Variation ID : sbi33825462

Variation Detail



Variation ID sbi33825462
Type INDEL
Position Chr01 21904-21908
Ref /Alleles GTGTT/ G
MAF G: 0.004
5' Flank TAGCGCTACCTAGAGAGAGAATGTGTGTGT
3' Flank TTTTACTCGTACGAGTAGCTACTCGCACTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved GTGTT|GTGTT
3 107 Improved GTGTT|GTGTT
4 11 Improved GTGTT|GTGTT
5 110 Improved GTGTT|GTGTT
6 123 Landrace N|N
7 131 Improved GTGTT|GTGTT
8 132 Improved GTGTT|GTGTT
9 135 Improved GTGTT|GTGTT
10 137 Improved GTGTT|GTGTT
11 138 Improved GTGTT|GTGTT
12 14 Improved GTGTT|GTGTT
13 140 Improved GTGTT|GTGTT
14 141 Improved GTGTT|GTGTT
15 144 Improved N|N
16 150 Improved GTGTT|GTGTT
17 154 Improved GTGTT|GTGTT
18 159 Landrace GTGTT|GTGTT
19 16 Improved N|N
20 161 Landrace GTGTT|GTGTT
21 167 Improved GTGTT|GTGTT
22 168 Improved GTGTT|GTGTT
23 170 Improved GTGTT|GTGTT
24 173 Improved GTGTT|GTGTT
25 175 Improved GTGTT|GTGTT
26 176 Improved GTGTT|GTGTT
27 182 Landrace GTGTT|GTGTT
28 186 Improved N|N
29 190 Improved GTGTT|GTGTT
30 192 Improved GTGTT|GTGTT
31 194 Improved GTGTT|GTGTT
32 195 Improved GTGTT|GTGTT
33 197 Improved GTGTT|GTGTT
34 J22 Landrace N|N
35 J26 Landrace GTGTT|GTGTT
36 J5 Landrace GTGTT|GTGTT
37 J50 Landrace GTGTT|GTGTT
38 2001 Landrace GTGTT|GTGTT
39 2005 Improved N|N
40 2008 Improved GTGTT|GTGTT
41 2009 Landrace N|N
42 201 Improved GTGTT|GTGTT
43 2010 Landrace GTGTT|GTGTT
44 2016 Improved N|N
45 2019 Improved GTGTT|GTGTT
46 202 Improved GTGTT|GTGTT
47 2021 Improved GTGTT|GTGTT
48 2023 Improved N|N
49 2026 Improved GTGTT|GTGTT
50 2029 Improved N|N
51 2030 Landrace GTGTT|GTGTT
52 2031 Landrace GTGTT|GTGTT
53 2036 Improved GTGTT|GTGTT
54 2037 Improved GTGTT|GTGTT
55 2038 Improved GTGTT|GTGTT
56 2039 Improved GTGTT|GTGTT
57 204 Improved GTGTT|GTGTT
58 2042 Improved GTGTT|GTGTT
59 2043 Improved GTGTT|GTGTT
60 2048 Improved GTGTT|GTGTT
61 2049 Improved GTGTT|GTGTT
62 205 Improved N|N
63 2050 Improved GTGTT|GTGTT
64 2052 Improved GTGTT|GTGTT
65 2054 Improved N|N
66 2056 Improved N|N
67 2059 Improved GTGTT|GTGTT
68 206 Improved GTGTT|GTGTT
69 2064 Improved GTGTT|GTGTT
70 2065 Improved GTGTT|GTGTT
71 2067 Improved GTGTT|GTGTT
72 2068 Improved GTGTT|GTGTT
73 2069 Improved N|N
74 2071 Improved GTGTT|GTGTT
75 2074 Improved GTGTT|GTGTT
76 2075 Improved N|N
77 2076 Improved GTGTT|GTGTT
78 2080 Improved GTGTT|GTGTT
79 2081 Improved GTGTT|GTGTT
80 2082 Improved GTGTT|GTGTT
81 2086 Improved GTGTT|GTGTT
82 2088 Improved GTGTT|GTGTT
83 260 Wild sorghum GTGTT|GTGTT
84 261 Improved GTGTT|GTGTT
85 262 Improved GTGTT|GTGTT
86 263 Improved GTGTT|GTGTT
87 286 Improved GTGTT|GTGTT
88 29 Improved GTGTT|GTGTT
89 3 Improved GTGTT|GTGTT
90 302546 S.propinquum N|N
91 31 Improved GTGTT|GTGTT
92 32 Improved GTGTT|GTGTT
93 34 Improved N|N
94 346 Landrace GTGTT|GTGTT
95 348 Wild sorghum GTGTT|GTGTT
96 353 Wild sorghum GTGTT|GTGTT
97 355 Wild sorghum GTGTT|GTGTT
98 357 Wild sorghum GTGTT|GTGTT
99 364 Wild sorghum N|N
100 367 Landrace GTGTT|GTGTT
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace GTGTT|GTGTT
104 377 Wild sorghum GTGTT|GTGTT
105 392 Wild sorghum GTGTT|GTGTT
106 394 Wild sorghum GTGTT|GTGTT
107 40 Improved GTGTT|GTGTT
108 42 Improved GTGTT|GTGTT
109 43 Improved GTGTT|GTGTT
110 45 Improved GTGTT|GTGTT
111 47 Improved GTGTT|GTGTT
112 48 Improved N|N
113 51 Improved GTGTT|GTGTT
114 53 Improved GTGTT|GTGTT
115 56 Improved GTGTT|GTGTT
116 61 Improved GTGTT|GTGTT
117 62 Improved GTGTT|GTGTT
118 66 Landrace GTGTT|GTGTT
119 67 Improved GTGTT|GTGTT
120 68 Improved GTGTT|GTGTT
121 70 Improved GTGTT|GTGTT
122 73 Improved GTGTT|GTGTT
123 75 Improved GTGTT|GTGTT
124 88 Improved GTGTT|GTGTT
125 89 Improved GTGTT|GTGTT
126 91 Improved GTGTT|GTGTT
127 92 Improved GTGTT|GTGTT
128 93 Improved GTGTT|GTGTT
129 94 Improved GTGTT|GTGTT
130 95 Improved GTGTT|GTGTT
131 96 Improved GTGTT|GTGTT
132 97 Improved GTGTT|GTGTT
133 s1 Improved GTGTT|GTGTT
134 s36 Wild sorghum GTGTT|GTGTT
135 s2 Landrace GTGTT|GTGTT
136 s3 Improved GTGTT|GTGTT
137 s32 Improved GTGTT|GTGTT
138 s43 Weedy GTGTT|GTGTT
139 s40 Landrace GTGTT|GTGTT
140 s41 Weedy GTGTT|GTGTT
141 s39 Landrace GTGTT|GTGTT
142 s42 Landrace GTGTT|GTGTT
143 s47 Improved GTGTT|GTGTT
144 s5 Landrace GTGTT|GTGTT
145 GW102 Landrace GTGTT|GTGTT
146 GW103 Landrace GTGTT|GTGTT
147 GW104 Landrace GTGTT|GTGTT
148 GW105 Landrace GTGTT|GTGTT
149 GW16 Landrace GTGTT|GTGTT
150 GW2 Landrace GTGTT|GTGTT
151 GW34 Landrace N|N
152 GW37 Landrace GTGTT|GTGTT
153 GW58 Landrace GTGTT|GTGTT
154 GW59 Landrace GTGTT|GTGTT
155 GW9 Landrace GTGTT|GTGTT
156 s4 Weedy GTGTT|GTGTT
157 s6 Improved GTGTT|GTGTT
158 s7 Landrace GTGTT|GTGTT
159 s8 Landrace GTGTT|GTGTT
160 s9 Landrace GTGTT|GTGTT
161 J101 Landrace GTGTT|GTGTT
162 J103 Improved GTGTT|GTGTT
163 J112 Landrace N|N
164 J113 Improved GTGTT|GTGTT
165 J129 Improved GTGTT|GTGTT
166 J130 Improved GTGTT|GTGTT
167 J136 Improved GTGTT|GTGTT
168 J152 Improved GTGTT|GTGTT
169 J2 Landrace N|N
170 J20 Landrace GTGTT|GTGTT
171 J4 Landrace GTGTT|GTGTT
172 J42 Landrace GTGTT|GTGTT
173 J44 Landrace GTGTT|GTGTT
174 J49 Landrace GTGTT|GTGTT
175 J52 Landrace GTGTT|GTGTT
176 J53 Landrace GTGTT|GTGTT
177 J54 Landrace GTGTT|GTGTT
178 J57 Landrace GTGTT|GTGTT
179 J59 Landrace GTGTT|GTGTT
180 J64 Landrace GTGTT|GTGTT
181 J66 Landrace GTGTT|GTGTT
182 J67 Landrace GTGTT|GTGTT
183 J69 Landrace GTGTT|GTGTT
184 J87 Landrace GTGTT|GTGTT
185 J99 Landrace GTGTT|GTGTT
186 s45 Landrace GTGTT|GTGTT
187 s11 Improved N|N
188 s10 Improved GTGTT|GTGTT
189 s46 Improved GTGTT|GTGTT
190 s12 Improved GTGTT|GTGTT
191 s13 Landrace GTGTT|GTGTT
192 MHMD Landrace GTGTT|GTGTT
193 s14 Improved GTGTT|GTGTT
194 s15 Improved GTGTT|GTGTT
195 s34 Weedy G|G
196 s33 Wild sorghum GTGTT|GTGTT
197 s21 Wild sorghum GTGTT|GTGTT
198 s16 Wild sorghum GTGTT|GTGTT
199 s44 Improved GTGTT|GTGTT
200 s35 Landrace GTGTT|GTGTT
201 s31 Wild sorghum GTGTT|GTGTT
202 s17 Improved GTGTT|GTGTT
203 s18 Improved GTGTT|GTGTT
204 s20 Improved GTGTT|GTGTT
205 s19 Improved GTGTT|GTGTT
206 s22 Landrace GTGTT|GTGTT
207 s23 Landrace GTGTT|GTGTT
208 s24 Landrace N|N
209 s25 Landrace GTGTT|GTGTT
210 s26 Landrace GTGTT|GTGTT
211 s27 Landrace GTGTT|GTGTT
212 s28 Landrace GTGTT|GTGTT
213 s29 Landrace GTGTT|GTGTT
214 s30 Landrace GTGTT|GTGTT
215 SL25 Wild sorghum GTGTT|GTGTT
216 SL105 Wild sorghum GTGTT|GTGTT
217 SL108 Wild sorghum GTGTT|GTGTT
218 SL109 Wild sorghum GTGTT|GTGTT
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum GTGTT|GTGTT
221 SL130 Wild sorghum GTGTT|GTGTT
222 SL135 Wild sorghum GTGTT|GTGTT
223 SL136 Wild sorghum GTGTT|GTGTT
224 SL137 Wild sorghum GTGTT|GTGTT
225 SL138 Wild sorghum GTGTT|GTGTT
226 SL140 Wild sorghum GTGTT|GTGTT
227 SL141 Wild sorghum GTGTT|GTGTT
228 SL19 Wild sorghum GTGTT|GTGTT
229 SL28 Wild sorghum GTGTT|GTGTT
230 SL32 Wild sorghum GTGTT|GTGTT
231 SL35 Wild sorghum GTGTT|GTGTT
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum GTGTT|GTGTT
234 SL39 Wild sorghum GTGTT|GTGTT
235 SL41 Wild sorghum GTGTT|GTGTT
236 SL43 Wild sorghum GTGTT|GTGTT
237 SL47 Wild sorghum GTGTT|GTGTT
238 SL49 Wild sorghum GTGTT|GTGTT
239 SL51 Wild sorghum GTGTT|GTGTT
240 SL53 Wild sorghum GTGTT|GTGTT
241 SL62 Wild sorghum GTGTT|GTGTT
242 SL83 Wild sorghum GTGTT|GTGTT
243 SL97 Landrace GTGTT|GTGTT
244 s48 Improved GTGTT|GTGTT
245 Tu13 Wild sorghum GTGTT|GTGTT
246 Tu14 Wild sorghum GTGTT|GTGTT
247 Tu30 Wild sorghum GTGTT|GTGTT
248 Tu5 Wild sorghum GTGTT|GTGTT
249 WSC5 Landrace GTGTT|GTGTT
250 WSC15 Landrace N|N
251 WSC19 Landrace GTGTT|GTGTT
252 WSC30 Landrace GTGTT|GTGTT
253 WSC52 Landrace GTGTT|GTGTT
254 WSC6 Landrace N|N
255 WSC61 Landrace GTGTT|GTGTT
256 WSC71 Improved GTGTT|GTGTT
257 WSC72 Landrace GTGTT|GTGTT
258 WSC79 Landrace N|N
259 WSC94 Landrace GTGTT|GTGTT
260 WSC99 Landrace GTGTT|GTGTT
261 WSC100 Landrace GTGTT|GTGTT
262 WSC104 Landrace GTGTT|GTGTT
263 WSC105 Landrace GTGTT|GTGTT
264 WSC12 Landrace GTGTT|GTGTT
265 WSC13 Landrace GTGTT|GTGTT
266 WSC16 Landrace GTGTT|GTGTT
267 WSC17 Landrace GTGTT|GTGTT
268 WSC18 Landrace GTGTT|GTGTT
269 WSC20 Landrace GTGTT|GTGTT
270 WSC24 Landrace GTGTT|GTGTT
271 WSC25 Landrace GTGTT|GTGTT
272 WSC29 Landrace GTGTT|GTGTT
273 WSC31 Landrace GTGTT|GTGTT
274 WSC32 Landrace GTGTT|GTGTT
275 WSC34 Landrace GTGTT|GTGTT
276 WSC38 Landrace GTGTT|GTGTT
277 WSC39 Improved N|N
278 WSC40 Landrace GTGTT|GTGTT
279 WSC54 Landrace GTGTT|GTGTT
280 WSC56 Landrace GTGTT|GTGTT
281 WSC59 Landrace GTGTT|GTGTT
282 WSC68 Landrace GTGTT|GTGTT
283 WSC70 Landrace GTGTT|GTGTT
284 WSC73 Landrace GTGTT|GTGTT
285 WSC81 Landrace GTGTT|GTGTT
286 WSC85 Improved GTGTT|GTGTT
287 WSC91 Landrace GTGTT|GTGTT
288 WSC93 Landrace GTGTT|GTGTT
289 WSC98 Landrace GTGTT|GTGTT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825462 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825462 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825462 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825462 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825462 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825462 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825462 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser