Variation ID : sbi33825439

Variation Detail



Variation ID sbi33825439
Type INDEL
Position Chr01 20722-20730
Ref /Alleles GTAGTTGAA/ GGTTGAA or G
MAF GGTTGAA: 0.007
5' Flank AAGCTAAATGTCGATAGGCATAGTAAGGAT
3' Flank TAGTTGAATAATTGGGATCCATGTTTCATT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved GTAGTTGAA|GTAGTTGAA
3 107 Improved GTAGTTGAA|GTAGTTGAA
4 11 Improved GTAGTTGAA|GTAGTTGAA
5 110 Improved GTAGTTGAA|GTAGTTGAA
6 123 Landrace GTAGTTGAA|GTAGTTGAA
7 131 Improved GTAGTTGAA|GTAGTTGAA
8 132 Improved GTAGTTGAA|GTAGTTGAA
9 135 Improved GTAGTTGAA|GTAGTTGAA
10 137 Improved GTAGTTGAA|GTAGTTGAA
11 138 Improved GTAGTTGAA|GTAGTTGAA
12 14 Improved GTAGTTGAA|GTAGTTGAA
13 140 Improved GTAGTTGAA|GTAGTTGAA
14 141 Improved GTAGTTGAA|GTAGTTGAA
15 144 Improved GTAGTTGAA|GTAGTTGAA
16 150 Improved GTAGTTGAA|GTAGTTGAA
17 154 Improved GTAGTTGAA|GTAGTTGAA
18 159 Landrace GTAGTTGAA|GTAGTTGAA
19 16 Improved GTAGTTGAA|GTAGTTGAA
20 161 Landrace GTAGTTGAA|GTAGTTGAA
21 167 Improved GTAGTTGAA|GTAGTTGAA
22 168 Improved GTAGTTGAA|GTAGTTGAA
23 170 Improved GTAGTTGAA|GTAGTTGAA
24 173 Improved GTAGTTGAA|GTAGTTGAA
25 175 Improved GTAGTTGAA|GTAGTTGAA
26 176 Improved GTAGTTGAA|GTAGTTGAA
27 182 Landrace N|N
28 186 Improved GTAGTTGAA|GTAGTTGAA
29 190 Improved GTAGTTGAA|GTAGTTGAA
30 192 Improved GTAGTTGAA|GTAGTTGAA
31 194 Improved GTAGTTGAA|GTAGTTGAA
32 195 Improved GTAGTTGAA|GTAGTTGAA
33 197 Improved GGTTGAA|GGTTGAA
34 J22 Landrace GTAGTTGAA|GTAGTTGAA
35 J26 Landrace GTAGTTGAA|GTAGTTGAA
36 J5 Landrace GTAGTTGAA|GTAGTTGAA
37 J50 Landrace GTAGTTGAA|GTAGTTGAA
38 2001 Landrace GTAGTTGAA|GTAGTTGAA
39 2005 Improved GTAGTTGAA|GTAGTTGAA
40 2008 Improved GTAGTTGAA|GTAGTTGAA
41 2009 Landrace GTAGTTGAA|GTAGTTGAA
42 201 Improved GTAGTTGAA|GTAGTTGAA
43 2010 Landrace GTAGTTGAA|GTAGTTGAA
44 2016 Improved GTAGTTGAA|GTAGTTGAA
45 2019 Improved GTAGTTGAA|GTAGTTGAA
46 202 Improved GTAGTTGAA|GTAGTTGAA
47 2021 Improved GTAGTTGAA|GTAGTTGAA
48 2023 Improved GTAGTTGAA|GTAGTTGAA
49 2026 Improved GTAGTTGAA|GTAGTTGAA
50 2029 Improved GTAGTTGAA|GTAGTTGAA
51 2030 Landrace GTAGTTGAA|GTAGTTGAA
52 2031 Landrace GTAGTTGAA|GTAGTTGAA
53 2036 Improved GTAGTTGAA|GTAGTTGAA
54 2037 Improved GTAGTTGAA|GTAGTTGAA
55 2038 Improved GTAGTTGAA|GTAGTTGAA
56 2039 Improved GTAGTTGAA|GTAGTTGAA
57 204 Improved GTAGTTGAA|GTAGTTGAA
58 2042 Improved GTAGTTGAA|GTAGTTGAA
59 2043 Improved GTAGTTGAA|GTAGTTGAA
60 2048 Improved GTAGTTGAA|GTAGTTGAA
61 2049 Improved GTAGTTGAA|GTAGTTGAA
62 205 Improved GTAGTTGAA|GTAGTTGAA
63 2050 Improved GTAGTTGAA|GTAGTTGAA
64 2052 Improved GTAGTTGAA|GTAGTTGAA
65 2054 Improved GTAGTTGAA|GTAGTTGAA
66 2056 Improved N|N
67 2059 Improved GTAGTTGAA|GTAGTTGAA
68 206 Improved GTAGTTGAA|GTAGTTGAA
69 2064 Improved GTAGTTGAA|GTAGTTGAA
70 2065 Improved GTAGTTGAA|GTAGTTGAA
71 2067 Improved GTAGTTGAA|GTAGTTGAA
72 2068 Improved GTAGTTGAA|GTAGTTGAA
73 2069 Improved GTAGTTGAA|GTAGTTGAA
74 2071 Improved GTAGTTGAA|GTAGTTGAA
75 2074 Improved GTAGTTGAA|GTAGTTGAA
76 2075 Improved GTAGTTGAA|GTAGTTGAA
77 2076 Improved GTAGTTGAA|GTAGTTGAA
78 2080 Improved GTAGTTGAA|GTAGTTGAA
79 2081 Improved GTAGTTGAA|GTAGTTGAA
80 2082 Improved GTAGTTGAA|GTAGTTGAA
81 2086 Improved GTAGTTGAA|GTAGTTGAA
82 2088 Improved GTAGTTGAA|GTAGTTGAA
83 260 Wild sorghum GTAGTTGAA|GTAGTTGAA
84 261 Improved GTAGTTGAA|GTAGTTGAA
85 262 Improved GTAGTTGAA|GTAGTTGAA
86 263 Improved GTAGTTGAA|GTAGTTGAA
87 286 Improved GTAGTTGAA|GTAGTTGAA
88 29 Improved GTAGTTGAA|GTAGTTGAA
89 3 Improved GTAGTTGAA|GTAGTTGAA
90 302546 S.propinquum GTAGTTGAA|GTAGTTGAA
91 31 Improved GTAGTTGAA|GTAGTTGAA
92 32 Improved GTAGTTGAA|GTAGTTGAA
93 34 Improved GTAGTTGAA|GTAGTTGAA
94 346 Landrace GTAGTTGAA|GTAGTTGAA
95 348 Wild sorghum GTAGTTGAA|GTAGTTGAA
96 353 Wild sorghum GTAGTTGAA|GTAGTTGAA
97 355 Wild sorghum GTAGTTGAA|GTAGTTGAA
98 357 Wild sorghum GTAGTTGAA|GTAGTTGAA
99 364 Wild sorghum GTAGTTGAA|GTAGTTGAA
100 367 Landrace GTAGTTGAA|GTAGTTGAA
101 s37 S.propinquum GTAGTTGAA|GTAGTTGAA
102 s38 S.propinquum GTAGTTGAA|GTAGTTGAA
103 370 Landrace GTAGTTGAA|GTAGTTGAA
104 377 Wild sorghum GTAGTTGAA|GTAGTTGAA
105 392 Wild sorghum GTAGTTGAA|GTAGTTGAA
106 394 Wild sorghum GTAGTTGAA|GTAGTTGAA
107 40 Improved GTAGTTGAA|GTAGTTGAA
108 42 Improved GTAGTTGAA|GTAGTTGAA
109 43 Improved GTAGTTGAA|GTAGTTGAA
110 45 Improved GTAGTTGAA|GTAGTTGAA
111 47 Improved GTAGTTGAA|GTAGTTGAA
112 48 Improved GTAGTTGAA|GTAGTTGAA
113 51 Improved GTAGTTGAA|GTAGTTGAA
114 53 Improved N|N
115 56 Improved GTAGTTGAA|GTAGTTGAA
116 61 Improved GTAGTTGAA|GTAGTTGAA
