Variation ID : sbi33825438

Variation Detail



Variation ID sbi33825438
Type INDEL
Position Chr01 20449-20450
Ref /Alleles CT/ C
MAF C: 0.125
5' Flank TTCTGCACCACGAACAGAGGAGCCAGAGCC
3' Flank TTTTTGGTGTACGGAGGTGGAGCCATGATT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved C|C
3 107 Improved CT|CT
4 11 Improved CT|CT
5 110 Improved CT|CT
6 123 Landrace CT|CT
7 131 Improved CT|CT
8 132 Improved CT|CT
9 135 Improved CT|CT
10 137 Improved CT|CT
11 138 Improved CT|CT
12 14 Improved CT|CT
13 140 Improved N|N
14 141 Improved C|C
15 144 Improved C|C
16 150 Improved C|C
17 154 Improved CT|CT
18 159 Landrace CT|CT
19 16 Improved CT|CT
20 161 Landrace CT|CT
21 167 Improved CT|CT
22 168 Improved CT|CT
23 170 Improved CT|CT
24 173 Improved CT|CT
25 175 Improved C|C
26 176 Improved CT|CT
27 182 Landrace CT|CT
28 186 Improved CT|CT
29 190 Improved CT|CT
30 192 Improved CT|CT
31 194 Improved CT|CT
32 195 Improved CT|CT
33 197 Improved CT|CT
34 J22 Landrace CT|CT
35 J26 Landrace CT|CT
36 J5 Landrace CT|CT
37 J50 Landrace CT|CT
38 2001 Landrace CT|CT
39 2005 Improved CT|CT
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved C|C
43 2010 Landrace C|C
44 2016 Improved CT|CT
45 2019 Improved CT|CT
46 202 Improved CT|CT
47 2021 Improved CT|CT
48 2023 Improved CT|CT
49 2026 Improved CT|CT
50 2029 Improved CT|CT
51 2030 Landrace N|N
52 2031 Landrace CT|CT
53 2036 Improved CT|CT
54 2037 Improved C|C
55 2038 Improved C|C
56 2039 Improved CT|CT
57 204 Improved CT|CT
58 2042 Improved CT|CT
59 2043 Improved N|N
60 2048 Improved CT|CT
61 2049 Improved CT|CT
62 205 Improved CT|CT
63 2050 Improved CT|CT
64 2052 Improved CT|CT
65 2054 Improved CT|CT
66 2056 Improved CT|CT
67 2059 Improved CT|CT
68 206 Improved CT|CT
69 2064 Improved CT|CT
70 2065 Improved CT|CT
71 2067 Improved CT|CT
72 2068 Improved CT|CT
73 2069 Improved CT|CT
74 2071 Improved C|C
75 2074 Improved CT|CT
76 2075 Improved CT|CT
77 2076 Improved CT|CT
78 2080 Improved CT|CT
79 2081 Improved N|N
80 2082 Improved CT|CT
81 2086 Improved CT|CT
82 2088 Improved CT|CT
83 260 Wild sorghum CT|CT
84 261 Improved CT|CT
85 262 Improved CT|CT
86 263 Improved CT|CT
87 286 Improved CT|CT
88 29 Improved CT|CT
89 3 Improved CT|CT
90 302546 S.propinquum N|N
91 31 Improved CT|C
92 32 Improved CT|CT
93 34 Improved CT|CT
94 346 Landrace CT|CT
95 348 Wild sorghum CT|CT
96 353 Wild sorghum CT|CT
97 355 Wild sorghum CT|CT
98 357 Wild sorghum CT|CT
99 364 Wild sorghum CT|CT
100 367 Landrace N|N
101 s37 S.propinquum CT|CT
102 s38 S.propinquum CT|CT
103 370 Landrace CT|CT
104 377 Wild sorghum CT|CT
105 392 Wild sorghum CT|CT
106 394 Wild sorghum CT|CT
107 40 Improved CT|CT
108 42 Improved C|C
109 43 Improved CT|CT
110 45 Improved C|C
111 47 Improved CT|CT
112 48 Improved CT|CT
113 51 Improved N|N
114 53 Improved C|C
115 56 Improved CT|CT
116 61 Improved CT|CT
117 62 Improved CT|CT
118 66 Landrace CT|CT
119 67 Improved CT|CT
120 68 Improved CT|CT
121 70 Improved CT|CT
122 73 Improved CT|CT
123 75 Improved CT|CT
124 88 Improved C|C
125 89 Improved C|C
126 91 Improved CT|CT
127 92 Improved C|C
128 93 Improved CT|CT
129 94 Improved C|C
130 95 Improved C|C
131 96 Improved C|C
132 97 Improved C|C
133 s1 Improved CT|CT
134 s36 Wild sorghum CT|CT
135 s2 Landrace CT|CT
136 s3 Improved CT|CT
137 s32 Improved CT|CT
138 s43 Weedy CT|CT
139 s40 Landrace N|N
140 s41 Weedy CT|CT
141 s39 Landrace CT|CT
142 s42 Landrace C|C
143 s47 Improved CT|CT
144 s5 Landrace C|C
145 GW102 Landrace CT|CT
146 GW103 Landrace CT|CT
147 GW104 Landrace CT|CT
148 GW105 Landrace CT|CT
149 GW16 Landrace CT|CT
150 GW2 Landrace CT|CT
151 GW34 Landrace CT|CT
152 GW37 Landrace CT|CT
153 GW58 Landrace CT|CT
154 GW59 Landrace CT|CT
155 GW9 Landrace CT|CT
156 s4 Weedy CT|CT
157 s6 Improved CT|CT
158 s7 Landrace CT|CT
159 s8 Landrace CT|CT
160 s9 Landrace CT|CT
161 J101 Landrace CT|CT
162 J103 Improved CT|CT
163 J112 Landrace CT|CT
164 J113 Improved CT|CT
165 J129 Improved CT|CT
166 J130 Improved CT|CT
167 J136 Improved CT|CT
168 J152 Improved CT|CT
169 J2 Landrace CT|CT
170 J20 Landrace CT|CT
171 J4 Landrace N|N
172 J42 Landrace CT|CT
173 J44 Landrace CT|CT
174 J49 Landrace CT|CT
175 J52 Landrace CT|CT
176 J53 Landrace CT|CT
177 J54 Landrace CT|CT
178 J57 Landrace CT|CT
179 J59 Landrace CT|CT
180 J64 Landrace CT|CT
181 J66 Landrace CT|CT
182 J67 Landrace CT|CT
183 J69 Landrace CT|CT
184 J87 Landrace CT|CT
185 J99 Landrace CT|CT
186 s45 Landrace CT|CT
187 s11 Improved CT|CT
188 s10 Improved CT|CT
189 s46 Improved CT|CT
190 s12 Improved CT|CT
191 s13 Landrace CT|CT
192 MHMD Landrace N|N
193 s14 Improved CT|CT
194 s15 Improved CT|CT
195 s34 Weedy CT|CT
196 s33 Wild sorghum CT|CT
197 s21 Wild sorghum CT|CT
198 s16 Wild sorghum CT|CT
199 s44 Improved CT|CT
200 s35 Landrace C|C
201 s31 Wild sorghum CT|CT
202 s17 Improved CT|CT
203 s18 Improved CT|CT
204 s20 Improved CT|CT
205 s19 Improved CT|CT
206 s22 Landrace C|C
207 s23 Landrace C|C
208 s24 Landrace CT|CT
209 s25 Landrace CT|CT
210 s26 Landrace C|C
211 s27 Landrace C|C
212 s28 Landrace CT|CT
213 s29 Landrace CT|CT
214 s30 Landrace CT|CT
215 SL25 Wild sorghum CT|CT
216 SL105 Wild sorghum CT|CT
217 SL108 Wild sorghum CT|CT
218 SL109 Wild sorghum CT|CT
219 SL12 Wild sorghum CT|CT
220 SL129 Wild sorghum CT|CT
221 SL130 Wild sorghum CT|CT
222 SL135 Wild sorghum CT|CT
223 SL136 Wild sorghum CT|CT
224 SL137 Wild sorghum CT|CT
225 SL138 Wild sorghum CT|CT
226 SL140 Wild sorghum CT|CT
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum CT|CT
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum CT|CT
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum CT|CT
234 SL39 Wild sorghum CT|CT
235 SL41 Wild sorghum CT|CT
236 SL43 Wild sorghum CT|CT
237 SL47 Wild sorghum CT|CT
238 SL49 Wild sorghum CT|CT
239 SL51 Wild sorghum CT|CT
240 SL53 Wild sorghum CT|CT
241 SL62 Wild sorghum CT|CT
242 SL83 Wild sorghum CT|CT
243 SL97 Landrace CT|CT
244 s48 Improved CT|CT
245 Tu13 Wild sorghum CT|CT
246 Tu14 Wild sorghum CT|CT
247 Tu30 Wild sorghum CT|CT
248 Tu5 Wild sorghum CT|CT
249 WSC5 Landrace CT|CT
250 WSC15 Landrace CT|CT
251 WSC19 Landrace CT|CT
252 WSC30 Landrace CT|CT
253 WSC52 Landrace CT|CT
254 WSC6 Landrace CT|CT
255 WSC61 Landrace CT|CT
256 WSC71 Improved CT|CT
257 WSC72 Landrace CT|CT
258 WSC79 Landrace C|C
259 WSC94 Landrace CT|CT
260 WSC99 Landrace C|C
261 WSC100 Landrace CT|CT
262 WSC104 Landrace CT|CT
263 WSC105 Landrace CT|CT
264 WSC12 Landrace CT|CT
265 WSC13 Landrace CT|CT
266 WSC16 Landrace CT|CT
267 WSC17 Landrace CT|CT
268 WSC18 Landrace CT|CT
269 WSC20 Landrace CT|CT
270 WSC24 Landrace CT|CT
271 WSC25 Landrace CT|CT
272 WSC29 Landrace CT|CT
273 WSC31 Landrace CT|CT
274 WSC32 Landrace CT|CT
275 WSC34 Landrace CT|CT
276 WSC38 Landrace CT|CT
277 WSC39 Improved CT|CT
278 WSC40 Landrace CT|CT
279 WSC54 Landrace CT|CT
280 WSC56 Landrace CT|C
281 WSC59 Landrace CT|CT
282 WSC68 Landrace CT|CT
283 WSC70 Landrace CT|CT
284 WSC73 Landrace CT|CT
285 WSC81 Landrace C|C
286 WSC85 Improved C|C
287 WSC91 Landrace C|C
288 WSC93 Landrace N|N
289 WSC98 Landrace CT|CT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825438 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825438 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825438 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825438 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825438 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825438 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825438 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser