sorgsd

Variation ID : sbi33825543

Variation Detail

Variation ID	sbi33825543
Type	INDEL
Position	Chr01 29282-29285
Ref /Alleles	AGAG/ A
MAF	A: 0.004
5' Flank	CAGCATTGGCGGTAGCTGTTGGAGCACAGG
3' Flank	GGATATCTACTTGCTTCATTGTCGGTTAGG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	AGAG\|AGAG
2	103	Improved	AGAG\|AGAG
3	107	Improved	AGAG\|AGAG
4	11	Improved	AGAG\|AGAG
5	110	Improved	AGAG\|AGAG
6	123	Landrace	AGAG\|AGAG
7	131	Improved	AGAG\|AGAG
8	132	Improved	AGAG\|AGAG
9	135	Improved	AGAG\|AGAG
10	137	Improved	AGAG\|AGAG
11	138	Improved	AGAG\|AGAG
12	14	Improved	AGAG\|AGAG
13	140	Improved	AGAG\|AGAG
14	141	Improved	AGAG\|AGAG
15	144	Improved	AGAG\|AGAG
16	150	Improved	AGAG\|AGAG
17	154	Improved	AGAG\|AGAG
18	159	Landrace	AGAG\|AGAG
19	16	Improved	AGAG\|AGAG
20	161	Landrace	AGAG\|AGAG
21	167	Improved	AGAG\|AGAG
22	168	Improved	AGAG\|AGAG
23	170	Improved	AGAG\|AGAG
24	173	Improved	AGAG\|AGAG
25	175	Improved	N\|N
26	176	Improved	AGAG\|AGAG
27	182	Landrace	AGAG\|AGAG
28	186	Improved	AGAG\|AGAG
29	190	Improved	AGAG\|AGAG
30	192	Improved	AGAG\|AGAG
31	194	Improved	AGAG\|AGAG
32	195	Improved	AGAG\|AGAG
33	197	Improved	AGAG\|AGAG
34	J22	Landrace	N\|N
35	J26	Landrace	AGAG\|AGAG
36	J5	Landrace	AGAG\|AGAG
37	J50	Landrace	AGAG\|AGAG
38	2001	Landrace	AGAG\|AGAG
39	2005	Improved	AGAG\|AGAG
40	2008	Improved	AGAG\|AGAG
41	2009	Landrace	AGAG\|AGAG
42	201	Improved	AGAG\|AGAG
43	2010	Landrace	AGAG\|AGAG
44	2016	Improved	N\|N
45	2019	Improved	AGAG\|AGAG
46	202	Improved	AGAG\|AGAG
47	2021	Improved	AGAG\|AGAG
48	2023	Improved	AGAG\|AGAG
49	2026	Improved	AGAG\|AGAG
50	2029	Improved	AGAG\|AGAG
51	2030	Landrace	N\|N
52	2031	Landrace	AGAG\|AGAG
53	2036	Improved	AGAG\|AGAG
54	2037	Improved	AGAG\|AGAG
55	2038	Improved	AGAG\|AGAG
56	2039	Improved	AGAG\|AGAG
57	204	Improved	AGAG\|AGAG
58	2042	Improved	AGAG\|AGAG
59	2043	Improved	AGAG\|AGAG
60	2048	Improved	AGAG\|AGAG
61	2049	Improved	AGAG\|AGAG
62	205	Improved	AGAG\|AGAG
63	2050	Improved	AGAG\|AGAG
64	2052	Improved	AGAG\|AGAG
65	2054	Improved	AGAG\|AGAG
66	2056	Improved	AGAG\|AGAG
67	2059	Improved	AGAG\|AGAG
68	206	Improved	AGAG\|AGAG
69	2064	Improved	AGAG\|AGAG
70	2065	Improved	AGAG\|AGAG
71	2067	Improved	AGAG\|AGAG
72	2068	Improved	AGAG\|AGAG
73	2069	Improved	AGAG\|AGAG
74	2071	Improved	AGAG\|AGAG
75	2074	Improved	AGAG\|AGAG
76	2075	Improved	AGAG\|AGAG
77	2076	Improved	AGAG\|AGAG
78	2080	Improved	AGAG\|AGAG
79	2081	Improved	AGAG\|AGAG
80	2082	Improved	AGAG\|AGAG
81	2086	Improved	N\|N
82	2088	Improved	AGAG\|AGAG
83	260	Wild sorghum	AGAG\|AGAG
84	261	Improved	AGAG\|AGAG
85	262	Improved	AGAG\|AGAG
86	263	Improved	AGAG\|AGAG
87	286	Improved	AGAG\|AGAG
88	29	Improved	AGAG\|AGAG
89	3	Improved	AGAG\|AGAG
90	302546	S.propinquum	AGAG\|AGAG
91	31	Improved	AGAG\|AGAG
92	32	Improved	AGAG\|AGAG
93	34	Improved	AGAG\|AGAG
94	346	Landrace	AGAG\|AGAG
95	348	Wild sorghum	AGAG\|AGAG
96	353	Wild sorghum	AGAG\|AGAG
97	355	Wild sorghum	AGAG\|AGAG
98	357	Wild sorghum	AGAG\|AGAG
99	364	Wild sorghum	AGAG\|AGAG
100	367	Landrace	AGAG\|AGAG
101	s37	S.propinquum	AGAG\|AGAG
102	s38	S.propinquum	AGAG\|AGAG
103	370	Landrace	AGAG\|AGAG
104	377	Wild sorghum	AGAG\|AGAG
105	392	Wild sorghum	AGAG\|AGAG
106	394	Wild sorghum	AGAG\|AGAG
107	40	Improved	AGAG\|AGAG
108	42	Improved	N\|N
109	43	Improved	AGAG\|AGAG
110	45	Improved	AGAG\|AGAG
111	47	Improved	AGAG\|AGAG
112	48	Improved	AGAG\|AGAG
113	51	Improved	N\|N
114	53	Improved	N\|N
115	56	Improved	AGAG\|AGAG
116	61	Improved	AGAG\|AGAG
117	62	Improved	AGAG\|AGAG
118	66	Landrace	N\|N
119	67	Improved	AGAG\|AGAG
120	68	Improved	AGAG\|AGAG
121	70	Improved	AGAG\|AGAG
122	73	Improved	AGAG\|AGAG
123	75	Improved	N\|N
124	88	Improved	AGAG\|AGAG
125	89	Improved	AGAG\|AGAG
126	91	Improved	AGAG\|AGAG
127	92	Improved	AGAG\|AGAG
128	93	Improved	AGAG\|AGAG
129	94	Improved	AGAG\|AGAG
130	95	Improved	AGAG\|AGAG
131	96	Improved	AGAG\|AGAG
132	97	Improved	AGAG\|AGAG
133	s1	Improved	AGAG\|AGAG
134	s36	Wild sorghum	AGAG\|AGAG
135	s2	Landrace	AGAG\|AGAG
136	s3	Improved	AGAG\|AGAG
137	s32	Improved	AGAG\|AGAG
138	s43	Weedy	AGAG\|AGAG
139	s40	Landrace	AGAG\|AGAG
140	s41	Weedy	AGAG\|AGAG
141	s39	Landrace	AGAG\|AGAG
142	s42	Landrace	AGAG\|AGAG
143	s47	Improved	N\|N
144	s5	Landrace	AGAG\|AGAG
145	GW102	Landrace	AGAG\|AGAG
146	GW103	Landrace	AGAG\|AGAG
147	GW104	Landrace	AGAG\|AGAG
148	GW105	Landrace	AGAG\|AGAG
149	GW16	Landrace	AGAG\|AGAG
150	GW2	Landrace	AGAG\|AGAG
151	GW34	Landrace	AGAG\|AGAG
152	GW37	Landrace	AGAG\|AGAG
153	GW58	Landrace	AGAG\|AGAG
154	GW59	Landrace	AGAG\|AGAG
155	GW9	Landrace	AGAG\|AGAG
156	s4	Weedy	AGAG\|AGAG
157	s6	Improved	AGAG\|AGAG
158	s7	Landrace	AGAG\|AGAG
159	s8	Landrace	AGAG\|AGAG
160	s9	Landrace	AGAG\|AGAG
161	J101	Landrace	AGAG\|AGAG
162	J103	Improved	AGAG\|AGAG
163	J112	Landrace	AGAG\|AGAG
164	J113	Improved	AGAG\|AGAG
165	J129	Improved	AGAG\|AGAG
166	J130	Improved	AGAG\|AGAG
167	J136	Improved	AGAG\|AGAG
168	J152	Improved	AGAG\|AGAG
169	J2	Landrace	AGAG\|AGAG
170	J20	Landrace	AGAG\|AGAG
171	J4	Landrace	AGAG\|AGAG
172	J42	Landrace	AGAG\|AGAG
173	J44	Landrace	AGAG\|AGAG
174	J49	Landrace	AGAG\|AGAG
175	J52	Landrace	AGAG\|AGAG
176	J53	Landrace	AGAG\|AGAG
177	J54	Landrace	AGAG\|AGAG
178	J57	Landrace	AGAG\|AGAG
179	J59	Landrace	AGAG\|AGAG
180	J64	Landrace	AGAG\|AGAG
181	J66	Landrace	AGAG\|AGAG
182	J67	Landrace	AGAG\|AGAG
183	J69	Landrace	AGAG\|AGAG
184	J87	Landrace	AGAG\|AGAG
185	J99	Landrace	AGAG\|AGAG
186	s45	Landrace	AGAG\|AGAG
187	s11	Improved	AGAG\|AGAG
188	s10	Improved	AGAG\|AGAG
189	s46	Improved	AGAG\|AGAG
190	s12	Improved	AGAG\|AGAG
191	s13	Landrace	AGAG\|AGAG
192	MHMD	Landrace	AGAG\|AGAG
193	s14	Improved	AGAG\|AGAG
194	s15	Improved	AGAG\|AGAG
195	s34	Weedy	AGAG\|AGAG
196	s33	Wild sorghum	AGAG\|AGAG
197	s21	Wild sorghum	AGAG\|AGAG
198	s16	Wild sorghum	AGAG\|AGAG
199	s44	Improved	AGAG\|AGAG
200	s35	Landrace	AGAG\|AGAG
201	s31	Wild sorghum	AGAG\|AGAG
202	s17	Improved	AGAG\|AGAG
203	s18	Improved	AGAG\|AGAG
204	s20	Improved	AGAG\|AGAG
205	s19	Improved	AGAG\|AGAG
206	s22	Landrace	AGAG\|AGAG
207	s23	Landrace	AGAG\|AGAG
208	s24	Landrace	AGAG\|AGAG
209	s25	Landrace	AGAG\|AGAG
210	s26	Landrace	AGAG\|AGAG
211	s27	Landrace	AGAG\|AGAG
212	s28	Landrace	AGAG\|AGAG
213	s29	Landrace	AGAG\|AGAG
214	s30	Landrace	AGAG\|AGAG
215	SL25	Wild sorghum	AGAG\|AGAG
216	SL105	Wild sorghum	AGAG\|AGAG
217	SL108	Wild sorghum	AGAG\|AGAG
218	SL109	Wild sorghum	AGAG\|AGAG
219	SL12	Wild sorghum	AGAG\|AGAG
220	SL129	Wild sorghum	AGAG\|AGAG
221	SL130	Wild sorghum	AGAG\|AGAG
222	SL135	Wild sorghum	AGAG\|AGAG
223	SL136	Wild sorghum	A\|A
224	SL137	Wild sorghum	AGAG\|AGAG
225	SL138	Wild sorghum	AGAG\|AGAG
226	SL140	Wild sorghum	AGAG\|AGAG
227	SL141	Wild sorghum	AGAG\|AGAG
228	SL19	Wild sorghum	AGAG\|AGAG
229	SL28	Wild sorghum	AGAG\|AGAG
230	SL32	Wild sorghum	AGAG\|AGAG
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	AGAG\|AGAG
233	SL37	Wild sorghum	AGAG\|AGAG
234	SL39	Wild sorghum	AGAG\|AGAG
235	SL41	Wild sorghum	AGAG\|AGAG
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	AGAG\|AGAG
238	SL49	Wild sorghum	AGAG\|AGAG
239	SL51	Wild sorghum	AGAG\|AGAG
240	SL53	Wild sorghum	AGAG\|AGAG
241	SL62	Wild sorghum	AGAG\|AGAG
242	SL83	Wild sorghum	AGAG\|AGAG
243	SL97	Landrace	AGAG\|AGAG
244	s48	Improved	AGAG\|AGAG
245	Tu13	Wild sorghum	AGAG\|AGAG
246	Tu14	Wild sorghum	AGAG\|AGAG
247	Tu30	Wild sorghum	AGAG\|AGAG
248	Tu5	Wild sorghum	AGAG\|AGAG
249	WSC5	Landrace	AGAG\|AGAG
250	WSC15	Landrace	AGAG\|AGAG
251	WSC19	Landrace	AGAG\|AGAG
252	WSC30	Landrace	AGAG\|AGAG
253	WSC52	Landrace	AGAG\|AGAG
254	WSC6	Landrace	AGAG\|AGAG
255	WSC61	Landrace	AGAG\|AGAG
256	WSC71	Improved	AGAG\|AGAG
257	WSC72	Landrace	AGAG\|AGAG
258	WSC79	Landrace	AGAG\|AGAG
259	WSC94	Landrace	AGAG\|AGAG
260	WSC99	Landrace	AGAG\|AGAG
261	WSC100	Landrace	AGAG\|AGAG
262	WSC104	Landrace	AGAG\|AGAG
263	WSC105	Landrace	AGAG\|AGAG
264	WSC12	Landrace	AGAG\|AGAG
265	WSC13	Landrace	AGAG\|AGAG
266	WSC16	Landrace	AGAG\|AGAG
267	WSC17	Landrace	N\|N
268	WSC18	Landrace	AGAG\|AGAG
269	WSC20	Landrace	AGAG\|AGAG
270	WSC24	Landrace	AGAG\|AGAG
271	WSC25	Landrace	AGAG\|AGAG
272	WSC29	Landrace	AGAG\|AGAG
273	WSC31	Landrace	AGAG\|AGAG
274	WSC32	Landrace	AGAG\|AGAG
275	WSC34	Landrace	AGAG\|AGAG
276	WSC38	Landrace	AGAG\|AGAG
277	WSC39	Improved	AGAG\|AGAG
278	WSC40	Landrace	AGAG\|AGAG
279	WSC54	Landrace	AGAG\|AGAG
280	WSC56	Landrace	AGAG\|AGAG
281	WSC59	Landrace	AGAG\|AGAG
282	WSC68	Landrace	AGAG\|AGAG
283	WSC70	Landrace	AGAG\|AGAG
284	WSC73	Landrace	AGAG\|AGAG
285	WSC81	Landrace	AGAG\|AGAG
286	WSC85	Improved	AGAG\|AGAG
287	WSC91	Landrace	AGAG\|AGAG
288	WSC93	Landrace	AGAG\|AGAG
289	WSC98	Landrace	AGAG\|AGAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825543	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825543	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825543	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825543	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825543	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825543	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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