117 62 Improved N|N
118 66 Landrace GTAGTTGAA|GTAGTTGAA
119 67 Improved GTAGTTGAA|GTAGTTGAA
120 68 Improved GTAGTTGAA|GTAGTTGAA
121 70 Improved GTAGTTGAA|GTAGTTGAA
122 73 Improved GTAGTTGAA|GTAGTTGAA
123 75 Improved GTAGTTGAA|GTAGTTGAA
124 88 Improved GTAGTTGAA|GTAGTTGAA
125 89 Improved GTAGTTGAA|GTAGTTGAA
126 91 Improved GTAGTTGAA|GTAGTTGAA
127 92 Improved GTAGTTGAA|GTAGTTGAA
128 93 Improved GTAGTTGAA|GTAGTTGAA
129 94 Improved GTAGTTGAA|GTAGTTGAA
130 95 Improved GTAGTTGAA|GTAGTTGAA
131 96 Improved GTAGTTGAA|GTAGTTGAA
132 97 Improved GTAGTTGAA|GTAGTTGAA
133 s1 Improved GTAGTTGAA|GTAGTTGAA
134 s36 Wild sorghum GTAGTTGAA|GTAGTTGAA
135 s2 Landrace GTAGTTGAA|GTAGTTGAA
136 s3 Improved GTAGTTGAA|GTAGTTGAA
137 s32 Improved GTAGTTGAA|GTAGTTGAA
138 s43 Weedy GTAGTTGAA|GTAGTTGAA
139 s40 Landrace GTAGTTGAA|GTAGTTGAA
140 s41 Weedy GTAGTTGAA|GTAGTTGAA
141 s39 Landrace GTAGTTGAA|GTAGTTGAA
142 s42 Landrace GTAGTTGAA|GTAGTTGAA
143 s47 Improved GTAGTTGAA|GTAGTTGAA
144 s5 Landrace GTAGTTGAA|GTAGTTGAA
145 GW102 Landrace GTAGTTGAA|GTAGTTGAA
146 GW103 Landrace GTAGTTGAA|GTAGTTGAA
147 GW104 Landrace GTAGTTGAA|GTAGTTGAA
148 GW105 Landrace GTAGTTGAA|GTAGTTGAA
149 GW16 Landrace GTAGTTGAA|GTAGTTGAA
150 GW2 Landrace GTAGTTGAA|GTAGTTGAA
151 GW34 Landrace GTAGTTGAA|GTAGTTGAA
152 GW37 Landrace GTAGTTGAA|GTAGTTGAA
153 GW58 Landrace GTAGTTGAA|GTAGTTGAA
154 GW59 Landrace N|N
155 GW9 Landrace GTAGTTGAA|GTAGTTGAA
156 s4 Weedy GTAGTTGAA|GTAGTTGAA
157 s6 Improved GTAGTTGAA|GTAGTTGAA
158 s7 Landrace GTAGTTGAA|GTAGTTGAA
159 s8 Landrace GTAGTTGAA|GTAGTTGAA
160 s9 Landrace GTAGTTGAA|GTAGTTGAA
161 J101 Landrace GTAGTTGAA|GTAGTTGAA
162 J103 Improved GTAGTTGAA|GTAGTTGAA
163 J112 Landrace GTAGTTGAA|GTAGTTGAA
164 J113 Improved GTAGTTGAA|GTAGTTGAA
165 J129 Improved GTAGTTGAA|GTAGTTGAA
166 J130 Improved GTAGTTGAA|GTAGTTGAA
167 J136 Improved GTAGTTGAA|GTAGTTGAA
168 J152 Improved GTAGTTGAA|GTAGTTGAA
169 J2 Landrace GTAGTTGAA|GTAGTTGAA
170 J20 Landrace GTAGTTGAA|GTAGTTGAA
171 J4 Landrace GTAGTTGAA|GTAGTTGAA
172 J42 Landrace GTAGTTGAA|GTAGTTGAA
173 J44 Landrace GTAGTTGAA|GTAGTTGAA
174 J49 Landrace GTAGTTGAA|GTAGTTGAA
175 J52 Landrace GTAGTTGAA|GTAGTTGAA
176 J53 Landrace GTAGTTGAA|GTAGTTGAA
177 J54 Landrace GTAGTTGAA|GTAGTTGAA
178 J57 Landrace GTAGTTGAA|GTAGTTGAA
179 J59 Landrace GTAGTTGAA|GTAGTTGAA
180 J64 Landrace GTAGTTGAA|GTAGTTGAA
181 J66 Landrace GTAGTTGAA|GTAGTTGAA
182 J67 Landrace GTAGTTGAA|GTAGTTGAA
183 J69 Landrace GTAGTTGAA|GTAGTTGAA
184 J87 Landrace GTAGTTGAA|GTAGTTGAA
185 J99 Landrace GTAGTTGAA|GTAGTTGAA
186 s45 Landrace GTAGTTGAA|GTAGTTGAA
187 s11 Improved GTAGTTGAA|GTAGTTGAA
188 s10 Improved GTAGTTGAA|GTAGTTGAA
189 s46 Improved GTAGTTGAA|GTAGTTGAA
190 s12 Improved GTAGTTGAA|GTAGTTGAA
191 s13 Landrace GTAGTTGAA|GTAGTTGAA
192 MHMD Landrace GTAGTTGAA|GTAGTTGAA
193 s14 Improved GTAGTTGAA|GTAGTTGAA
194 s15 Improved GTAGTTGAA|GTAGTTGAA
195 s34 Weedy GTAGTTGAA|GTAGTTGAA
196 s33 Wild sorghum GTAGTTGAA|GTAGTTGAA
197 s21 Wild sorghum GTAGTTGAA|GTAGTTGAA
198 s16 Wild sorghum GTAGTTGAA|GTAGTTGAA
199 s44 Improved GTAGTTGAA|GTAGTTGAA
200 s35 Landrace GTAGTTGAA|GTAGTTGAA
201 s31 Wild sorghum GTAGTTGAA|GTAGTTGAA
202 s17 Improved GTAGTTGAA|GTAGTTGAA
203 s18 Improved GTAGTTGAA|GTAGTTGAA
204 s20 Improved GTAGTTGAA|GTAGTTGAA
205 s19 Improved GTAGTTGAA|GTAGTTGAA
206 s22 Landrace GTAGTTGAA|GTAGTTGAA
207 s23 Landrace GTAGTTGAA|GTAGTTGAA
208 s24 Landrace GTAGTTGAA|GTAGTTGAA
209 s25 Landrace GTAGTTGAA|GTAGTTGAA
210 s26 Landrace GTAGTTGAA|GTAGTTGAA
211 s27 Landrace GTAGTTGAA|GTAGTTGAA
212 s28 Landrace GTAGTTGAA|GTAGTTGAA
213 s29 Landrace GTAGTTGAA|GTAGTTGAA
214 s30 Landrace GTAGTTGAA|GTAGTTGAA
215 SL25 Wild sorghum GTAGTTGAA|GTAGTTGAA
216 SL105 Wild sorghum GTAGTTGAA|GTAGTTGAA
217 SL108 Wild sorghum G|G
218 SL109 Wild sorghum GTAGTTGAA|GTAGTTGAA
219 SL12 Wild sorghum GTAGTTGAA|GTAGTTGAA
220 SL129 Wild sorghum G|G
221 SL130 Wild sorghum GTAGTTGAA|GTAGTTGAA
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum GTAGTTGAA|GTAGTTGAA
225 SL138 Wild sorghum GTAGTTGAA|GTAGTTGAA
226 SL140 Wild sorghum GTAGTTGAA|GTAGTTGAA
227 SL141 Wild sorghum GTAGTTGAA|GTAGTTGAA
228 SL19 Wild sorghum GTAGTTGAA|GTAGTTGAA
229 SL28 Wild sorghum GTAGTTGAA|GTAGTTGAA
230 SL32 Wild sorghum GTAGTTGAA|GTAGTTGAA
231 SL35 Wild sorghum GTAGTTGAA|GTAGTTGAA
232 SL36 Wild sorghum GTAGTTGAA|GTAGTTGAA
233 SL37 Wild sorghum GTAGTTGAA|GTAGTTGAA
234 SL39 Wild sorghum GTAGTTGAA|GTAGTTGAA
235 SL41 Wild sorghum GTAGTTGAA|GTAGTTGAA
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum GTAGTTGAA|GTAGTTGAA
238 SL49 Wild sorghum GTAGTTGAA|GTAGTTGAA
239 SL51 Wild sorghum GTAGTTGAA|GTAGTTGAA
240 SL53 Wild sorghum GTAGTTGAA|GTAGTTGAA
241 SL62 Wild sorghum GTAGTTGAA|GTAGTTGAA
242 SL83 Wild sorghum GTAGTTGAA|GTAGTTGAA
243 SL97 Landrace GTAGTTGAA|GTAGTTGAA
244 s48 Improved GTAGTTGAA|GTAGTTGAA
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum GTAGTTGAA|GTAGTTGAA
247 Tu30 Wild sorghum GTAGTTGAA|GTAGTTGAA
248 Tu5 Wild sorghum GTAGTTGAA|GTAGTTGAA
249 WSC5 Landrace GTAGTTGAA|GTAGTTGAA
250 WSC15 Landrace GTAGTTGAA|GTAGTTGAA
251 WSC19 Landrace GTAGTTGAA|GTAGTTGAA
252 WSC30 Landrace GTAGTTGAA|GTAGTTGAA
253 WSC52 Landrace GTAGTTGAA|GTAGTTGAA
254 WSC6 Landrace GTAGTTGAA|GTAGTTGAA
255 WSC61 Landrace GTAGTTGAA|GTAGTTGAA
256 WSC71 Improved GTAGTTGAA|GTAGTTGAA
257 WSC72 Landrace GTAGTTGAA|GTAGTTGAA
258 WSC79 Landrace N|N
259 WSC94 Landrace GTAGTTGAA|GTAGTTGAA
260 WSC99 Landrace N|N
261 WSC100 Landrace GTAGTTGAA|GTAGTTGAA
262 WSC104 Landrace GTAGTTGAA|GTAGTTGAA
263 WSC105 Landrace GTAGTTGAA|GTAGTTGAA
264 WSC12 Landrace GTAGTTGAA|GTAGTTGAA
265 WSC13 Landrace GTAGTTGAA|GTAGTTGAA
266 WSC16 Landrace GTAGTTGAA|GTAGTTGAA
267 WSC17 Landrace GTAGTTGAA|GTAGTTGAA
268 WSC18 Landrace N|N
269 WSC20 Landrace GTAGTTGAA|GTAGTTGAA
270 WSC24 Landrace GTAGTTGAA|GTAGTTGAA
271 WSC25 Landrace GTAGTTGAA|GTAGTTGAA
272 WSC29 Landrace GTAGTTGAA|GTAGTTGAA
273 WSC31 Landrace GTAGTTGAA|GTAGTTGAA
274 WSC32 Landrace GTAGTTGAA|GTAGTTGAA
275 WSC34 Landrace GTAGTTGAA|GTAGTTGAA
276 WSC38 Landrace GTAGTTGAA|GTAGTTGAA
277 WSC39 Improved GTAGTTGAA|GTAGTTGAA
278 WSC40 Landrace GTAGTTGAA|GTAGTTGAA
279 WSC54 Landrace GTAGTTGAA|GTAGTTGAA
280 WSC56 Landrace GTAGTTGAA|GTAGTTGAA
281 WSC59 Landrace GTAGTTGAA|GTAGTTGAA
282 WSC68 Landrace GTAGTTGAA|GTAGTTGAA
283 WSC70 Landrace GTAGTTGAA|GTAGTTGAA
284 WSC73 Landrace GTAGTTGAA|GTAGTTGAA
285 WSC81 Landrace GTAGTTGAA|GTAGTTGAA
286 WSC85 Improved GTAGTTGAA|GTAGTTGAA
287 WSC91 Landrace GTAGTTGAA|GTAGTTGAA
288 WSC93 Landrace GTAGTTGAA|GTAGTTGAA
289 WSC98 Landrace GGTTGAA|GGTTGAA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825439 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825439 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825439 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser