGT\|AGT
181	J66	Landrace	N\|N
182	J67	Landrace	N\|N
183	J69	Landrace	AGT\|AGT
184	J87	Landrace	AGT\|AGT
185	J99	Landrace	AGT\|AGT
186	s45	Landrace	AGT\|AGT
187	s11	Improved	A\|A
188	s10	Improved	AGT\|AGT
189	s46	Improved	AGT\|AGT
190	s12	Improved	AGT\|AGT
191	s13	Landrace	AGT\|AGT
192	MHMD	Landrace	A\|A
193	s14	Improved	AGT\|AGT
194	s15	Improved	AGT\|AGT
195	s34	Weedy	AGT\|AGT
196	s33	Wild sorghum	AGT\|AGT
197	s21	Wild sorghum	AGT\|AGT
198	s16	Wild sorghum	AGT\|AGT
199	s44	Improved	AGT\|AGT
200	s35	Landrace	A\|A
201	s31	Wild sorghum	AGT\|AGT
202	s17	Improved	AGT\|AGT
203	s18	Improved	AGT\|AGT
204	s20	Improved	AGT\|AGT
205	s19	Improved	AGT\|AGT
206	s22	Landrace	A\|A
207	s23	Landrace	A\|A
208	s24	Landrace	AGT\|AGT
209	s25	Landrace	AGT\|AGT
210	s26	Landrace	A\|A
211	s27	Landrace	A\|A
212	s28	Landrace	AGT\|AGT
213	s29	Landrace	AGT\|AGT
214	s30	Landrace	AGT\|AGT
215	SL25	Wild sorghum	AGT\|AGT
216	SL105	Wild sorghum	A\|A
217	SL108	Wild sorghum	A\|A
218	SL109	Wild sorghum	A\|A
219	SL12	Wild sorghum	A\|A
220	SL129	Wild sorghum	A\|A
221	SL130	Wild sorghum	A\|A
222	SL135	Wild sorghum	AGT\|AGT
223	SL136	Wild sorghum	AGT\|AGT
224	SL137	Wild sorghum	AGT\|AGT
225	SL138	Wild sorghum	N\|N
226	SL140	Wild sorghum	A\|A
227	SL141	Wild sorghum	A\|A
228	SL19	Wild sorghum	A\|A
229	SL28	Wild sorghum	A\|A
230	SL32	Wild sorghum	AGT\|AGT
231	SL35	Wild sorghum	AGT\|AGT
232	SL36	Wild sorghum	AGT\|AGT
233	SL37	Wild sorghum	AGT\|AGT
234	SL39	Wild sorghum	AGT\|AGT
235	SL41	Wild sorghum	A\|A
236	SL43	Wild sorghum	AGT\|AGT
237	SL47	Wild sorghum	AGT\|AGT
238	SL49	Wild sorghum	AGT\|AGT
239	SL51	Wild sorghum	AGT\|AGT
240	SL53	Wild sorghum	A\|A
241	SL62	Wild sorghum	AGT\|AGT
242	SL83	Wild sorghum	AGT\|A
243	SL97	Landrace	AGT\|AGT
244	s48	Improved	AGT\|AGT
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	AGT\|AGT
247	Tu30	Wild sorghum	AGT\|AGT
248	Tu5	Wild sorghum	A\|A
249	WSC5	Landrace	AGT\|AGT
250	WSC15	Landrace	AGT\|AGT
251	WSC19	Landrace	AGT\|AGT
252	WSC30	Landrace	AGT\|AGT
253	WSC52	Landrace	AGT\|AGT
254	WSC6	Landrace	AGT\|AGT
255	WSC61	Landrace	AGT\|AGT
256	WSC71	Improved	AGT\|AGT
257	WSC72	Landrace	AGT\|AGT
258	WSC79	Landrace	A\|A
259	WSC94	Landrace	AGT\|AGT
260	WSC99	Landrace	A\|A
261	WSC100	Landrace	AGT\|AGT
262	WSC104	Landrace	AGT\|AGT
263	WSC105	Landrace	AGT\|AGT
264	WSC12	Landrace	AGT\|AGT
265	WSC13	Landrace	AGT\|AGT
266	WSC16	Landrace	N\|N
267	WSC17	Landrace	AGT\|AGT
268	WSC18	Landrace	AGT\|AGT
269	WSC20	Landrace	AGT\|AGT
270	WSC24	Landrace	AGT\|AGT
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	AGT\|AGT
273	WSC31	Landrace	AGT\|AGT
274	WSC32	Landrace	A\|A
275	WSC34	Landrace	AGT\|AGT
276	WSC38	Landrace	AGT\|AGT
277	WSC39	Improved	AGT\|AGT
278	WSC40	Landrace	AGT\|AGT
279	WSC54	Landrace	AGT\|AGT
280	WSC56	Landrace	A\|A
281	WSC59	Landrace	A\|A
282	WSC68	Landrace	AGT\|AGT
283	WSC70	Landrace	AGT\|AGT
284	WSC73	Landrace	AGT\|AGT
285	WSC81	Landrace	A\|A
286	WSC85	Improved	A\|A
287	WSC91	Landrace	A\|A
288	WSC93	Landrace	A\|A
289	WSC98	Landrace	AGT\|AGT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825431	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825431	Sobic.001G000300	downstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825431	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825431	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825431	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p
sbi33825431	Sobic.001G000200	upstream gene variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

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