Variation ID : sbi33825459

Variation Detail



Variation ID sbi33825459
Type INDEL
Position Chr01 21882-21884
Ref /Alleles CCT/ C
MAF C: 0.010
5' Flank ATTCTACACTTAGAGTGTAGAATAGCGCTA
3' Flank AGAGAGAGAATGTGTGTGTGTGTTTTTTAC

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved CCT|CCT
4 11 Improved CCT|CCT
5 110 Improved CCT|CCT
6 123 Landrace N|N
7 131 Improved CCT|CCT
8 132 Improved N|N
9 135 Improved N|N
10 137 Improved CCT|CCT
11 138 Improved CCT|CCT
12 14 Improved CCT|CCT
13 140 Improved CCT|CCT
14 141 Improved N|N
15 144 Improved N|N
16 150 Improved N|N
17 154 Improved N|N
18 159 Landrace CCT|CCT
19 16 Improved N|N
20 161 Landrace CCT|CCT
21 167 Improved CCT|CCT
22 168 Improved CCT|CCT
23 170 Improved N|N
24 173 Improved N|N
25 175 Improved CCT|CCT
26 176 Improved CCT|CCT
27 182 Landrace CCT|CCT
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved CCT|CCT
31 194 Improved CCT|CCT
32 195 Improved CCT|CCT
33 197 Improved CCT|CCT
34 J22 Landrace N|N
35 J26 Landrace CCT|CCT
36 J5 Landrace CCT|CCT
37 J50 Landrace CCT|CCT
38 2001 Landrace CCT|CCT
39 2005 Improved N|N
40 2008 Improved CCT|CCT
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace N|N
44 2016 Improved N|N
45 2019 Improved CCT|CCT
46 202 Improved CCT|CCT
47 2021 Improved CCT|CCT
48 2023 Improved N|N
49 2026 Improved CCT|CCT
50 2029 Improved CCT|CCT
51 2030 Landrace N|N
52 2031 Landrace CCT|CCT
53 2036 Improved CCT|CCT
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved CCT|CCT
57 204 Improved CCT|CCT
58 2042 Improved CCT|CCT
59 2043 Improved CCT|CCT
60 2048 Improved CCT|CCT
61 2049 Improved CCT|CCT
62 205 Improved N|N
63 2050 Improved C|C
64 2052 Improved CCT|CCT
65 2054 Improved CCT|CCT
66 2056 Improved N|N
67 2059 Improved CCT|CCT
68 206 Improved CCT|CCT
69 2064 Improved CCT|CCT
70 2065 Improved CCT|CCT
71 2067 Improved CCT|CCT
72 2068 Improved CCT|CCT
73 2069 Improved CCT|CCT
74 2071 Improved N|N
75 2074 Improved CCT|CCT
76 2075 Improved CCT|CCT
77 2076 Improved CCT|CCT
78 2080 Improved CCT|CCT
79 2081 Improved CCT|CCT
80 2082 Improved CCT|CCT
81 2086 Improved CCT|CCT
82 2088 Improved CCT|CCT
83 260 Wild sorghum CCT|CCT
84 261 Improved CCT|CCT
85 262 Improved CCT|CCT
86 263 Improved CCT|CCT
87 286 Improved CCT|CCT
88 29 Improved N|N
89 3 Improved CCT|CCT
90 302546 S.propinquum N|N
91 31 Improved CCT|CCT
92 32 Improved CCT|CCT
93 34 Improved N|N
94 346 Landrace CCT|CCT
95 348 Wild sorghum CCT|CCT
96 353 Wild sorghum CCT|CCT
97 355 Wild sorghum CCT|CCT
98 357 Wild sorghum CCT|CCT
99 364 Wild sorghum N|N
100 367 Landrace CCT|CCT
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace CCT|CCT
104 377 Wild sorghum N|N
105 392 Wild sorghum CCT|CCT
106 394 Wild sorghum CCT|CCT
107 40 Improved CCT|CCT
108 42 Improved N|N
109 43 Improved N|N
110 45 Improved N|N
111 47 Improved CCT|CCT
112 48 Improved N|N
113 51 Improved N|N
114 53 Improved N|N
115 56 Improved CCT|CCT
116 61 Improved CCT|CCT
117 62 Improved CCT|CCT
118 66 Landrace CCT|CCT
119 67 Improved CCT|CCT
120 68 Improved CCT|CCT
121 70 Improved CCT|CCT
122 73 Improved CCT|CCT
123 75 Improved CCT|CCT
124 88 Improved N|N
125 89 Improved CCT|CCT
126 91 Improved CCT|CCT
127 92 Improved N|N
128 93 Improved CCT|CCT
129 94 Improved N|N
130 95 Improved N|N
131 96 Improved CCT|CCT
132 97 Improved N|N
133 s1 Improved CCT|CCT
134 s36 Wild sorghum CCT|CCT
135 s2 Landrace CCT|CCT
136 s3 Improved CCT|CCT
137 s32 Improved CCT|CCT
138 s43 Weedy CCT|CCT
139 s40 Landrace CCT|CCT
140 s41 Weedy CCT|CCT
141 s39 Landrace CCT|CCT
142 s42 Landrace CCT|CCT
143 s47 Improved CCT|CCT
144 s5 Landrace CCT|CCT
145 GW102 Landrace CCT|CCT
146 GW103 Landrace CCT|CCT
147 GW104 Landrace CCT|CCT
148 GW105 Landrace N|N
149 GW16 Landrace CCT|CCT
150 GW2 Landrace CCT|CCT
151 GW34 Landrace N|N
152 GW37 Landrace CCT|CCT
153 GW58 Landrace N|N
154 GW59 Landrace CCT|CCT
155 GW9 Landrace CCT|CCT
156 s4 Weedy CCT|CCT
157 s6 Improved CCT|CCT
158 s7 Landrace CCT|CCT
159 s8 Landrace CCT|CCT
160 s9 Landrace CCT|CCT
161 J101 Landrace CCT|CCT
162 J103 Improved CCT|CCT
163 J112 Landrace N|N
164 J113 Improved CCT|CCT
165 J129 Improved CCT|CCT
166 J130 Improved CCT|CCT
167 J136 Improved CCT|CCT
168 J152 Improved CCT|CCT
169 J2 Landrace N|N
170 J20 Landrace CCT|CCT
171 J4 Landrace CCT|CCT
172 J42 Landrace CCT|CCT
173 J44 Landrace CCT|CCT
174 J49 Landrace CCT|CCT
175 J52 Landrace CCT|CCT
176 J53 Landrace CCT|CCT
177 J54 Landrace CCT|CCT
178 J57 Landrace CCT|CCT
179 J59 Landrace CCT|CCT
180 J64 Landrace CCT|CCT
181 J66 Landrace CCT|CCT
182 J67 Landrace CCT|CCT
183 J69 Landrace CCT|CCT
184 J87 Landrace CCT|CCT
185 J99 Landrace CCT|CCT
186 s45 Landrace CCT|CCT
187 s11 Improved CCT|CCT
188 s10 Improved CCT|CCT
189 s46 Improved CCT|CCT
190 s12 Improved CCT|CCT
191 s13 Landrace CCT|CCT
192 MHMD Landrace N|N
193 s14 Improved CCT|CCT
194 s15 Improved CCT|CCT
195 s34 Weedy CCT|CCT
196 s33 Wild sorghum C|C
197 s21 Wild sorghum CCT|CCT
198 s16 Wild sorghum CCT|CCT
199 s44 Improved CCT|CCT
200 s35 Landrace CCT|CCT
201 s31 Wild sorghum CCT|CCT
202 s17 Improved CCT|CCT
203 s18 Improved CCT|CCT
204 s20 Improved CCT|CCT
205 s19 Improved CCT|CCT
206 s22 Landrace CCT|CCT
207 s23 Landrace CCT|CCT
208 s24 Landrace CCT|CCT
209 s25 Landrace CCT|CCT
210 s26 Landrace CCT|CCT
211 s27 Landrace CCT|CCT
212 s28 Landrace CCT|CCT
213 s29 Landrace CCT|CCT
214 s30 Landrace CCT|CCT
215 SL25 Wild sorghum CCT|CCT
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum CCT|CCT
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum CCT|CCT
222 SL135 Wild sorghum CCT|CCT
223 SL136 Wild sorghum CCT|CCT
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum CCT|CCT
226 SL140 Wild sorghum N|N
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum CCT|CCT
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum CCT|CCT
235 SL41 Wild sorghum CCT|CCT
236 SL43 Wild sorghum CCT|CCT
237 SL47 Wild sorghum CCT|CCT
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum CCT|CCT
240 SL53 Wild sorghum CCT|CCT
241 SL62 Wild sorghum N|N
242 SL83 Wild sorghum CCT|CCT
243 SL97 Landrace N|N
244 s48 Improved CCT|CCT
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum CCT|CCT
248 Tu5 Wild sorghum CCT|CCT
249 WSC5 Landrace CCT|CCT
250 WSC15 Landrace CCT|CCT
251 WSC19 Landrace CCT|CCT
252 WSC30 Landrace CCT|CCT
253 WSC52 Landrace CCT|CCT
254 WSC6 Landrace CCT|CCT
255 WSC61 Landrace CCT|CCT
256 WSC71 Improved CCT|CCT
257 WSC72 Landrace CCT|CCT
258 WSC79 Landrace N|N
259 WSC94 Landrace CCT|CCT
260 WSC99 Landrace N|N
261 WSC100 Landrace N|N
262 WSC104 Landrace N|N
263 WSC105 Landrace CCT|CCT
264 WSC12 Landrace CCT|CCT
265 WSC13 Landrace CCT|CCT
266 WSC16 Landrace CCT|CCT
267 WSC17 Landrace CCT|CCT
268 WSC18 Landrace CCT|CCT
269 WSC20 Landrace CCT|CCT
270 WSC24 Landrace CCT|CCT
271 WSC25 Landrace CCT|CCT
272 WSC29 Landrace N|N
273 WSC31 Landrace CCT|CCT
274 WSC32 Landrace CCT|CCT
275 WSC34 Landrace CCT|CCT
276 WSC38 Landrace N|N
277 WSC39 Improved CCT|CCT
278 WSC40 Landrace CCT|CCT
279 WSC54 Landrace CCT|CCT
280 WSC56 Landrace CCT|CCT
281 WSC59 Landrace N|N
282 WSC68 Landrace CCT|CCT
283 WSC70 Landrace CCT|CCT
284 WSC73 Landrace CCT|CCT
285 WSC81 Landrace N|N
286 WSC85 Improved N|N
287 WSC91 Landrace N|N
288 WSC93 Landrace N|N
289 WSC98 Landrace N|N

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825459 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825459 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825459 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825459 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825459 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825459 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825459 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser