sorgsd

Variation ID : sbi33825435

Variation Detail

Variation ID	sbi33825435
Type	INDEL
Position	Chr01 20048-20050
Ref /Alleles	TTG/ T
MAF	T: 0.011
5' Flank	CTTCCTGCCTTTTAAGTATACTGCTATATC
3' Flank	AGCAATTAAGTAGCCATTAGTCAATGTTTC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TTG\|TTG
2	103	Improved	TTG\|TTG
3	107	Improved	TTG\|TTG
4	11	Improved	TTG\|TTG
5	110	Improved	TTG\|TTG
6	123	Landrace	TTG\|TTG
7	131	Improved	TTG\|TTG
8	132	Improved	TTG\|TTG
9	135	Improved	TTG\|TTG
10	137	Improved	TTG\|TTG
11	138	Improved	TTG\|TTG
12	14	Improved	TTG\|TTG
13	140	Improved	TTG\|TTG
14	141	Improved	TTG\|TTG
15	144	Improved	TTG\|TTG
16	150	Improved	TTG\|TTG
17	154	Improved	TTG\|TTG
18	159	Landrace	TTG\|TTG
19	16	Improved	TTG\|TTG
20	161	Landrace	TTG\|TTG
21	167	Improved	TTG\|TTG
22	168	Improved	TTG\|TTG
23	170	Improved	TTG\|TTG
24	173	Improved	TTG\|TTG
25	175	Improved	TTG\|TTG
26	176	Improved	TTG\|TTG
27	182	Landrace	T\|T
28	186	Improved	TTG\|TTG
29	190	Improved	TTG\|TTG
30	192	Improved	TTG\|TTG
31	194	Improved	TTG\|TTG
32	195	Improved	TTG\|TTG
33	197	Improved	T\|T
34	J22	Landrace	TTG\|TTG
35	J26	Landrace	TTG\|TTG
36	J5	Landrace	TTG\|TTG
37	J50	Landrace	TTG\|TTG
38	2001	Landrace	TTG\|TTG
39	2005	Improved	TTG\|TTG
40	2008	Improved	N\|N
41	2009	Landrace	TTG\|TTG
42	201	Improved	TTG\|TTG
43	2010	Landrace	TTG\|TTG
44	2016	Improved	TTG\|TTG
45	2019	Improved	TTG\|TTG
46	202	Improved	TTG\|TTG
47	2021	Improved	TTG\|TTG
48	2023	Improved	TTG\|TTG
49	2026	Improved	TTG\|TTG
50	2029	Improved	TTG\|TTG
51	2030	Landrace	TTG\|TTG
52	2031	Landrace	TTG\|TTG
53	2036	Improved	TTG\|TTG
54	2037	Improved	TTG\|TTG
55	2038	Improved	TTG\|TTG
56	2039	Improved	TTG\|TTG
57	204	Improved	TTG\|TTG
58	2042	Improved	TTG\|TTG
59	2043	Improved	TTG\|TTG
60	2048	Improved	TTG\|TTG
61	2049	Improved	TTG\|TTG
62	205	Improved	TTG\|TTG
63	2050	Improved	TTG\|TTG
64	2052	Improved	TTG\|TTG
65	2054	Improved	TTG\|TTG
66	2056	Improved	TTG\|TTG
67	2059	Improved	TTG\|TTG
68	206	Improved	TTG\|TTG
69	2064	Improved	TTG\|TTG
70	2065	Improved	TTG\|TTG
71	2067	Improved	TTG\|TTG
72	2068	Improved	TTG\|TTG
73	2069	Improved	TTG\|TTG
74	2071	Improved	TTG\|TTG
75	2074	Improved	TTG\|TTG
76	2075	Improved	TTG\|TTG
77	2076	Improved	TTG\|TTG
78	2080	Improved	TTG\|TTG
79	2081	Improved	TTG\|TTG
80	2082	Improved	TTG\|TTG
81	2086	Improved	TTG\|TTG
82	2088	Improved	TTG\|TTG
83	260	Wild sorghum	TTG\|TTG
84	261	Improved	TTG\|TTG
85	262	Improved	TTG\|TTG
86	263	Improved	TTG\|TTG
87	286	Improved	TTG\|TTG
88	29	Improved	TTG\|TTG
89	3	Improved	TTG\|TTG
90	302546	S.propinquum	TTG\|TTG
91	31	Improved	TTG\|TTG
92	32	Improved	TTG\|TTG
93	34	Improved	TTG\|TTG
94	346	Landrace	TTG\|TTG
95	348	Wild sorghum	TTG\|TTG
96	353	Wild sorghum	TTG\|TTG
97	355	Wild sorghum	TTG\|TTG
98	357	Wild sorghum	TTG\|TTG
99	364	Wild sorghum	TTG\|TTG
100	367	Landrace	TTG\|TTG
101	s37	S.propinquum	TTG\|TTG
102	s38	S.propinquum	TTG\|TTG
103	370	Landrace	TTG\|TTG
104	377	Wild sorghum	TTG\|TTG
105	392	Wild sorghum	TTG\|TTG
106	394	Wild sorghum	TTG\|TTG
107	40	Improved	TTG\|TTG
108	42	Improved	TTG\|TTG
109	43	Improved	TTG\|TTG
110	45	Improved	TTG\|TTG
111	47	Improved	TTG\|TTG
112	48	Improved	N\|N
113	51	Improved	N\|N
114	53	Improved	TTG\|TTG
115	56	Improved	TTG\|TTG
116	61	Improved	TTG\|TTG
117	62	Improved	TTG\|TTG
118	66	Landrace	TTG\|TTG
119	67	Improved	TTG\|TTG
120	68	Improved	TTG\|TTG
121	70	Improved	TTG\|TTG
122	73	Improved	TTG\|TTG
123	75	Improved	TTG\|TTG
124	88	Improved	TTG\|TTG
125	89	Improved	TTG\|TTG
126	91	Improved	TTG\|TTG
127	92	Improved	TTG\|TTG
128	93	Improved	TTG\|TTG
129	94	Improved	TTG\|TTG
130	95	Improved	TTG\|TTG
131	96	Improved	TTG\|TTG
132	97	Improved	TTG\|TTG
133	s1	Improved	TTG\|TTG
134	s36	Wild sorghum	TTG\|TTG
135	s2	Landrace	TTG\|TTG
136	s3	Improved	TTG\|TTG
137	s32	Improved	TTG\|TTG
138	s43	Weedy	TTG\|TTG
139	s40	Landrace	TTG\|TTG
140	s41	Weedy	TTG\|TTG
141	s39	Landrace	TTG\|TTG
142	s42	Landrace	TTG\|TTG
143	s47	Improved	TTG\|TTG
144	s5	Landrace	TTG\|TTG
145	GW102	Landrace	TTG\|TTG
146	GW103	Landrace	TTG\|TTG
147	GW104	Landrace	TTG\|TTG
148	GW105	Landrace	TTG\|TTG
149	GW16	Landrace	TTG\|TTG
150	GW2	Landrace	TTG\|TTG
151	GW34	Landrace	TTG\|TTG
152	GW37	Landrace	TTG\|TTG
153	GW58	Landrace	TTG\|TTG
154	GW59	Landrace	TTG\|TTG
155	GW9	Landrace	TTG\|TTG
156	s4	Weedy	TTG\|TTG
157	s6	Improved	TTG\|TTG
158	s7	Landrace	TTG\|TTG
159	s8	Landrace	TTG\|TTG
160	s9	Landrace	TTG\|TTG
161	J101	Landrace	TTG\|TTG
162	J103	Improved	TTG\|TTG
163	J112	Landrace	TTG\|TTG
164	J113	Improved	TTG\|TTG
165	J129	Improved	TTG\|TTG
166	J130	Improved	TTG\|TTG
167	J136	Improved	TTG\|TTG
168	J152	Improved	TTG\|TTG
169	J2	Landrace	TTG\|TTG
170	J20	Landrace	TTG\|TTG
171	J4	Landrace	TTG\|TTG
172	J42	Landrace	TTG\|TTG
173	J44	Landrace	TTG\|TTG
174	J49	Landrace	TTG\|TTG
175	J52	Landrace	TTG\|TTG
176	J53	Landrace	TTG\|TTG
177	J54	Landrace	TTG\|TTG
178	J57	Landrace	TTG\|TTG
179	J59	Landrace	TTG\|TTG
180	J64	Landrace	TTG\|TTG
181	J66	Landrace	TTG\|TTG
182	J67	Landrace	TTG\|TTG
183	J69	Landrace	TTG\|TTG
184	J87	Landrace	TTG\|TTG
185	J99	Landrace	TTG\|TTG
186	s45	Landrace	TTG\|TTG
187	s11	Improved	TTG\|TTG
188	s10	Improved	TTG\|TTG
189	s46	Improved	TTG\|TTG
190	s12	Improved	TTG\|TTG
191	s13	Landrace	TTG\|TTG
192	MHMD	Landrace	TTG\|TTG
193	s14	Improved	TTG\|TTG
194	s15	Improved	TTG\|TTG
195	s34	Weedy	TTG\|TTG
196	s33	Wild sorghum	TTG\|TTG
197	s21	Wild sorghum	TTG\|TTG
198	s16	Wild sorghum	TTG\|TTG
199	s44	Improved	TTG\|TTG
200	s35	Landrace	TTG\|TTG
201	s31	Wild sorghum	TTG\|TTG
202	s17	Improved	TTG\|TTG
203	s18	Improved	TTG\|TTG
204	s20	Improved	TTG\|TTG
205	s19	Improved	TTG\|TTG
206	s22	Landrace	TTG\|TTG
207	s23	Landrace	TTG\|TTG
208	s24	Landrace	TTG\|TTG
209	s25	Landrace	TTG\|TTG
210	s26	Landrace	TTG\|TTG
211	s27	Landrace	TTG\|TTG
212	s28	Landrace	TTG\|TTG
213	s29	Landrace	TTG\|TTG
214	s30	Landrace	TTG\|TTG
215	SL25	Wild sorghum	TTG\|TTG
216	SL105	Wild sorghum	TTG\|TTG
217	SL108	Wild sorghum	TTG\|TTG
218	SL109	Wild sorghum	TTG\|TTG
219	SL12	Wild sorghum	TTG\|TTG
220	SL129	Wild sorghum	TTG\|TTG
221	SL130	Wild sorghum	TTG\|TTG
222	SL135	Wild sorghum	TTG\|TTG
223	SL136	Wild sorghum	TTG\|TTG
224	SL137	Wild sorghum	TTG\|TTG
225	SL138	Wild sorghum	N\|N
226	SL140	Wild sorghum	TTG\|TTG
227	SL141	Wild sorghum	TTG\|TTG
228	SL19	Wild sorghum	TTG\|TTG
229	SL28	Wild sorghum	TTG\|TTG
230	SL32	Wild sorghum	TTG\|TTG
231	SL35	Wild sorghum	TTG\|TTG
232	SL36	Wild sorghum	N\|N
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	TTG\|TTG
235	SL41	Wild sorghum	TTG\|TTG
236	SL43	Wild sorghum	TTG\|TTG
237	SL47	Wild sorghum	TTG\|TTG
238	SL49	Wild sorghum	TTG\|TTG
239	SL51	Wild sorghum	TTG\|TTG
240	SL53	Wild sorghum	TTG\|TTG
241	SL62	Wild sorghum	TTG\|TTG
242	SL83	Wild sorghum	TTG\|TTG
243	SL97	Landrace	TTG\|TTG
244	s48	Improved	TTG\|TTG
245	Tu13	Wild sorghum	TTG\|TTG
246	Tu14	Wild sorghum	TTG\|TTG
247	Tu30	Wild sorghum	TTG\|TTG
248	Tu5	Wild sorghum	TTG\|TTG
249	WSC5	Landrace	TTG\|TTG
250	WSC15	Landrace	TTG\|TTG
251	WSC19	Landrace	TTG\|TTG
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	TTG\|TTG
254	WSC6	Landrace	TTG\|TTG
255	WSC61	Landrace	TTG\|TTG
256	WSC71	Improved	TTG\|TTG
257	WSC72	Landrace	TTG\|TTG
258	WSC79	Landrace	TTG\|TTG
259	WSC94	Landrace	TTG\|TTG
260	WSC99	Landrace	TTG\|TTG
261	WSC100	Landrace	TTG\|TTG
262	WSC104	Landrace	TTG\|TTG
263	WSC105	Landrace	TTG\|TTG
264	WSC12	Landrace	TTG\|TTG
265	WSC13	Landrace	TTG\|TTG
266	WSC16	Landrace	TTG\|TTG
267	WSC17	Landrace	TTG\|TTG
268	WSC18	Landrace	TTG\|TTG
269	WSC20	Landrace	TTG\|TTG
270	WSC24	Landrace	TTG\|TTG
271	WSC25	Landrace	TTG\|TTG
272	WSC29	Landrace	TTG\|TTG
273	WSC31	Landrace	TTG\|TTG
274	WSC32	Landrace	TTG\|TTG
275	WSC34	Landrace	TTG\|TTG
276	WSC38	Landrace	TTG\|TTG
277	WSC39	Improved	TTG\|TTG
278	WSC40	Landrace	TTG\|TTG
279	WSC54	Landrace	TTG\|TTG
280	WSC56	Landrace	TTG\|TTG
281	WSC59	Landrace	TTG\|TTG
282	WSC68	Landrace	TTG\|TTG
283	WSC70	Landrace	TTG\|TTG
284	WSC73	Landrace	TTG\|TTG
285	WSC81	Landrace	TTG\|TTG
286	WSC85	Improved	TTG\|TTG
287	WSC91	Landrace	TTG\|TTG
288	WSC93	Landrace	TTG\|TTG
289	WSC98	Landrace	T\|T

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825435	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825435	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825435	Sobic.001G000300	downstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825435	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825435	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825435	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825435	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser