Variation ID : sbi33825466

Variation Detail



Variation ID sbi33825466
Type INDEL
Position Chr01 21995-21996
Ref /Alleles GA/ GAA or G
MAF GAA: 0.079
5' Flank CCGCGAACGTTAACGGAAGGCTGTATATCA
3' Flank AAAAAAAATCCATTGACACATGTTGATTAC

Individual Alleles

id Sample Id Type Alleles
1 101 Improved GA|GA
2 103 Improved GA|GA
3 107 Improved GA|GA
4 11 Improved GA|GA
5 110 Improved GA|GA
6 123 Landrace N|N
7 131 Improved GA|GA
8 132 Improved N|N
9 135 Improved GA|GA
10 137 Improved GA|GA
11 138 Improved GA|GA
12 14 Improved N|N
13 140 Improved GA|GA
14 141 Improved N|N
15 144 Improved GA|GA
16 150 Improved N|N
17 154 Improved GA|GA
18 159 Landrace GA|GA
19 16 Improved N|N
20 161 Landrace GA|GA
21 167 Improved GA|GA
22 168 Improved GA|GA
23 170 Improved GA|GA
24 173 Improved GA|GA
25 175 Improved GA|GA
26 176 Improved GA|GA
27 182 Landrace GA|GA
28 186 Improved GA|GA
29 190 Improved GA|GA
30 192 Improved GA|GA
31 194 Improved GA|GA
32 195 Improved GA|GA
33 197 Improved GA|GA
34 J22 Landrace GA|GA
35 J26 Landrace GA|GA
36 J5 Landrace GA|GA
37 J50 Landrace GA|GA
38 2001 Landrace GA|GA
39 2005 Improved GA|GA
40 2008 Improved GA|GA
41 2009 Landrace N|N
42 201 Improved GA|GA
43 2010 Landrace GA|GA
44 2016 Improved GA|GA
45 2019 Improved GA|GA
46 202 Improved GA|GA
47 2021 Improved N|N
48 2023 Improved GA|GA
49 2026 Improved GA|GA
50 2029 Improved N|N
51 2030 Landrace GA|GA
52 2031 Landrace GA|GA
53 2036 Improved GA|GA
54 2037 Improved GA|GA
55 2038 Improved GA|GA
56 2039 Improved GA|GA
57 204 Improved GA|GA
58 2042 Improved GA|GA
59 2043 Improved GAA|GAA
60 2048 Improved GA|GA
61 2049 Improved GA|GA
62 205 Improved N|N
63 2050 Improved GA|GA
64 2052 Improved GA|GA
65 2054 Improved GA|GA
66 2056 Improved N|N
67 2059 Improved GAA|GAA
68 206 Improved GA|GA
69 2064 Improved GA|GA
70 2065 Improved GA|GA
71 2067 Improved GA|GA
72 2068 Improved GA|GA
73 2069 Improved GA|GA
74 2071 Improved GA|GA
75 2074 Improved N|N
76 2075 Improved GA|GA
77 2076 Improved GA|GA
78 2080 Improved GA|GA
79 2081 Improved GA|GA
80 2082 Improved GA|GA
81 2086 Improved GA|GA
82 2088 Improved GA|GA
83 260 Wild sorghum GA|GA
84 261 Improved GA|GA
85 262 Improved GA|GA
86 263 Improved GA|GA
87 286 Improved GA|GA
88 29 Improved GA|GA
89 3 Improved GA|GA
90 302546 S.propinquum N|N
91 31 Improved GA|GA
92 32 Improved GA|GA
93 34 Improved GA|GA
94 346 Landrace N|N
95 348 Wild sorghum GA|GA
96 353 Wild sorghum GAA|GAA
97 355 Wild sorghum GAA|GAA
98 357 Wild sorghum GA|GA
99 364 Wild sorghum GA|GA
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum GA|GA
103 370 Landrace GA|GA
104 377 Wild sorghum N|N
105 392 Wild sorghum GA|GA
106 394 Wild sorghum GA|GA
107 40 Improved GA|GA
108 42 Improved GA|GA
109 43 Improved GA|GA
110 45 Improved GA|GA
111 47 Improved N|N
112 48 Improved N|N
113 51 Improved GA|GA
114 53 Improved GA|GA
115 56 Improved GA|GA
116 61 Improved GA|GA
117 62 Improved N|N
118 66 Landrace GA|GA
119 67 Improved GAA|GAA
120 68 Improved GA|GA
121 70 Improved GA|GA
122 73 Improved GA|GA
123 75 Improved GA|GA
124 88 Improved GA|GA
125 89 Improved GA|GA
126 91 Improved GAA|GAA
127 92 Improved GA|GA
128 93 Improved GAA|GAA
129 94 Improved GA|GA
130 95 Improved GA|GA
131 96 Improved GA|GA
132 97 Improved GA|GA
133 s1 Improved GA|GA
134 s36 Wild sorghum GA|GA
135 s2 Landrace GA|GA
136 s3 Improved GA|GA
137 s32 Improved GA|GA
138 s43 Weedy GA|GA
139 s40 Landrace GA|GA
140 s41 Weedy GA|GA
141 s39 Landrace GA|GA
142 s42 Landrace GA|GA
143 s47 Improved GA|GA
144 s5 Landrace GA|GA
145 GW102 Landrace GA|GA
146 GW103 Landrace GA|GAA
147 GW104 Landrace GA|GA
148 GW105 Landrace GA|GA
149 GW16 Landrace N|N
150 GW2 Landrace GA|GA
151 GW34 Landrace GA|GA
152 GW37 Landrace GA|GA
153 GW58 Landrace GA|GA
154 GW59 Landrace GA|GA
155 GW9 Landrace N|N
156 s4 Weedy GA|GA
157 s6 Improved GA|GA
158 s7 Landrace GA|GA
159 s8 Landrace GA|GA
160 s9 Landrace GA|GA
161 J101 Landrace GA|GA
162 J103 Improved GA|GA
163 J112 Landrace GAA|GAA
164 J113 Improved GA|GA
165 J129 Improved GA|GA
166 J130 Improved GA|GA
167 J136 Improved N|N
168 J152 Improved GA|GA
169 J2 Landrace N|N
170 J20 Landrace GA|GA
171 J4 Landrace GA|GA
172 J42 Landrace GA|GA
173 J44 Landrace GA|GA
174 J49 Landrace N|N
175 J52 Landrace GA|GA
176 J53 Landrace GA|GA
177 J54 Landrace GA|GA
178 J57 Landrace GA|GA
179 J59 Landrace GA|GA
180 J64 Landrace GA|GA
181 J66 Landrace GA|GA
182 J67 Landrace N|N
183 J69 Landrace GA|GA
184 J87 Landrace GA|GA
185 J99 Landrace N|N
186 s45 Landrace GA|GA
187 s11 Improved GAA|GAA
188 s10 Improved GA|GA
189 s46 Improved GA|GA
190 s12 Improved GA|GA
191 s13 Landrace GA|GA
192 MHMD Landrace GA|GA
193 s14 Improved GA|GA
194 s15 Improved GA|GA
195 s34 Weedy GA|GA
196 s33 Wild sorghum GA|GA
197 s21 Wild sorghum GA|GA
198 s16 Wild sorghum GA|GA
199 s44 Improved GA|GA
200 s35 Landrace GA|GA
201 s31 Wild sorghum GAA|GAA
202 s17 Improved GA|GA
203 s18 Improved GA|GA
204 s20 Improved GA|GA
205 s19 Improved GA|GA
206 s22 Landrace GA|GA
207 s23 Landrace GA|GA
208 s24 Landrace GAA|GAA
209 s25 Landrace GA|GA
210 s26 Landrace GA|GA
211 s27 Landrace GA|GA
212 s28 Landrace GA|GA
213 s29 Landrace G|G
214 s30 Landrace GA|GA
215 SL25 Wild sorghum GA|GA
216 SL105 Wild sorghum GA|GA
217 SL108 Wild sorghum GA|GA
218 SL109 Wild sorghum GAA|GAA
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum GA|GA
221 SL130 Wild sorghum N|N
222 SL135 Wild sorghum GA|GA
223 SL136 Wild sorghum GAA|GAA
224 SL137 Wild sorghum GA|GA
225 SL138 Wild sorghum G|G
226 SL140 Wild sorghum GA|GA
227 SL141 Wild sorghum G|G
228 SL19 Wild sorghum GAA|GAA
229 SL28 Wild sorghum GAA|GAA
230 SL32 Wild sorghum G|G
231 SL35 Wild sorghum GA|GA
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum GA|GA
234 SL39 Wild sorghum GA|GA
235 SL41 Wild sorghum GAA|GAA
236 SL43 Wild sorghum GA|GA
237 SL47 Wild sorghum GA|GA
238 SL49 Wild sorghum G|G
239 SL51 Wild sorghum GAA|GAA
240 SL53 Wild sorghum N|N
241 SL62 Wild sorghum GAA|GAA
242 SL83 Wild sorghum GA|GA
243 SL97 Landrace GAA|GAA
244 s48 Improved GA|GA
245 Tu13 Wild sorghum GA|GA
246 Tu14 Wild sorghum GA|GA
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum GA|GA
249 WSC5 Landrace GA|GA
250 WSC15 Landrace GA|GA
251 WSC19 Landrace GA|GA
252 WSC30 Landrace N|N
253 WSC52 Landrace GA|GA
254 WSC6 Landrace GA|GA
255 WSC61 Landrace GA|GA
256 WSC71 Improved GA|GA
257 WSC72 Landrace GA|GA
258 WSC79 Landrace GA|GA
259 WSC94 Landrace GA|GAA
260 WSC99 Landrace GA|GA
261 WSC100 Landrace GA|GA
262 WSC104 Landrace GA|GA
263 WSC105 Landrace GA|GA
264 WSC12 Landrace GA|GA
265 WSC13 Landrace GA|GA
266 WSC16 Landrace N|N
267 WSC17 Landrace GA|GA
268 WSC18 Landrace GA|GA
269 WSC20 Landrace GA|GA
270 WSC24 Landrace GA|GA
271 WSC25 Landrace N|N
272 WSC29 Landrace N|N
273 WSC31 Landrace GA|GA
274 WSC32 Landrace GA|GA
275 WSC34 Landrace GA|GA
276 WSC38 Landrace GA|GA
277 WSC39 Improved GA|GA
278 WSC40 Landrace GA|GA
279 WSC54 Landrace GA|GA
280 WSC56 Landrace GA|GA
281 WSC59 Landrace GA|GA
282 WSC68 Landrace GA|GA
283 WSC70 Landrace GA|GA
284 WSC73 Landrace GA|GA
285 WSC81 Landrace GA|GA
286 WSC85 Improved GA|GA
287 WSC91 Landrace GA|GA
288 WSC93 Landrace GA|GA
289 WSC98 Landrace GA|GA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825466 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825466 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825466 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p

Genome Browser