Variation ID : sbi33825496

Variation Detail



Variation ID sbi33825496
Type INDEL
Position Chr01 23783-23785
Ref /Alleles TAG/ T
MAF T: 0.006
5' Flank GAGCAAGAAGAGAGCGTTGCCGCTGCCCGC
3' Flank GTGGAAGCGCCGCCATCGGTAAAGTCGAGG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved TAG|TAG
2 103 Improved TAG|TAG
3 107 Improved TAG|TAG
4 11 Improved TAG|TAG
5 110 Improved TAG|TAG
6 123 Landrace TAG|TAG
7 131 Improved TAG|TAG
8 132 Improved TAG|TAG
9 135 Improved TAG|TAG
10 137 Improved TAG|TAG
11 138 Improved TAG|TAG
12 14 Improved TAG|TAG
13 140 Improved TAG|TAG
14 141 Improved TAG|TAG
15 144 Improved TAG|TAG
16 150 Improved TAG|TAG
17 154 Improved TAG|TAG
18 159 Landrace TAG|TAG
19 16 Improved TAG|TAG
20 161 Landrace TAG|TAG
21 167 Improved TAG|TAG
22 168 Improved TAG|TAG
23 170 Improved TAG|TAG
24 173 Improved TAG|TAG
25 175 Improved TAG|TAG
26 176 Improved TAG|TAG
27 182 Landrace TAG|TAG
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved TAG|TAG
31 194 Improved TAG|TAG
32 195 Improved TAG|TAG
33 197 Improved TAG|TAG
34 J22 Landrace TAG|TAG
35 J26 Landrace TAG|TAG
36 J5 Landrace TAG|TAG
37 J50 Landrace N|N
38 2001 Landrace TAG|TAG
39 2005 Improved TAG|TAG
40 2008 Improved TAG|TAG
41 2009 Landrace TAG|TAG
42 201 Improved TAG|TAG
43 2010 Landrace TAG|TAG
44 2016 Improved N|N
45 2019 Improved TAG|TAG
46 202 Improved TAG|TAG
47 2021 Improved TAG|TAG
48 2023 Improved TAG|TAG
49 2026 Improved TAG|TAG
50 2029 Improved TAG|TAG
51 2030 Landrace TAG|TAG
52 2031 Landrace TAG|TAG
53 2036 Improved TAG|TAG
54 2037 Improved TAG|TAG
55 2038 Improved N|N
56 2039 Improved TAG|TAG
57 204 Improved TAG|TAG
58 2042 Improved TAG|TAG
59 2043 Improved TAG|TAG
60 2048 Improved TAG|TAG
61 2049 Improved TAG|TAG
62 205 Improved TAG|TAG
63 2050 Improved N|N
64 2052 Improved TAG|TAG
65 2054 Improved TAG|TAG
66 2056 Improved TAG|TAG
67 2059 Improved TAG|TAG
68 206 Improved TAG|TAG
69 2064 Improved TAG|TAG
70 2065 Improved TAG|TAG
71 2067 Improved TAG|TAG
72 2068 Improved TAG|TAG
73 2069 Improved TAG|TAG
74 2071 Improved TAG|TAG
75 2074 Improved TAG|TAG
76 2075 Improved TAG|TAG
77 2076 Improved TAG|TAG
78 2080 Improved TAG|TAG
79 2081 Improved TAG|TAG
80 2082 Improved TAG|TAG
81 2086 Improved TAG|TAG
82 2088 Improved TAG|TAG
83 260 Wild sorghum TAG|TAG
84 261 Improved TAG|TAG
85 262 Improved TAG|TAG
86 263 Improved TAG|TAG
87 286 Improved TAG|TAG
88 29 Improved TAG|TAG
89 3 Improved TAG|TAG
90 302546 S.propinquum N|N
91 31 Improved TAG|TAG
92 32 Improved TAG|TAG
93 34 Improved TAG|TAG
94 346 Landrace TAG|TAG
95 348 Wild sorghum TAG|TAG
96 353 Wild sorghum TAG|TAG
97 355 Wild sorghum TAG|TAG
98 357 Wild sorghum TAG|TAG
99 364 Wild sorghum TAG|T
100 367 Landrace TAG|TAG
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace TAG|TAG
104 377 Wild sorghum N|N
105 392 Wild sorghum TAG|TAG
106 394 Wild sorghum TAG|TAG
107 40 Improved TAG|TAG
108 42 Improved TAG|TAG
109 43 Improved TAG|TAG
110 45 Improved TAG|TAG
111 47 Improved TAG|TAG
112 48 Improved TAG|TAG
113 51 Improved TAG|TAG
114 53 Improved TAG|TAG
115 56 Improved TAG|TAG
116 61 Improved TAG|TAG
117 62 Improved TAG|TAG
118 66 Landrace TAG|TAG
119 67 Improved TAG|TAG
120 68 Improved TAG|TAG
121 70 Improved TAG|TAG
122 73 Improved TAG|TAG
123 75 Improved TAG|TAG
124 88 Improved TAG|TAG
125 89 Improved TAG|TAG
126 91 Improved TAG|TAG
127 92 Improved TAG|TAG
128 93 Improved TAG|TAG
129 94 Improved TAG|TAG
130 95 Improved TAG|TAG
131 96 Improved TAG|TAG
132 97 Improved TAG|TAG
133 s1 Improved TAG|TAG
134 s36 Wild sorghum TAG|T
135 s2 Landrace TAG|TAG
136 s3 Improved TAG|TAG
137 s32 Improved TAG|TAG
138 s43 Weedy TAG|TAG
139 s40 Landrace N|N
140 s41 Weedy N|N
141 s39 Landrace TAG|TAG
142 s42 Landrace TAG|TAG
143 s47 Improved TAG|TAG
144 s5 Landrace TAG|TAG
145 GW102 Landrace TAG|TAG
146 GW103 Landrace TAG|TAG
147 GW104 Landrace TAG|TAG
148 GW105 Landrace TAG|TAG
149 GW16 Landrace TAG|TAG
150 GW2 Landrace TAG|TAG
151 GW34 Landrace TAG|TAG
152 GW37 Landrace TAG|TAG
153 GW58 Landrace TAG|TAG
154 GW59 Landrace TAG|TAG
155 GW9 Landrace TAG|TAG
156 s4 Weedy TAG|TAG
157 s6 Improved TAG|TAG
158 s7 Landrace TAG|TAG
159 s8 Landrace TAG|TAG
160 s9 Landrace TAG|TAG
161 J101 Landrace TAG|TAG
162 J103 Improved TAG|TAG
163 J112 Landrace TAG|TAG
164 J113 Improved TAG|TAG
165 J129 Improved TAG|TAG
166 J130 Improved TAG|TAG
167 J136 Improved TAG|TAG
168 J152 Improved TAG|TAG
169 J2 Landrace TAG|TAG
170 J20 Landrace TAG|TAG
171 J4 Landrace TAG|TAG
172 J42 Landrace TAG|TAG
173 J44 Landrace TAG|TAG
174 J49 Landrace TAG|TAG
175 J52 Landrace TAG|TAG
176 J53 Landrace N|N
177 J54 Landrace TAG|TAG
178 J57 Landrace TAG|TAG
179 J59 Landrace TAG|TAG
180 J64 Landrace TAG|TAG
181 J66 Landrace N|N
182 J67 Landrace TAG|TAG
183 J69 Landrace TAG|TAG
184 J87 Landrace TAG|TAG
185 J99 Landrace TAG|TAG
186 s45 Landrace TAG|TAG
187 s11 Improved N|N
188 s10 Improved TAG|TAG
189 s46 Improved TAG|TAG
190 s12 Improved TAG|TAG
191 s13 Landrace TAG|TAG
192 MHMD Landrace TAG|TAG
193 s14 Improved TAG|TAG
194 s15 Improved TAG|TAG
195 s34 Weedy TAG|TAG
196 s33 Wild sorghum TAG|TAG
197 s21 Wild sorghum TAG|TAG
198 s16 Wild sorghum TAG|TAG
199 s44 Improved TAG|TAG
200 s35 Landrace TAG|TAG
201 s31 Wild sorghum TAG|TAG
202 s17 Improved TAG|TAG
203 s18 Improved TAG|TAG
204 s20 Improved TAG|TAG
205 s19 Improved TAG|TAG
206 s22 Landrace TAG|TAG
207 s23 Landrace TAG|TAG
208 s24 Landrace TAG|TAG
209 s25 Landrace TAG|TAG
210 s26 Landrace TAG|TAG
211 s27 Landrace TAG|TAG
212 s28 Landrace TAG|TAG
213 s29 Landrace TAG|TAG
214 s30 Landrace TAG|TAG
215 SL25 Wild sorghum TAG|TAG
216 SL105 Wild sorghum TAG|TAG
217 SL108 Wild sorghum TAG|TAG
218 SL109 Wild sorghum TAG|TAG
219 SL12 Wild sorghum TAG|TAG
220 SL129 Wild sorghum TAG|TAG
221 SL130 Wild sorghum TAG|TAG
222 SL135 Wild sorghum TAG|TAG
223 SL136 Wild sorghum TAG|TAG
224 SL137 Wild sorghum TAG|TAG
225 SL138 Wild sorghum TAG|TAG
226 SL140 Wild sorghum TAG|TAG
227 SL141 Wild sorghum TAG|TAG
228 SL19 Wild sorghum TAG|TAG
229 SL28 Wild sorghum TAG|TAG
230 SL32 Wild sorghum TAG|TAG
231 SL35 Wild sorghum TAG|TAG
232 SL36 Wild sorghum TAG|TAG
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum TAG|TAG
235 SL41 Wild sorghum TAG|TAG
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum TAG|TAG
238 SL49 Wild sorghum TAG|TAG
239 SL51 Wild sorghum TAG|TAG
240 SL53 Wild sorghum N|N
241 SL62 Wild sorghum TAG|T
242 SL83 Wild sorghum TAG|TAG
243 SL97 Landrace TAG|TAG
244 s48 Improved TAG|TAG
245 Tu13 Wild sorghum TAG|TAG
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum TAG|TAG
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace TAG|TAG
250 WSC15 Landrace TAG|TAG
251 WSC19 Landrace TAG|TAG
252 WSC30 Landrace TAG|TAG
253 WSC52 Landrace TAG|TAG
254 WSC6 Landrace TAG|TAG
255 WSC61 Landrace TAG|TAG
256 WSC71 Improved TAG|TAG
257 WSC72 Landrace TAG|TAG
258 WSC79 Landrace TAG|TAG
259 WSC94 Landrace TAG|TAG
260 WSC99 Landrace TAG|TAG
261 WSC100 Landrace TAG|TAG
262 WSC104 Landrace TAG|TAG
263 WSC105 Landrace TAG|TAG
264 WSC12 Landrace TAG|TAG
265 WSC13 Landrace TAG|TAG
266 WSC16 Landrace TAG|TAG
267 WSC17 Landrace TAG|TAG
268 WSC18 Landrace TAG|TAG
269 WSC20 Landrace TAG|TAG
270 WSC24 Landrace TAG|TAG
271 WSC25 Landrace N|N
272 WSC29 Landrace TAG|TAG
273 WSC31 Landrace TAG|TAG
274 WSC32 Landrace TAG|TAG
275 WSC34 Landrace TAG|TAG
276 WSC38 Landrace N|N
277 WSC39 Improved TAG|TAG
278 WSC40 Landrace TAG|TAG
279 WSC54 Landrace TAG|TAG
280 WSC56 Landrace TAG|TAG
281 WSC59 Landrace TAG|TAG
282 WSC68 Landrace TAG|TAG
283 WSC70 Landrace TAG|TAG
284 WSC73 Landrace TAG|TAG
285 WSC81 Landrace TAG|TAG
286 WSC85 Improved TAG|TAG
287 WSC91 Landrace TAG|TAG
288 WSC93 Landrace TAG|TAG
289 WSC98 Landrace TAG|TAG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825496 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825496 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825496 Sobic.001G000300 frameshift variant |HIGH Sobic.001G000300.2 mRNA 226 CTa/a Sobic.001G000300.2.p 76 L/X
sbi33825496 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825496 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825496 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825496 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser