sorgsd

Variation ID : sbi33825455

Variation Detail

Variation ID	sbi33825455
Type	INDEL
Position	Chr01 21412-21416
Ref /Alleles	CCCCA/ C
MAF	C: 0.004
5' Flank	GCAGAAGCTCACGGTGAAACGAAAACGAAC
3' Flank	CACACTACGGCTGCTCTGAGCCTCACATAT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CCCCA\|CCCCA
2	103	Improved	CCCCA\|CCCCA
3	107	Improved	CCCCA\|CCCCA
4	11	Improved	CCCCA\|CCCCA
5	110	Improved	CCCCA\|CCCCA
6	123	Landrace	CCCCA\|CCCCA
7	131	Improved	CCCCA\|CCCCA
8	132	Improved	CCCCA\|CCCCA
9	135	Improved	CCCCA\|CCCCA
10	137	Improved	CCCCA\|CCCCA
11	138	Improved	CCCCA\|CCCCA
12	14	Improved	CCCCA\|CCCCA
13	140	Improved	CCCCA\|CCCCA
14	141	Improved	CCCCA\|CCCCA
15	144	Improved	CCCCA\|CCCCA
16	150	Improved	CCCCA\|CCCCA
17	154	Improved	CCCCA\|CCCCA
18	159	Landrace	CCCCA\|CCCCA
19	16	Improved	CCCCA\|CCCCA
20	161	Landrace	CCCCA\|CCCCA
21	167	Improved	CCCCA\|CCCCA
22	168	Improved	CCCCA\|CCCCA
23	170	Improved	CCCCA\|CCCCA
24	173	Improved	CCCCA\|CCCCA
25	175	Improved	N\|N
26	176	Improved	N\|N
27	182	Landrace	CCCCA\|CCCCA
28	186	Improved	CCCCA\|CCCCA
29	190	Improved	CCCCA\|CCCCA
30	192	Improved	CCCCA\|CCCCA
31	194	Improved	CCCCA\|CCCCA
32	195	Improved	CCCCA\|CCCCA
33	197	Improved	CCCCA\|CCCCA
34	J22	Landrace	CCCCA\|CCCCA
35	J26	Landrace	CCCCA\|CCCCA
36	J5	Landrace	CCCCA\|CCCCA
37	J50	Landrace	CCCCA\|CCCCA
38	2001	Landrace	N\|N
39	2005	Improved	N\|N
40	2008	Improved	CCCCA\|CCCCA
41	2009	Landrace	CCCCA\|CCCCA
42	201	Improved	CCCCA\|CCCCA
43	2010	Landrace	CCCCA\|CCCCA
44	2016	Improved	N\|N
45	2019	Improved	CCCCA\|CCCCA
46	202	Improved	CCCCA\|CCCCA
47	2021	Improved	CCCCA\|CCCCA
48	2023	Improved	CCCCA\|CCCCA
49	2026	Improved	CCCCA\|CCCCA
50	2029	Improved	CCCCA\|CCCCA
51	2030	Landrace	CCCCA\|CCCCA
52	2031	Landrace	CCCCA\|CCCCA
53	2036	Improved	N\|N
54	2037	Improved	CCCCA\|CCCCA
55	2038	Improved	N\|N
56	2039	Improved	CCCCA\|CCCCA
57	204	Improved	CCCCA\|CCCCA
58	2042	Improved	CCCCA\|CCCCA
59	2043	Improved	CCCCA\|CCCCA
60	2048	Improved	CCCCA\|CCCCA
61	2049	Improved	CCCCA\|CCCCA
62	205	Improved	CCCCA\|CCCCA
63	2050	Improved	CCCCA\|CCCCA
64	2052	Improved	CCCCA\|CCCCA
65	2054	Improved	CCCCA\|CCCCA
66	2056	Improved	CCCCA\|CCCCA
67	2059	Improved	N\|N
68	206	Improved	CCCCA\|CCCCA
69	2064	Improved	CCCCA\|CCCCA
70	2065	Improved	CCCCA\|CCCCA
71	2067	Improved	N\|N
72	2068	Improved	CCCCA\|CCCCA
73	2069	Improved	CCCCA\|CCCCA
74	2071	Improved	CCCCA\|CCCCA
75	2074	Improved	CCCCA\|CCCCA
76	2075	Improved	CCCCA\|CCCCA
77	2076	Improved	CCCCA\|CCCCA
78	2080	Improved	CCCCA\|CCCCA
79	2081	Improved	CCCCA\|CCCCA
80	2082	Improved	CCCCA\|CCCCA
81	2086	Improved	N\|N
82	2088	Improved	CCCCA\|CCCCA
83	260	Wild sorghum	CCCCA\|CCCCA
84	261	Improved	CCCCA\|CCCCA
85	262	Improved	CCCCA\|CCCCA
86	263	Improved	CCCCA\|CCCCA
87	286	Improved	CCCCA\|CCCCA
88	29	Improved	CCCCA\|CCCCA
89	3	Improved	CCCCA\|CCCCA
90	302546	S.propinquum	N\|N
91	31	Improved	CCCCA\|CCCCA
92	32	Improved	CCCCA\|CCCCA
93	34	Improved	N\|N
94	346	Landrace	CCCCA\|CCCCA
95	348	Wild sorghum	CCCCA\|CCCCA
96	353	Wild sorghum	CCCCA\|CCCCA
97	355	Wild sorghum	CCCCA\|CCCCA
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	CCCCA\|CCCCA
100	367	Landrace	CCCCA\|CCCCA
101	s37	S.propinquum	CCCCA\|CCCCA
102	s38	S.propinquum	CCCCA\|CCCCA
103	370	Landrace	N\|N
104	377	Wild sorghum	CCCCA\|CCCCA
105	392	Wild sorghum	CCCCA\|CCCCA
106	394	Wild sorghum	N\|N
107	40	Improved	CCCCA\|CCCCA
108	42	Improved	N\|N
109	43	Improved	CCCCA\|CCCCA
110	45	Improved	CCCCA\|CCCCA
111	47	Improved	CCCCA\|CCCCA
112	48	Improved	CCCCA\|CCCCA
113	51	Improved	CCCCA\|CCCCA
114	53	Improved	CCCCA\|CCCCA
115	56	Improved	CCCCA\|CCCCA
116	61	Improved	CCCCA\|CCCCA
117	62	Improved	CCCCA\|CCCCA
118	66	Landrace	CCCCA\|CCCCA
119	67	Improved	N\|N
120	68	Improved	CCCCA\|CCCCA
121	70	Improved	CCCCA\|CCCCA
122	73	Improved	N\|N
123	75	Improved	CCCCA\|CCCCA
124	88	Improved	CCCCA\|CCCCA
125	89	Improved	CCCCA\|CCCCA
126	91	Improved	CCCCA\|CCCCA
127	92	Improved	CCCCA\|CCCCA
128	93	Improved	CCCCA\|CCCCA
129	94	Improved	CCCCA\|CCCCA
130	95	Improved	N\|N
131	96	Improved	CCCCA\|CCCCA
132	97	Improved	CCCCA\|CCCCA
133	s1	Improved	CCCCA\|CCCCA
134	s36	Wild sorghum	CCCCA\|CCCCA
135	s2	Landrace	CCCCA\|CCCCA
136	s3	Improved	CCCCA\|CCCCA
137	s32	Improved	CCCCA\|CCCCA
138	s43	Weedy	CCCCA\|CCCCA
139	s40	Landrace	CCCCA\|CCCCA
140	s41	Weedy	CCCCA\|CCCCA
141	s39	Landrace	CCCCA\|CCCCA
142	s42	Landrace	CCCCA\|CCCCA
143	s47	Improved	CCCCA\|CCCCA
144	s5	Landrace	CCCCA\|CCCCA
145	GW102	Landrace	CCCCA\|CCCCA
146	GW103	Landrace	CCCCA\|CCCCA
147	GW104	Landrace	CCCCA\|CCCCA
148	GW105	Landrace	CCCCA\|CCCCA
149	GW16	Landrace	CCCCA\|CCCCA
150	GW2	Landrace	CCCCA\|CCCCA
151	GW34	Landrace	CCCCA\|CCCCA
152	GW37	Landrace	CCCCA\|CCCCA
153	GW58	Landrace	CCCCA\|CCCCA
154	GW59	Landrace	CCCCA\|CCCCA
155	GW9	Landrace	CCCCA\|CCCCA
156	s4	Weedy	CCCCA\|CCCCA
157	s6	Improved	CCCCA\|CCCCA
158	s7	Landrace	CCCCA\|CCCCA
159	s8	Landrace	CCCCA\|CCCCA
160	s9	Landrace	CCCCA\|CCCCA
161	J101	Landrace	CCCCA\|CCCCA
162	J103	Improved	CCCCA\|CCCCA
163	J112	Landrace	CCCCA\|CCCCA
164	J113	Improved	CCCCA\|CCCCA
165	J129	Improved	CCCCA\|CCCCA
166	J130	Improved	CCCCA\|CCCCA
167	J136	Improved	CCCCA\|CCCCA
168	J152	Improved	CCCCA\|CCCCA
169	J2	Landrace	CCCCA\|CCCCA
170	J20	Landrace	CCCCA\|CCCCA
171	J4	Landrace	CCCCA\|CCCCA
172	J42	Landrace	CCCCA\|CCCCA
173	J44	Landrace	CCCCA\|CCCCA
174	J49	Landrace	CCCCA\|CCCCA
175	J52	Landrace	CCCCA\|CCCCA
176	J53	Landrace	CCCCA\|CCCCA
177	J54	Landrace	CCCCA\|CCCCA
178	J57	Landrace	CCCCA\|CCCCA
179	J59	Landrace	CCCCA\|CCCCA
180	J64	Landrace	CCCCA\|CCCCA
181	J66	Landrace	CCCCA\|CCCCA
182	J67	Landrace	CCCCA\|CCCCA
183	J69	Landrace	CCCCA\|CCCCA
184	J87	Landrace	CCCCA\|CCCCA
185	J99	Landrace	CCCCA\|CCCCA
186	s45	Landrace	CCCCA\|CCCCA
187	s11	Improved	CCCCA\|CCCCA
188	s10	Improved	CCCCA\|CCCCA
189	s46	Improved	CCCCA\|CCCCA
190	s12	Improved	CCCCA\|CCCCA
191	s13	Landrace	CCCCA\|CCCCA
192	MHMD	Landrace	CCCCA\|CCCCA
193	s14	Improved	CCCCA\|CCCCA
194	s15	Improved	CCCCA\|CCCCA
195	s34	Weedy	CCCCA\|CCCCA
196	s33	Wild sorghum	CCCCA\|CCCCA
197	s21	Wild sorghum	CCCCA\|CCCCA
198	s16	Wild sorghum	CCCCA\|CCCCA
199	s44	Improved	CCCCA\|CCCCA
200	s35	Landrace	CCCCA\|CCCCA
201	s31	Wild sorghum	CCCCA\|CCCCA
202	s17	Improved	CCCCA\|CCCCA
203	s18	Improved	CCCCA\|CCCCA
204	s20	Improved	CCCCA\|CCCCA
205	s19	Improved	CCCCA\|CCCCA
206	s22	Landrace	CCCCA\|CCCCA
207	s23	Landrace	CCCCA\|CCCCA
208	s24	Landrace	CCCCA\|CCCCA
209	s25	Landrace	CCCCA\|CCCCA
210	s26	Landrace	CCCCA\|CCCCA
211	s27	Landrace	CCCCA\|CCCCA
212	s28	Landrace	CCCCA\|CCCCA
213	s29	Landrace	CCCCA\|CCCCA
214	s30	Landrace	CCCCA\|CCCCA
215	SL25	Wild sorghum	CCCCA\|CCCCA
216	SL105	Wild sorghum	CCCCA\|CCCCA
217	SL108	Wild sorghum	CCCCA\|CCCCA
218	SL109	Wild sorghum	CCCCA\|CCCCA
219	SL12	Wild sorghum	CCCCA\|CCCCA
220	SL129	Wild sorghum	CCCCA\|CCCCA
221	SL130	Wild sorghum	CCCCA\|CCCCA
222	SL135	Wild sorghum	CCCCA\|CCCCA
223	SL136	Wild sorghum	CCCCA\|CCCCA
224	SL137	Wild sorghum	CCCCA\|CCCCA
225	SL138	Wild sorghum	CCCCA\|CCCCA
226	SL140	Wild sorghum	CCCCA\|CCCCA
227	SL141	Wild sorghum	CCCCA\|CCCCA
228	SL19	Wild sorghum	CCCCA\|CCCCA
229	SL28	Wild sorghum	CCCCA\|CCCCA
230	SL32	Wild sorghum	C\|C
231	SL35	Wild sorghum	CCCCA\|CCCCA
232	SL36	Wild sorghum	CCCCA\|CCCCA
233	SL37	Wild sorghum	CCCCA\|CCCCA
234	SL39	Wild sorghum	CCCCA\|CCCCA
235	SL41	Wild sorghum	CCCCA\|CCCCA
236	SL43	Wild sorghum	CCCCA\|CCCCA
237	SL47	Wild sorghum	CCCCA\|CCCCA
238	SL49	Wild sorghum	CCCCA\|CCCCA
239	SL51	Wild sorghum	CCCCA\|CCCCA
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	CCCCA\|CCCCA
242	SL83	Wild sorghum	CCCCA\|CCCCA
243	SL97	Landrace	CCCCA\|CCCCA
244	s48	Improved	CCCCA\|CCCCA
245	Tu13	Wild sorghum	CCCCA\|CCCCA
246	Tu14	Wild sorghum	CCCCA\|CCCCA
247	Tu30	Wild sorghum	CCCCA\|CCCCA
248	Tu5	Wild sorghum	N\|N
249	WSC5	Landrace	CCCCA\|CCCCA
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	CCCCA\|CCCCA
252	WSC30	Landrace	CCCCA\|CCCCA
253	WSC52	Landrace	CCCCA\|CCCCA
254	WSC6	Landrace	CCCCA\|CCCCA
255	WSC61	Landrace	CCCCA\|CCCCA
256	WSC71	Improved	CCCCA\|CCCCA
257	WSC72	Landrace	CCCCA\|CCCCA
258	WSC79	Landrace	CCCCA\|CCCCA
259	WSC94	Landrace	CCCCA\|CCCCA
260	WSC99	Landrace	CCCCA\|CCCCA
261	WSC100	Landrace	CCCCA\|CCCCA
262	WSC104	Landrace	CCCCA\|CCCCA
263	WSC105	Landrace	CCCCA\|CCCCA
264	WSC12	Landrace	CCCCA\|CCCCA
265	WSC13	Landrace	CCCCA\|CCCCA
266	WSC16	Landrace	CCCCA\|CCCCA
267	WSC17	Landrace	CCCCA\|CCCCA
268	WSC18	Landrace	CCCCA\|CCCCA
269	WSC20	Landrace	CCCCA\|CCCCA
270	WSC24	Landrace	CCCCA\|CCCCA
271	WSC25	Landrace	CCCCA\|CCCCA
272	WSC29	Landrace	CCCCA\|CCCCA
273	WSC31	Landrace	CCCCA\|CCCCA
274	WSC32	Landrace	N\|N
275	WSC34	Landrace	CCCCA\|CCCCA
276	WSC38	Landrace	CCCCA\|CCCCA
277	WSC39	Improved	CCCCA\|CCCCA
278	WSC40	Landrace	CCCCA\|CCCCA
279	WSC54	Landrace	CCCCA\|CCCCA
280	WSC56	Landrace	CCCCA\|CCCCA
281	WSC59	Landrace	CCCCA\|CCCCA
282	WSC68	Landrace	CCCCA\|CCCCA
283	WSC70	Landrace	CCCCA\|CCCCA
284	WSC73	Landrace	CCCCA\|CCCCA
285	WSC81	Landrace	CCCCA\|CCCCA
286	WSC85	Improved	CCCCA\|CCCCA
287	WSC91	Landrace	CCCCA\|CCCCA
288	WSC93	Landrace	CCCCA\|CCCCA
289	WSC98	Landrace	CCCCA\|CCCCA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825455	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825455	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825455	Sobic.001G000300	downstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825455	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825455	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825455	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825455	Sobic.001G000400	downstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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