sorgsd

Variation ID : sbi33825433

Variation Detail

Variation ID	sbi33825433
Type	INDEL
Position	Chr01 19765-19770
Ref /Alleles	CTAGAT/ C
MAF	C: 0.007
5' Flank	CACTCGTTGATATCTGCAACATAGGGTATA
3' Flank	GTTACAGACCTTAAGTCTTGAGGTTGAAAG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CTAGAT\|CTAGAT
2	103	Improved	CTAGAT\|CTAGAT
3	107	Improved	CTAGAT\|CTAGAT
4	11	Improved	CTAGAT\|CTAGAT
5	110	Improved	CTAGAT\|CTAGAT
6	123	Landrace	C\|C
7	131	Improved	CTAGAT\|CTAGAT
8	132	Improved	CTAGAT\|CTAGAT
9	135	Improved	CTAGAT\|CTAGAT
10	137	Improved	CTAGAT\|CTAGAT
11	138	Improved	CTAGAT\|CTAGAT
12	14	Improved	CTAGAT\|CTAGAT
13	140	Improved	CTAGAT\|CTAGAT
14	141	Improved	CTAGAT\|CTAGAT
15	144	Improved	CTAGAT\|CTAGAT
16	150	Improved	CTAGAT\|CTAGAT
17	154	Improved	CTAGAT\|CTAGAT
18	159	Landrace	CTAGAT\|CTAGAT
19	16	Improved	CTAGAT\|CTAGAT
20	161	Landrace	CTAGAT\|CTAGAT
21	167	Improved	CTAGAT\|CTAGAT
22	168	Improved	CTAGAT\|CTAGAT
23	170	Improved	CTAGAT\|CTAGAT
24	173	Improved	CTAGAT\|CTAGAT
25	175	Improved	CTAGAT\|CTAGAT
26	176	Improved	CTAGAT\|CTAGAT
27	182	Landrace	CTAGAT\|CTAGAT
28	186	Improved	CTAGAT\|CTAGAT
29	190	Improved	CTAGAT\|CTAGAT
30	192	Improved	CTAGAT\|CTAGAT
31	194	Improved	CTAGAT\|CTAGAT
32	195	Improved	CTAGAT\|CTAGAT
33	197	Improved	CTAGAT\|CTAGAT
34	J22	Landrace	CTAGAT\|CTAGAT
35	J26	Landrace	CTAGAT\|CTAGAT
36	J5	Landrace	CTAGAT\|CTAGAT
37	J50	Landrace	CTAGAT\|CTAGAT
38	2001	Landrace	CTAGAT\|CTAGAT
39	2005	Improved	CTAGAT\|CTAGAT
40	2008	Improved	N\|N
41	2009	Landrace	CTAGAT\|CTAGAT
42	201	Improved	CTAGAT\|CTAGAT
43	2010	Landrace	CTAGAT\|CTAGAT
44	2016	Improved	CTAGAT\|CTAGAT
45	2019	Improved	CTAGAT\|CTAGAT
46	202	Improved	CTAGAT\|CTAGAT
47	2021	Improved	CTAGAT\|CTAGAT
48	2023	Improved	CTAGAT\|CTAGAT
49	2026	Improved	CTAGAT\|CTAGAT
50	2029	Improved	CTAGAT\|CTAGAT
51	2030	Landrace	CTAGAT\|CTAGAT
52	2031	Landrace	CTAGAT\|CTAGAT
53	2036	Improved	CTAGAT\|CTAGAT
54	2037	Improved	CTAGAT\|CTAGAT
55	2038	Improved	CTAGAT\|CTAGAT
56	2039	Improved	CTAGAT\|CTAGAT
57	204	Improved	CTAGAT\|CTAGAT
58	2042	Improved	CTAGAT\|CTAGAT
59	2043	Improved	CTAGAT\|CTAGAT
60	2048	Improved	CTAGAT\|CTAGAT
61	2049	Improved	CTAGAT\|CTAGAT
62	205	Improved	CTAGAT\|CTAGAT
63	2050	Improved	CTAGAT\|CTAGAT
64	2052	Improved	CTAGAT\|CTAGAT
65	2054	Improved	CTAGAT\|CTAGAT
66	2056	Improved	N\|N
67	2059	Improved	CTAGAT\|CTAGAT
68	206	Improved	CTAGAT\|CTAGAT
69	2064	Improved	CTAGAT\|CTAGAT
70	2065	Improved	CTAGAT\|CTAGAT
71	2067	Improved	CTAGAT\|CTAGAT
72	2068	Improved	CTAGAT\|CTAGAT
73	2069	Improved	CTAGAT\|CTAGAT
74	2071	Improved	CTAGAT\|CTAGAT
75	2074	Improved	CTAGAT\|CTAGAT
76	2075	Improved	CTAGAT\|CTAGAT
77	2076	Improved	CTAGAT\|CTAGAT
78	2080	Improved	CTAGAT\|CTAGAT
79	2081	Improved	CTAGAT\|CTAGAT
80	2082	Improved	CTAGAT\|CTAGAT
81	2086	Improved	CTAGAT\|CTAGAT
82	2088	Improved	CTAGAT\|CTAGAT
83	260	Wild sorghum	CTAGAT\|CTAGAT
84	261	Improved	CTAGAT\|CTAGAT
85	262	Improved	CTAGAT\|CTAGAT
86	263	Improved	N\|N
87	286	Improved	CTAGAT\|CTAGAT
88	29	Improved	CTAGAT\|CTAGAT
89	3	Improved	CTAGAT\|CTAGAT
90	302546	S.propinquum	CTAGAT\|CTAGAT
91	31	Improved	CTAGAT\|CTAGAT
92	32	Improved	CTAGAT\|CTAGAT
93	34	Improved	CTAGAT\|CTAGAT
94	346	Landrace	CTAGAT\|CTAGAT
95	348	Wild sorghum	CTAGAT\|CTAGAT
96	353	Wild sorghum	CTAGAT\|CTAGAT
97	355	Wild sorghum	CTAGAT\|CTAGAT
98	357	Wild sorghum	CTAGAT\|CTAGAT
99	364	Wild sorghum	CTAGAT\|CTAGAT
100	367	Landrace	CTAGAT\|CTAGAT
101	s37	S.propinquum	CTAGAT\|CTAGAT
102	s38	S.propinquum	CTAGAT\|CTAGAT
103	370	Landrace	CTAGAT\|CTAGAT
104	377	Wild sorghum	CTAGAT\|CTAGAT
105	392	Wild sorghum	CTAGAT\|CTAGAT
106	394	Wild sorghum	CTAGAT\|CTAGAT
107	40	Improved	CTAGAT\|CTAGAT
108	42	Improved	CTAGAT\|CTAGAT
109	43	Improved	CTAGAT\|CTAGAT
110	45	Improved	CTAGAT\|CTAGAT
111	47	Improved	CTAGAT\|CTAGAT
112	48	Improved	CTAGAT\|CTAGAT
113	51	Improved	CTAGAT\|CTAGAT
114	53	Improved	CTAGAT\|CTAGAT
115	56	Improved	CTAGAT\|CTAGAT
116	61	Improved	CTAGAT\|CTAGAT
117	62	Improved	CTAGAT\|CTAGAT
118	66	Landrace	CTAGAT\|CTAGAT
119	67	Improved	CTAGAT\|CTAGAT
120	68	Improved	CTAGAT\|CTAGAT
121	70	Improved	CTAGAT\|CTAGAT
122	73	Improved	CTAGAT\|CTAGAT
123	75	Improved	CTAGAT\|CTAGAT
124	88	Improved	CTAGAT\|CTAGAT
125	89	Improved	CTAGAT\|CTAGAT
126	91	Improved	CTAGAT\|CTAGAT
127	92	Improved	CTAGAT\|CTAGAT
128	93	Improved	CTAGAT\|CTAGAT
129	94	Improved	CTAGAT\|CTAGAT
130	95	Improved	CTAGAT\|CTAGAT
131	96	Improved	CTAGAT\|CTAGAT
132	97	Improved	CTAGAT\|CTAGAT
133	s1	Improved	CTAGAT\|CTAGAT
134	s36	Wild sorghum	CTAGAT\|CTAGAT
135	s2	Landrace	CTAGAT\|CTAGAT
136	s3	Improved	CTAGAT\|CTAGAT
137	s32	Improved	CTAGAT\|CTAGAT
138	s43	Weedy	CTAGAT\|CTAGAT
139	s40	Landrace	CTAGAT\|CTAGAT
140	s41	Weedy	CTAGAT\|CTAGAT
141	s39	Landrace	CTAGAT\|CTAGAT
142	s42	Landrace	CTAGAT\|CTAGAT
143	s47	Improved	CTAGAT\|CTAGAT
144	s5	Landrace	CTAGAT\|CTAGAT
145	GW102	Landrace	CTAGAT\|CTAGAT
146	GW103	Landrace	CTAGAT\|CTAGAT
147	GW104	Landrace	CTAGAT\|CTAGAT
148	GW105	Landrace	CTAGAT\|CTAGAT
149	GW16	Landrace	CTAGAT\|CTAGAT
150	GW2	Landrace	CTAGAT\|CTAGAT
151	GW34	Landrace	CTAGAT\|CTAGAT
152	GW37	Landrace	CTAGAT\|CTAGAT
153	GW58	Landrace	CTAGAT\|CTAGAT
154	GW59	Landrace	CTAGAT\|CTAGAT
155	GW9	Landrace	CTAGAT\|CTAGAT
156	s4	Weedy	CTAGAT\|CTAGAT
157	s6	Improved	CTAGAT\|CTAGAT
158	s7	Landrace	CTAGAT\|CTAGAT
159	s8	Landrace	CTAGAT\|CTAGAT
160	s9	Landrace	CTAGAT\|CTAGAT
161	J101	Landrace	CTAGAT\|CTAGAT
162	J103	Improved	CTAGAT\|CTAGAT
163	J112	Landrace	CTAGAT\|CTAGAT
164	J113	Improved	CTAGAT\|CTAGAT
165	J129	Improved	CTAGAT\|CTAGAT
166	J130	Improved	CTAGAT\|CTAGAT
167	J136	Improved	CTAGAT\|CTAGAT
168	J152	Improved	CTAGAT\|CTAGAT
169	J2	Landrace	CTAGAT\|CTAGAT
170	J20	Landrace	CTAGAT\|CTAGAT
171	J4	Landrace	CTAGAT\|CTAGAT
172	J42	Landrace	CTAGAT\|CTAGAT
173	J44	Landrace	CTAGAT\|CTAGAT
174	J49	Landrace	CTAGAT\|CTAGAT
175	J52	Landrace	N\|N
176	J53	Landrace	CTAGAT\|CTAGAT
177	J54	Landrace	CTAGAT\|CTAGAT
178	J57	Landrace	CTAGAT\|CTAGAT
179	J59	Landrace	CTAGAT\|CTAGAT
180	J64	Landrace	CTAGAT\|CTAGAT
181	J66	Landrace	CTAGAT\|CTAGAT
182	J67	Landrace	N\|N
183	J69	Landrace	CTAGAT\|CTAGAT
184	J87	Landrace	CTAGAT\|CTAGAT
185	J99	Landrace	CTAGAT\|CTAGAT
186	s45	Landrace	CTAGAT\|CTAGAT
187	s11	Improved	CTAGAT\|CTAGAT
188	s10	Improved	CTAGAT\|CTAGAT
189	s46	Improved	CTAGAT\|CTAGAT
190	s12	Improved	CTAGAT\|CTAGAT
191	s13	Landrace	CTAGAT\|CTAGAT
192	MHMD	Landrace	CTAGAT\|CTAGAT
193	s14	Improved	CTAGAT\|CTAGAT
194	s15	Improved	CTAGAT\|CTAGAT
195	s34	Weedy	C\|C
196	s33	Wild sorghum	CTAGAT\|CTAGAT
197	s21	Wild sorghum	CTAGAT\|CTAGAT
198	s16	Wild sorghum	CTAGAT\|CTAGAT
199	s44	Improved	CTAGAT\|CTAGAT
200	s35	Landrace	CTAGAT\|CTAGAT
201	s31	Wild sorghum	CTAGAT\|CTAGAT
202	s17	Improved	CTAGAT\|CTAGAT
203	s18	Improved	CTAGAT\|CTAGAT
204	s20	Improved	CTAGAT\|CTAGAT
205	s19	Improved	CTAGAT\|CTAGAT
206	s22	Landrace	CTAGAT\|CTAGAT
207	s23	Landrace	CTAGAT\|CTAGAT
208	s24	Landrace	CTAGAT\|CTAGAT
209	s25	Landrace	CTAGAT\|CTAGAT
210	s26	Landrace	CTAGAT\|CTAGAT
211	s27	Landrace	CTAGAT\|CTAGAT
212	s28	Landrace	CTAGAT\|CTAGAT
213	s29	Landrace	CTAGAT\|CTAGAT
214	s30	Landrace	CTAGAT\|CTAGAT
215	SL25	Wild sorghum	CTAGAT\|CTAGAT
216	SL105	Wild sorghum	CTAGAT\|CTAGAT
217	SL108	Wild sorghum	CTAGAT\|CTAGAT
218	SL109	Wild sorghum	CTAGAT\|CTAGAT
219	SL12	Wild sorghum	CTAGAT\|CTAGAT
220	SL129	Wild sorghum	CTAGAT\|CTAGAT
221	SL130	Wild sorghum	CTAGAT\|CTAGAT
222	SL135	Wild sorghum	CTAGAT\|CTAGAT
223	SL136	Wild sorghum	N\|N
224	SL137	Wild sorghum	CTAGAT\|CTAGAT
225	SL138	Wild sorghum	CTAGAT\|CTAGAT
226	SL140	Wild sorghum	CTAGAT\|CTAGAT
227	SL141	Wild sorghum	CTAGAT\|CTAGAT
228	SL19	Wild sorghum	CTAGAT\|CTAGAT
229	SL28	Wild sorghum	CTAGAT\|CTAGAT
230	SL32	Wild sorghum	CTAGAT\|CTAGAT
231	SL35	Wild sorghum	CTAGAT\|CTAGAT
232	SL36	Wild sorghum	CTAGAT\|CTAGAT
233	SL37	Wild sorghum	CTAGAT\|CTAGAT
234	SL39	Wild sorghum	CTAGAT\|CTAGAT
235	SL41	Wild sorghum	CTAGAT\|CTAGAT
236	SL43	Wild sorghum	CTAGAT\|CTAGAT
237	SL47	Wild sorghum	CTAGAT\|CTAGAT
238	SL49	Wild sorghum	CTAGAT\|CTAGAT
239	SL51	Wild sorghum	CTAGAT\|CTAGAT
240	SL53	Wild sorghum	CTAGAT\|CTAGAT
241	SL62	Wild sorghum	CTAGAT\|CTAGAT
242	SL83	Wild sorghum	CTAGAT\|CTAGAT
243	SL97	Landrace	CTAGAT\|CTAGAT
244	s48	Improved	CTAGAT\|CTAGAT
245	Tu13	Wild sorghum	CTAGAT\|CTAGAT
246	Tu14	Wild sorghum	CTAGAT\|CTAGAT
247	Tu30	Wild sorghum	CTAGAT\|CTAGAT
248	Tu5	Wild sorghum	CTAGAT\|CTAGAT
249	WSC5	Landrace	CTAGAT\|CTAGAT
250	WSC15	Landrace	CTAGAT\|CTAGAT
251	WSC19	Landrace	CTAGAT\|CTAGAT
252	WSC30	Landrace	CTAGAT\|CTAGAT
253	WSC52	Landrace	CTAGAT\|CTAGAT
254	WSC6	Landrace	CTAGAT\|CTAGAT
255	WSC61	Landrace	CTAGAT\|CTAGAT
256	WSC71	Improved	CTAGAT\|CTAGAT
257	WSC72	Landrace	CTAGAT\|CTAGAT
258	WSC79	Landrace	CTAGAT\|CTAGAT
259	WSC94	Landrace	CTAGAT\|CTAGAT
260	WSC99	Landrace	CTAGAT\|CTAGAT
261	WSC100	Landrace	CTAGAT\|CTAGAT
262	WSC104	Landrace	CTAGAT\|CTAGAT
263	WSC105	Landrace	CTAGAT\|CTAGAT
264	WSC12	Landrace	CTAGAT\|CTAGAT
265	WSC13	Landrace	CTAGAT\|CTAGAT
266	WSC16	Landrace	CTAGAT\|CTAGAT
267	WSC17	Landrace	CTAGAT\|CTAGAT
268	WSC18	Landrace	CTAGAT\|CTAGAT
269	WSC20	Landrace	CTAGAT\|CTAGAT
270	WSC24	Landrace	CTAGAT\|CTAGAT
271	WSC25	Landrace	CTAGAT\|CTAGAT
272	WSC29	Landrace	CTAGAT\|CTAGAT
273	WSC31	Landrace	CTAGAT\|CTAGAT
274	WSC32	Landrace	CTAGAT\|CTAGAT
275	WSC34	Landrace	CTAGAT\|CTAGAT
276	WSC38	Landrace	CTAGAT\|CTAGAT
277	WSC39	Improved	CTAGAT\|CTAGAT
278	WSC40	Landrace	CTAGAT\|CTAGAT
279	WSC54	Landrace	CTAGAT\|CTAGAT
280	WSC56	Landrace	CTAGAT\|CTAGAT
281	WSC59	Landrace	CTAGAT\|CTAGAT
282	WSC68	Landrace	CTAGAT\|CTAGAT
283	WSC70	Landrace	CTAGAT\|CTAGAT
284	WSC73	Landrace	CTAGAT\|CTAGAT
285	WSC81	Landrace	CTAGAT\|CTAGAT
286	WSC85	Improved	CTAGAT\|CTAGAT
287	WSC91	Landrace	CTAGAT\|CTAGAT
288	WSC93	Landrace	CTAGAT\|CTAGAT
289	WSC98	Landrace	CTAGAT\|CTAGAT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825433	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825433	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825433	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p
sbi33825433	Sobic.001G000300	downstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825433	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825433	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825433	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825433	Sobic.001G000200	upstream gene variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

Genome Browser