Variation ID : sbi33825525

Variation Detail



Variation ID sbi33825525
Type INDEL
Position Chr01 26930-26933
Ref /Alleles CCGG/ C or CCGGCGGCGGCGG
MAF CCGGCGGCGGCGG: 0.160
5' Flank TGGTATCCAGAGCCTTGGTTAGGGTTACCT
3' Flank CGGCGGCGGCGGCGGCGACGCGTCCTGGTG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved CCGG|CCGG
2 103 Improved N|N
3 107 Improved CCGG|CCGG
4 11 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
5 110 Improved CCGG|CCGG
6 123 Landrace N|N
7 131 Improved CCGG|CCGG
8 132 Improved CCGG|CCGG
9 135 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
10 137 Improved CCGG|CCGG
11 138 Improved CCGG|CCGG
12 14 Improved CCGG|CCGG
13 140 Improved CCGG|CCGG
14 141 Improved N|N
15 144 Improved CCGG|CCGG
16 150 Improved CCGG|CCGG
17 154 Improved CCGG|CCGG
18 159 Landrace CCGG|CCGG
19 16 Improved CCGG|CCGG
20 161 Landrace CCGG|CCGG
21 167 Improved CCGG|CCGG
22 168 Improved CCGG|CCGG
23 170 Improved CCGG|CCGG
24 173 Improved CCGG|CCGG
25 175 Improved N|N
26 176 Improved CCGG|CCGG
27 182 Landrace N|N
28 186 Improved CCGG|CCGG
29 190 Improved N|N
30 192 Improved CCGG|CCGG
31 194 Improved N|N
32 195 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
33 197 Improved N|N
34 J22 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
35 J26 Landrace CCGG|CCGG
36 J5 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
37 J50 Landrace CCGG|CCGG
38 2001 Landrace N|N
39 2005 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
40 2008 Improved CCGG|CCGG
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace CCGG|CCGG
44 2016 Improved N|N
45 2019 Improved CCGG|CCGG
46 202 Improved CCGG|CCGG
47 2021 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
48 2023 Improved N|N
49 2026 Improved CCGG|CCGG
50 2029 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
51 2030 Landrace CCGG|CCGG
52 2031 Landrace CCGG|CCGG
53 2036 Improved CCGG|CCGG
54 2037 Improved CCGG|CCGG
55 2038 Improved N|N
56 2039 Improved CCGG|CCGG
57 204 Improved CCGG|CCGG
58 2042 Improved CCGG|CCGG
59 2043 Improved N|N
60 2048 Improved CCGG|CCGG
61 2049 Improved CCGG|CCGG
62 205 Improved CCGG|CCGG
63 2050 Improved N|N
64 2052 Improved CCGG|CCGG
65 2054 Improved N|N
66 2056 Improved CCGG|CCGG
67 2059 Improved CCGG|CCGG
68 206 Improved CCGG|CCGG
69 2064 Improved N|N
70 2065 Improved CCGG|CCGG
71 2067 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
72 2068 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
73 2069 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
74 2071 Improved CCGG|CCGG
75 2074 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
76 2075 Improved CCGG|CCGG
77 2076 Improved CCGG|CCGG
78 2080 Improved N|N
79 2081 Improved CCGG|CCGG
80 2082 Improved N|N
81 2086 Improved N|N
82 2088 Improved CCGG|CCGG
83 260 Wild sorghum CCGG|CCGG
84 261 Improved CCGG|CCGG
85 262 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
86 263 Improved CCGG|CCGG
87 286 Improved CCGG|CCGG
88 29 Improved CCGG|CCGG
89 3 Improved CCGG|CCGG
90 302546 S.propinquum N|N
91 31 Improved CCGG|CCGG
92 32 Improved CCGG|CCGG
93 34 Improved CCGG|CCGG
94 346 Landrace CCGG|CCGG
95 348 Wild sorghum N|N
96 353 Wild sorghum CCGG|CCGG
97 355 Wild sorghum CCGG|CCGG
98 357 Wild sorghum N|N
99 364 Wild sorghum N|N
100 367 Landrace CCGG|CCGG
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved CCGG|CCGG
108 42 Improved N|N
109 43 Improved CCGG|CCGG
110 45 Improved CCGG|CCGG
111 47 Improved CCGG|CCGG
112 48 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
113 51 Improved CCGG|CCGG
114 53 Improved CCGG|CCGG
115 56 Improved CCGG|CCGG
116 61 Improved CCGG|CCGG
117 62 Improved CCGG|CCGG
118 66 Landrace CCGG|CCGG
119 67 Improved N|N
120 68 Improved CCGG|CCGG
121 70 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
122 73 Improved CCGG|CCGG
123 75 Improved N|N
124 88 Improved CCGG|CCGG
125 89 Improved CCGG|CCGG
126 91 Improved CCGG|CCGG
127 92 Improved CCGG|CCGG
128 93 Improved CCGG|CCGG
129 94 Improved N|N
130 95 Improved CCGG|CCGG
131 96 Improved CCGG|CCGG
132 97 Improved CCGG|CCGG
133 s1 Improved CCGG|CCGG
134 s36 Wild sorghum CCGG|CCGG
135 s2 Landrace CCGG|CCGG
136 s3 Improved CCGG|CCGG
137 s32 Improved CCGG|CCGG
138 s43 Weedy CCGG|CCGG
139 s40 Landrace N|N
140 s41 Weedy CCGG|CCGG
141 s39 Landrace CCGG|CCGG
142 s42 Landrace CCGG|CCGG
143 s47 Improved CCGG|CCGG
144 s5 Landrace N|N
145 GW102 Landrace CCGG|CCGG
146 GW103 Landrace CCGG|CCGG
147 GW104 Landrace CCGG|CCGG
148 GW105 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
149 GW16 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
150 GW2 Landrace CCGG|CCGG
151 GW34 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
152 GW37 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
153 GW58 Landrace N|N
154 GW59 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
155 GW9 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
156 s4 Weedy CCGG|CCGG
157 s6 Improved CCGG|CCGG
158 s7 Landrace CCGG|CCGG
159 s8 Landrace CCGG|CCGG
160 s9 Landrace CCGG|CCGG
161 J101 Landrace CCGG|CCGG
162 J103 Improved CCGG|CCGG
163 J112 Landrace CCGG|CCGG
164 J113 Improved CCGG|CCGG
165 J129 Improved CCGG|CCGG
166 J130 Improved CCGG|CCGG
167 J136 Improved CCGG|CCGG
168 J152 Improved N|N
169 J2 Landrace N|N
170 J20 Landrace N|N
171 J4 Landrace CCGG|CCGG
172 J42 Landrace CCGG|CCGG
173 J44 Landrace CCGG|CCGG
174 J49 Landrace N|N
175 J52 Landrace CCGG|CCGG
176 J53 Landrace CCGG|CCGG
177 J54 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
178 J57 Landrace CCGG|CCGG
179 J59 Landrace CCGG|CCGG
180 J64 Landrace N|N
181 J66 Landrace N|N
182 J67 Landrace CCGG|CCGG
183 J69 Landrace CCGG|CCGG
184 J87 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
185 J99 Landrace CCGG|CCGG
186 s45 Landrace CCGG|CCGG
187 s11 Improved N|N
188 s10 Improved CCGG|CCGG
189 s46 Improved N|N
190 s12 Improved CCGG|CCGG
191 s13 Landrace CCGG|CCGG
192 MHMD Landrace CCGG|CCGG
193 s14 Improved CCGG|CCGG
194 s15 Improved CCGG|CCGG
195 s34 Weedy N|N
196 s33 Wild sorghum C|C
197 s21 Wild sorghum CCGG|CCGG
198 s16 Wild sorghum CCGG|CCGG
199 s44 Improved CCGG|CCGG
200 s35 Landrace CCGG|CCGG
201 s31 Wild sorghum CCGG|CCGG
202 s17 Improved CCGG|CCGG
203 s18 Improved CCGG|CCGG
204 s20 Improved CCGG|CCGG
205 s19 Improved CCGG|CCGG
206 s22 Landrace CCGG|CCGG
207 s23 Landrace N|N
208 s24 Landrace N|N
209 s25 Landrace CCGG|CCGG
210 s26 Landrace CCGG|CCGG
211 s27 Landrace N|N
212 s28 Landrace CCGG|CCGG
213 s29 Landrace CCGG|CCGG
214 s30 Landrace CCGG|CCGG
215 SL25 Wild sorghum N|N
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum CCGG|CCGG
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum CCGG|CCGG
222 SL135 Wild sorghum CCGG|CCGG
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum CCGG|CCGG
225 SL138 Wild sorghum CCGGCGGCGGCGG|CCGGCGGCGGCGG
226 SL140 Wild sorghum CCGGCGGCGGCGG|CCGGCGGCGGCGG
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum CCGGCGGCGGCGG|CCGGCGGCGGCGG
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum CCGG|CCGG
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum CCGG|CCGG
238 SL49 Wild sorghum CCGGCGGCGGCGG|CCGGCGGCGGCGG
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum N|N
241 SL62 Wild sorghum C|C
242 SL83 Wild sorghum CCGG|CCGG
243 SL97 Landrace N|N
244 s48 Improved CCGG|CCGG
245 Tu13 Wild sorghum CCGG|CCGG
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace N|N
250 WSC15 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
251 WSC19 Landrace CCGG|CCGG
252 WSC30 Landrace CCGG|CCGG
253 WSC52 Landrace CCGG|CCGG
254 WSC6 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
255 WSC61 Landrace N|N
256 WSC71 Improved CCGG|CCGG
257 WSC72 Landrace CCGG|CCGG
258 WSC79 Landrace N|N
259 WSC94 Landrace CCGG|CCGG
260 WSC99 Landrace N|N
261 WSC100 Landrace CCGG|CCGG
262 WSC104 Landrace CCGG|CCGG
263 WSC105 Landrace CCGG|CCGG
264 WSC12 Landrace CCGG|CCGG
265 WSC13 Landrace CCGG|CCGG
266 WSC16 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
267 WSC17 Landrace CCGG|CCGG
268 WSC18 Landrace CCGG|CCGG
269 WSC20 Landrace CCGG|CCGG
270 WSC24 Landrace N|N
271 WSC25 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
272 WSC29 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
273 WSC31 Landrace CCGG|CCGG
274 WSC32 Landrace N|N
275 WSC34 Landrace CCGG|CCGG
276 WSC38 Landrace CCGG|CCGG
277 WSC39 Improved CCGGCGGCGGCGG|CCGGCGGCGGCGG
278 WSC40 Landrace CCGG|CCGG
279 WSC54 Landrace CCGG|CCGG
280 WSC56 Landrace CCGG|CCGG
281 WSC59 Landrace CCGGCGGCGGCGG|CCGGCGGCGGCGG
282 WSC68 Landrace CCGG|CCGG
283 WSC70 Landrace CCGG|CCGG
284 WSC73 Landrace CCGG|CCGG
285 WSC81 Landrace N|N
286 WSC85 Improved CCGG|CCGG
287 WSC91 Landrace CCGG|CCGG
288 WSC93 Landrace CCGG|CCGG
289 WSC98 Landrace CCGG|CCGG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825525 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825525 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825525 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser