sorgsd

Variation ID : sbi33825523

Variation Detail

Variation ID	sbi33825523
Type	INDEL
Position	Chr01 26866-26870
Ref /Alleles	GAGCC/ G
MAF	G: 0.028
5' Flank	GATAAGAATAGAATGACACTGTGCTGGGAT
3' Flank	AGCCAGAACCTTCTCCAATTTCCTCAATAT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GAGCC\|GAGCC
2	103	Improved	GAGCC\|GAGCC
3	107	Improved	GAGCC\|GAGCC
4	11	Improved	N\|N
5	110	Improved	GAGCC\|GAGCC
6	123	Landrace	N\|N
7	131	Improved	GAGCC\|GAGCC
8	132	Improved	G\|G
9	135	Improved	GAGCC\|GAGCC
10	137	Improved	GAGCC\|GAGCC
11	138	Improved	GAGCC\|GAGCC
12	14	Improved	GAGCC\|GAGCC
13	140	Improved	GAGCC\|GAGCC
14	141	Improved	GAGCC\|GAGCC
15	144	Improved	GAGCC\|GAGCC
16	150	Improved	GAGCC\|GAGCC
17	154	Improved	N\|N
18	159	Landrace	GAGCC\|GAGCC
19	16	Improved	GAGCC\|GAGCC
20	161	Landrace	GAGCC\|GAGCC
21	167	Improved	GAGCC\|GAGCC
22	168	Improved	GAGCC\|GAGCC
23	170	Improved	N\|N
24	173	Improved	N\|N
25	175	Improved	GAGCC\|GAGCC
26	176	Improved	GAGCC\|GAGCC
27	182	Landrace	GAGCC\|GAGCC
28	186	Improved	GAGCC\|GAGCC
29	190	Improved	GAGCC\|GAGCC
30	192	Improved	GAGCC\|GAGCC
31	194	Improved	N\|N
32	195	Improved	GAGCC\|GAGCC
33	197	Improved	GAGCC\|GAGCC
34	J22	Landrace	GAGCC\|GAGCC
35	J26	Landrace	GAGCC\|GAGCC
36	J5	Landrace	GAGCC\|GAGCC
37	J50	Landrace	GAGCC\|GAGCC
38	2001	Landrace	GAGCC\|GAGCC
39	2005	Improved	GAGCC\|GAGCC
40	2008	Improved	GAGCC\|GAGCC
41	2009	Landrace	N\|N
42	201	Improved	GAGCC\|GAGCC
43	2010	Landrace	GAGCC\|GAGCC
44	2016	Improved	N\|N
45	2019	Improved	GAGCC\|GAGCC
46	202	Improved	GAGCC\|GAGCC
47	2021	Improved	GAGCC\|GAGCC
48	2023	Improved	N\|N
49	2026	Improved	GAGCC\|GAGCC
50	2029	Improved	GAGCC\|GAGCC
51	2030	Landrace	GAGCC\|GAGCC
52	2031	Landrace	GAGCC\|GAGCC
53	2036	Improved	GAGCC\|GAGCC
54	2037	Improved	GAGCC\|GAGCC
55	2038	Improved	GAGCC\|GAGCC
56	2039	Improved	GAGCC\|GAGCC
57	204	Improved	GAGCC\|GAGCC
58	2042	Improved	GAGCC\|GAGCC
59	2043	Improved	N\|N
60	2048	Improved	N\|N
61	2049	Improved	GAGCC\|GAGCC
62	205	Improved	GAGCC\|GAGCC
63	2050	Improved	N\|N
64	2052	Improved	GAGCC\|GAGCC
65	2054	Improved	N\|N
66	2056	Improved	GAGCC\|GAGCC
67	2059	Improved	GAGCC\|GAGCC
68	206	Improved	GAGCC\|GAGCC
69	2064	Improved	GAGCC\|GAGCC
70	2065	Improved	GAGCC\|GAGCC
71	2067	Improved	GAGCC\|GAGCC
72	2068	Improved	GAGCC\|GAGCC
73	2069	Improved	GAGCC\|GAGCC
74	2071	Improved	GAGCC\|GAGCC
75	2074	Improved	GAGCC\|GAGCC
76	2075	Improved	GAGCC\|GAGCC
77	2076	Improved	GAGCC\|GAGCC
78	2080	Improved	N\|N
79	2081	Improved	GAGCC\|GAGCC
80	2082	Improved	GAGCC\|GAGCC
81	2086	Improved	GAGCC\|GAGCC
82	2088	Improved	GAGCC\|GAGCC
83	260	Wild sorghum	GAGCC\|GAGCC
84	261	Improved	GAGCC\|GAGCC
85	262	Improved	GAGCC\|GAGCC
86	263	Improved	GAGCC\|GAGCC
87	286	Improved	GAGCC\|GAGCC
88	29	Improved	N\|N
89	3	Improved	GAGCC\|GAGCC
90	302546	S.propinquum	GAGCC\|GAGCC
91	31	Improved	GAGCC\|GAGCC
92	32	Improved	GAGCC\|GAGCC
93	34	Improved	G\|G
94	346	Landrace	GAGCC\|GAGCC
95	348	Wild sorghum	GAGCC\|GAGCC
96	353	Wild sorghum	GAGCC\|GAGCC
97	355	Wild sorghum	GAGCC\|GAGCC
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	N\|N
100	367	Landrace	GAGCC\|GAGCC
101	s37	S.propinquum	GAGCC\|GAGCC
102	s38	S.propinquum	N\|N
103	370	Landrace	N\|N
104	377	Wild sorghum	N\|N
105	392	Wild sorghum	GAGCC\|GAGCC
106	394	Wild sorghum	GAGCC\|GAGCC
107	40	Improved	GAGCC\|GAGCC
108	42	Improved	N\|N
109	43	Improved	GAGCC\|G
110	45	Improved	GAGCC\|GAGCC
111	47	Improved	GAGCC\|GAGCC
112	48	Improved	N\|N
113	51	Improved	GAGCC\|GAGCC
114	53	Improved	GAGCC\|GAGCC
115	56	Improved	GAGCC\|GAGCC
116	61	Improved	GAGCC\|GAGCC
117	62	Improved	GAGCC\|GAGCC
118	66	Landrace	GAGCC\|GAGCC
119	67	Improved	N\|N
120	68	Improved	GAGCC\|GAGCC
121	70	Improved	GAGCC\|GAGCC
122	73	Improved	GAGCC\|GAGCC
123	75	Improved	N\|N
124	88	Improved	GAGCC\|GAGCC
125	89	Improved	GAGCC\|GAGCC
126	91	Improved	GAGCC\|GAGCC
127	92	Improved	GAGCC\|GAGCC
128	93	Improved	N\|N
129	94	Improved	GAGCC\|GAGCC
130	95	Improved	N\|N
131	96	Improved	GAGCC\|GAGCC
132	97	Improved	N\|N
133	s1	Improved	GAGCC\|GAGCC
134	s36	Wild sorghum	GAGCC\|GAGCC
135	s2	Landrace	GAGCC\|GAGCC
136	s3	Improved	GAGCC\|GAGCC
137	s32	Improved	GAGCC\|GAGCC
138	s43	Weedy	GAGCC\|GAGCC
139	s40	Landrace	GAGCC\|GAGCC
140	s41	Weedy	GAGCC\|GAGCC
141	s39	Landrace	GAGCC\|GAGCC
142	s42	Landrace	GAGCC\|GAGCC
143	s47	Improved	GAGCC\|GAGCC
144	s5	Landrace	GAGCC\|GAGCC
145	GW102	Landrace	GAGCC\|GAGCC
146	GW103	Landrace	GAGCC\|GAGCC
147	GW104	Landrace	GAGCC\|GAGCC
148	GW105	Landrace	GAGCC\|GAGCC
149	GW16	Landrace	GAGCC\|GAGCC
150	GW2	Landrace	GAGCC\|GAGCC
151	GW34	Landrace	N\|N
152	GW37	Landrace	GAGCC\|GAGCC
153	GW58	Landrace	GAGCC\|GAGCC
154	GW59	Landrace	GAGCC\|GAGCC
155	GW9	Landrace	GAGCC\|GAGCC
156	s4	Weedy	GAGCC\|GAGCC
157	s6	Improved	GAGCC\|GAGCC
158	s7	Landrace	GAGCC\|GAGCC
159	s8	Landrace	GAGCC\|GAGCC
160	s9	Landrace	GAGCC\|GAGCC
161	J101	Landrace	G\|G
162	J103	Improved	GAGCC\|GAGCC
163	J112	Landrace	GAGCC\|GAGCC
164	J113	Improved	GAGCC\|GAGCC
165	J129	Improved	GAGCC\|GAGCC
166	J130	Improved	GAGCC\|GAGCC
167	J136	Improved	GAGCC\|GAGCC
168	J152	Improved	GAGCC\|GAGCC
169	J2	Landrace	N\|N
170	J20	Landrace	GAGCC\|GAGCC
171	J4	Landrace	GAGCC\|GAGCC
172	J42	Landrace	GAGCC\|GAGCC
173	J44	Landrace	GAGCC\|GAGCC
174	J49	Landrace	N\|N
175	J52	Landrace	GAGCC\|GAGCC
176	J53	Landrace	GAGCC\|GAGCC
177	J54	Landrace	GAGCC\|GAGCC
178	J57	Landrace	GAGCC\|GAGCC
179	J59	Landrace	N\|N
180	J64	Landrace	GAGCC\|GAGCC
181	J66	Landrace	N\|N
182	J67	Landrace	GAGCC\|GAGCC
183	J69	Landrace	GAGCC\|GAGCC
184	J87	Landrace	GAGCC\|GAGCC
185	J99	Landrace	GAGCC\|GAGCC
186	s45	Landrace	GAGCC\|GAGCC
187	s11	Improved	N\|N
188	s10	Improved	GAGCC\|GAGCC
189	s46	Improved	GAGCC\|GAGCC
190	s12	Improved	GAGCC\|GAGCC
191	s13	Landrace	GAGCC\|GAGCC
192	MHMD	Landrace	GAGCC\|GAGCC
193	s14	Improved	GAGCC\|GAGCC
194	s15	Improved	GAGCC\|GAGCC
195	s34	Weedy	N\|N
196	s33	Wild sorghum	GAGCC\|GAGCC
197	s21	Wild sorghum	GAGCC\|GAGCC
198	s16	Wild sorghum	GAGCC\|GAGCC
199	s44	Improved	GAGCC\|GAGCC
200	s35	Landrace	GAGCC\|GAGCC
201	s31	Wild sorghum	GAGCC\|GAGCC
202	s17	Improved	GAGCC\|GAGCC
203	s18	Improved	GAGCC\|GAGCC
204	s20	Improved	GAGCC\|GAGCC
205	s19	Improved	GAGCC\|GAGCC
206	s22	Landrace	GAGCC\|GAGCC
207	s23	Landrace	GAGCC\|GAGCC
208	s24	Landrace	N\|N
209	s25	Landrace	GAGCC\|GAGCC
210	s26	Landrace	GAGCC\|GAGCC
211	s27	Landrace	GAGCC\|GAGCC
212	s28	Landrace	GAGCC\|GAGCC
213	s29	Landrace	GAGCC\|GAGCC
214	s30	Landrace	GAGCC\|GAGCC
215	SL25	Wild sorghum	N\|N
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	GAGCC\|GAGCC
218	SL109	Wild sorghum	N\|N
219	SL12	Wild sorghum	GAGCC\|GAGCC
220	SL129	Wild sorghum	GAGCC\|GAGCC
221	SL130	Wild sorghum	GAGCC\|GAGCC
222	SL135	Wild sorghum	GAGCC\|GAGCC
223	SL136	Wild sorghum	N\|N
224	SL137	Wild sorghum	GAGCC\|GAGCC
225	SL138	Wild sorghum	GAGCC\|GAGCC
226	SL140	Wild sorghum	N\|N
227	SL141	Wild sorghum	N\|N
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	GAGCC\|GAGCC
231	SL35	Wild sorghum	GAGCC\|GAGCC
232	SL36	Wild sorghum	GAGCC\|GAGCC
233	SL37	Wild sorghum	GAGCC\|GAGCC
234	SL39	Wild sorghum	GAGCC\|GAGCC
235	SL41	Wild sorghum	N\|N
236	SL43	Wild sorghum	GAGCC\|GAGCC
237	SL47	Wild sorghum	GAGCC\|GAGCC
238	SL49	Wild sorghum	GAGCC\|GAGCC
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	GAGCC\|GAGCC
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	GAGCC\|GAGCC
244	s48	Improved	GAGCC\|GAGCC
245	Tu13	Wild sorghum	GAGCC\|GAGCC
246	Tu14	Wild sorghum	N\|N
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	N\|N
249	WSC5	Landrace	N\|N
250	WSC15	Landrace	GAGCC\|GAGCC
251	WSC19	Landrace	GAGCC\|GAGCC
252	WSC30	Landrace	GAGCC\|GAGCC
253	WSC52	Landrace	GAGCC\|GAGCC
254	WSC6	Landrace	GAGCC\|GAGCC
255	WSC61	Landrace	N\|N
256	WSC71	Improved	GAGCC\|GAGCC
257	WSC72	Landrace	GAGCC\|GAGCC
258	WSC79	Landrace	GAGCC\|GAGCC
259	WSC94	Landrace	GAGCC\|GAGCC
260	WSC99	Landrace	GAGCC\|GAGCC
261	WSC100	Landrace	G\|G
262	WSC104	Landrace	G\|G
263	WSC105	Landrace	GAGCC\|GAGCC
264	WSC12	Landrace	GAGCC\|GAGCC
265	WSC13	Landrace	GAGCC\|GAGCC
266	WSC16	Landrace	GAGCC\|GAGCC
267	WSC17	Landrace	GAGCC\|GAGCC
268	WSC18	Landrace	GAGCC\|GAGCC
269	WSC20	Landrace	GAGCC\|GAGCC
270	WSC24	Landrace	N\|N
271	WSC25	Landrace	GAGCC\|GAGCC
272	WSC29	Landrace	GAGCC\|GAGCC
273	WSC31	Landrace	GAGCC\|GAGCC
274	WSC32	Landrace	GAGCC\|GAGCC
275	WSC34	Landrace	GAGCC\|GAGCC
276	WSC38	Landrace	GAGCC\|GAGCC
277	WSC39	Improved	GAGCC\|GAGCC
278	WSC40	Landrace	GAGCC\|GAGCC
279	WSC54	Landrace	G\|G
280	WSC56	Landrace	GAGCC\|GAGCC
281	WSC59	Landrace	GAGCC\|GAGCC
282	WSC68	Landrace	GAGCC\|GAGCC
283	WSC70	Landrace	GAGCC\|GAGCC
284	WSC73	Landrace	GAGCC\|GAGCC
285	WSC81	Landrace	GAGCC\|GAGCC
286	WSC85	Improved	GAGCC\|GAGCC
287	WSC91	Landrace	GAGCC\|GAGCC
288	WSC93	Landrace	GAGCC\|GAGCC
289	WSC98	Landrace	GAGCC\|GAGCC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825523	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825523	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825523	Sobic.001G000300	upstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825523	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825523	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825523	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825523	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser