sorgsd

Variation ID : sbi33825548

Variation Detail

Variation ID	sbi33825548
Type	INDEL
Position	Chr01 31233-31236
Ref /Alleles	CAAG/ C
MAF	C: 0.011
5' Flank	GTAAAGAATGCATTTCTTCATGGTGACCTG
3' Flank	AAGAAGTTTATATGGAGATCCCACCGGGGT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CAAG\|CAAG
2	103	Improved	CAAG\|CAAG
3	107	Improved	CAAG\|CAAG
4	11	Improved	CAAG\|CAAG
5	110	Improved	CAAG\|CAAG
6	123	Landrace	CAAG\|CAAG
7	131	Improved	CAAG\|CAAG
8	132	Improved	CAAG\|CAAG
9	135	Improved	CAAG\|CAAG
10	137	Improved	CAAG\|CAAG
11	138	Improved	CAAG\|CAAG
12	14	Improved	CAAG\|CAAG
13	140	Improved	CAAG\|CAAG
14	141	Improved	CAAG\|CAAG
15	144	Improved	CAAG\|CAAG
16	150	Improved	CAAG\|CAAG
17	154	Improved	CAAG\|CAAG
18	159	Landrace	CAAG\|CAAG
19	16	Improved	CAAG\|CAAG
20	161	Landrace	CAAG\|CAAG
21	167	Improved	CAAG\|CAAG
22	168	Improved	CAAG\|CAAG
23	170	Improved	CAAG\|CAAG
24	173	Improved	CAAG\|CAAG
25	175	Improved	CAAG\|CAAG
26	176	Improved	CAAG\|CAAG
27	182	Landrace	CAAG\|CAAG
28	186	Improved	CAAG\|CAAG
29	190	Improved	N\|N
30	192	Improved	N\|N
31	194	Improved	CAAG\|CAAG
32	195	Improved	CAAG\|CAAG
33	197	Improved	CAAG\|CAAG
34	J22	Landrace	CAAG\|CAAG
35	J26	Landrace	CAAG\|CAAG
36	J5	Landrace	CAAG\|CAAG
37	J50	Landrace	CAAG\|CAAG
38	2001	Landrace	CAAG\|CAAG
39	2005	Improved	CAAG\|CAAG
40	2008	Improved	CAAG\|CAAG
41	2009	Landrace	CAAG\|CAAG
42	201	Improved	CAAG\|CAAG
43	2010	Landrace	CAAG\|CAAG
44	2016	Improved	CAAG\|CAAG
45	2019	Improved	CAAG\|CAAG
46	202	Improved	CAAG\|CAAG
47	2021	Improved	CAAG\|CAAG
48	2023	Improved	CAAG\|CAAG
49	2026	Improved	CAAG\|CAAG
50	2029	Improved	CAAG\|CAAG
51	2030	Landrace	CAAG\|CAAG
52	2031	Landrace	CAAG\|CAAG
53	2036	Improved	CAAG\|CAAG
54	2037	Improved	N\|N
55	2038	Improved	CAAG\|CAAG
56	2039	Improved	CAAG\|CAAG
57	204	Improved	CAAG\|CAAG
58	2042	Improved	CAAG\|CAAG
59	2043	Improved	CAAG\|CAAG
60	2048	Improved	CAAG\|CAAG
61	2049	Improved	CAAG\|CAAG
62	205	Improved	CAAG\|CAAG
63	2050	Improved	CAAG\|CAAG
64	2052	Improved	CAAG\|CAAG
65	2054	Improved	CAAG\|CAAG
66	2056	Improved	CAAG\|CAAG
67	2059	Improved	CAAG\|CAAG
68	206	Improved	CAAG\|CAAG
69	2064	Improved	CAAG\|CAAG
70	2065	Improved	CAAG\|CAAG
71	2067	Improved	CAAG\|CAAG
72	2068	Improved	CAAG\|CAAG
73	2069	Improved	CAAG\|CAAG
74	2071	Improved	CAAG\|CAAG
75	2074	Improved	CAAG\|CAAG
76	2075	Improved	CAAG\|CAAG
77	2076	Improved	CAAG\|CAAG
78	2080	Improved	CAAG\|CAAG
79	2081	Improved	CAAG\|CAAG
80	2082	Improved	CAAG\|CAAG
81	2086	Improved	CAAG\|CAAG
82	2088	Improved	CAAG\|CAAG
83	260	Wild sorghum	CAAG\|CAAG
84	261	Improved	CAAG\|CAAG
85	262	Improved	CAAG\|CAAG
86	263	Improved	CAAG\|CAAG
87	286	Improved	CAAG\|CAAG
88	29	Improved	CAAG\|CAAG
89	3	Improved	CAAG\|CAAG
90	302546	S.propinquum	N\|N
91	31	Improved	CAAG\|CAAG
92	32	Improved	CAAG\|CAAG
93	34	Improved	CAAG\|CAAG
94	346	Landrace	CAAG\|CAAG
95	348	Wild sorghum	C\|C
96	353	Wild sorghum	CAAG\|CAAG
97	355	Wild sorghum	CAAG\|CAAG
98	357	Wild sorghum	C\|C
99	364	Wild sorghum	CAAG\|CAAG
100	367	Landrace	CAAG\|CAAG
101	s37	S.propinquum	CAAG\|CAAG
102	s38	S.propinquum	CAAG\|CAAG
103	370	Landrace	CAAG\|CAAG
104	377	Wild sorghum	CAAG\|CAAG
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	C\|C
107	40	Improved	CAAG\|CAAG
108	42	Improved	CAAG\|CAAG
109	43	Improved	CAAG\|CAAG
110	45	Improved	CAAG\|CAAG
111	47	Improved	CAAG\|CAAG
112	48	Improved	CAAG\|CAAG
113	51	Improved	CAAG\|CAAG
114	53	Improved	CAAG\|CAAG
115	56	Improved	CAAG\|CAAG
116	61	Improved	CAAG\|CAAG
117	62	Improved	CAAG\|CAAG
118	66	Landrace	CAAG\|CAAG
119	67	Improved	CAAG\|CAAG
120	68	Improved	CAAG\|CAAG
121	70	Improved	CAAG\|CAAG
122	73	Improved	CAAG\|CAAG
123	75	Improved	CAAG\|CAAG
124	88	Improved	CAAG\|CAAG
125	89	Improved	CAAG\|CAAG
126	91	Improved	CAAG\|CAAG
127	92	Improved	CAAG\|CAAG
128	93	Improved	CAAG\|CAAG
129	94	Improved	CAAG\|CAAG
130	95	Improved	CAAG\|CAAG
131	96	Improved	CAAG\|CAAG
132	97	Improved	CAAG\|CAAG
133	s1	Improved	CAAG\|CAAG
134	s36	Wild sorghum	CAAG\|CAAG
135	s2	Landrace	CAAG\|CAAG
136	s3	Improved	CAAG\|CAAG
137	s32	Improved	CAAG\|CAAG
138	s43	Weedy	CAAG\|CAAG
139	s40	Landrace	CAAG\|CAAG
140	s41	Weedy	CAAG\|CAAG
141	s39	Landrace	CAAG\|CAAG
142	s42	Landrace	CAAG\|CAAG
143	s47	Improved	CAAG\|CAAG
144	s5	Landrace	CAAG\|CAAG
145	GW102	Landrace	CAAG\|CAAG
146	GW103	Landrace	CAAG\|CAAG
147	GW104	Landrace	CAAG\|CAAG
148	GW105	Landrace	CAAG\|CAAG
149	GW16	Landrace	CAAG\|CAAG
150	GW2	Landrace	CAAG\|CAAG
151	GW34	Landrace	CAAG\|CAAG
152	GW37	Landrace	CAAG\|CAAG
153	GW58	Landrace	CAAG\|CAAG
154	GW59	Landrace	CAAG\|CAAG
155	GW9	Landrace	CAAG\|CAAG
156	s4	Weedy	CAAG\|CAAG
157	s6	Improved	CAAG\|CAAG
158	s7	Landrace	CAAG\|CAAG
159	s8	Landrace	CAAG\|CAAG
160	s9	Landrace	CAAG\|CAAG
161	J101	Landrace	CAAG\|CAAG
162	J103	Improved	CAAG\|CAAG
163	J112	Landrace	CAAG\|CAAG
164	J113	Improved	CAAG\|CAAG
165	J129	Improved	CAAG\|CAAG
166	J130	Improved	CAAG\|CAAG
167	J136	Improved	CAAG\|CAAG
168	J152	Improved	CAAG\|CAAG
169	J2	Landrace	CAAG\|CAAG
170	J20	Landrace	CAAG\|CAAG
171	J4	Landrace	CAAG\|CAAG
172	J42	Landrace	CAAG\|CAAG
173	J44	Landrace	CAAG\|CAAG
174	J49	Landrace	CAAG\|CAAG
175	J52	Landrace	CAAG\|CAAG
176	J53	Landrace	CAAG\|CAAG
177	J54	Landrace	CAAG\|CAAG
178	J57	Landrace	CAAG\|CAAG
179	J59	Landrace	CAAG\|CAAG
180	J64	Landrace	CAAG\|CAAG
181	J66	Landrace	CAAG\|CAAG
182	J67	Landrace	CAAG\|CAAG
183	J69	Landrace	CAAG\|CAAG
184	J87	Landrace	CAAG\|CAAG
185	J99	Landrace	CAAG\|CAAG
186	s45	Landrace	CAAG\|CAAG
187	s11	Improved	CAAG\|CAAG
188	s10	Improved	CAAG\|CAAG
189	s46	Improved	CAAG\|CAAG
190	s12	Improved	CAAG\|CAAG
191	s13	Landrace	CAAG\|CAAG
192	MHMD	Landrace	CAAG\|CAAG
193	s14	Improved	CAAG\|CAAG
194	s15	Improved	CAAG\|CAAG
195	s34	Weedy	CAAG\|CAAG
196	s33	Wild sorghum	CAAG\|CAAG
197	s21	Wild sorghum	CAAG\|CAAG
198	s16	Wild sorghum	CAAG\|CAAG
199	s44	Improved	CAAG\|CAAG
200	s35	Landrace	CAAG\|CAAG
201	s31	Wild sorghum	CAAG\|CAAG
202	s17	Improved	CAAG\|CAAG
203	s18	Improved	CAAG\|CAAG
204	s20	Improved	CAAG\|CAAG
205	s19	Improved	CAAG\|CAAG
206	s22	Landrace	CAAG\|CAAG
207	s23	Landrace	CAAG\|CAAG
208	s24	Landrace	CAAG\|CAAG
209	s25	Landrace	CAAG\|CAAG
210	s26	Landrace	CAAG\|CAAG
211	s27	Landrace	CAAG\|CAAG
212	s28	Landrace	CAAG\|CAAG
213	s29	Landrace	CAAG\|CAAG
214	s30	Landrace	CAAG\|CAAG
215	SL25	Wild sorghum	CAAG\|CAAG
216	SL105	Wild sorghum	CAAG\|CAAG
217	SL108	Wild sorghum	CAAG\|CAAG
218	SL109	Wild sorghum	CAAG\|CAAG
219	SL12	Wild sorghum	CAAG\|CAAG
220	SL129	Wild sorghum	CAAG\|CAAG
221	SL130	Wild sorghum	CAAG\|CAAG
222	SL135	Wild sorghum	CAAG\|CAAG
223	SL136	Wild sorghum	CAAG\|CAAG
224	SL137	Wild sorghum	CAAG\|CAAG
225	SL138	Wild sorghum	CAAG\|CAAG
226	SL140	Wild sorghum	CAAG\|CAAG
227	SL141	Wild sorghum	N\|N
228	SL19	Wild sorghum	CAAG\|CAAG
229	SL28	Wild sorghum	CAAG\|CAAG
230	SL32	Wild sorghum	CAAG\|CAAG
231	SL35	Wild sorghum	CAAG\|CAAG
232	SL36	Wild sorghum	CAAG\|CAAG
233	SL37	Wild sorghum	CAAG\|CAAG
234	SL39	Wild sorghum	CAAG\|CAAG
235	SL41	Wild sorghum	CAAG\|CAAG
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	CAAG\|CAAG
238	SL49	Wild sorghum	CAAG\|CAAG
239	SL51	Wild sorghum	CAAG\|CAAG
240	SL53	Wild sorghum	CAAG\|CAAG
241	SL62	Wild sorghum	CAAG\|CAAG
242	SL83	Wild sorghum	CAAG\|CAAG
243	SL97	Landrace	CAAG\|CAAG
244	s48	Improved	CAAG\|CAAG
245	Tu13	Wild sorghum	CAAG\|CAAG
246	Tu14	Wild sorghum	CAAG\|CAAG
247	Tu30	Wild sorghum	CAAG\|CAAG
248	Tu5	Wild sorghum	CAAG\|CAAG
249	WSC5	Landrace	CAAG\|CAAG
250	WSC15	Landrace	CAAG\|CAAG
251	WSC19	Landrace	CAAG\|CAAG
252	WSC30	Landrace	CAAG\|CAAG
253	WSC52	Landrace	CAAG\|CAAG
254	WSC6	Landrace	CAAG\|CAAG
255	WSC61	Landrace	CAAG\|CAAG
256	WSC71	Improved	CAAG\|CAAG
257	WSC72	Landrace	CAAG\|CAAG
258	WSC79	Landrace	CAAG\|CAAG
259	WSC94	Landrace	CAAG\|CAAG
260	WSC99	Landrace	CAAG\|CAAG
261	WSC100	Landrace	CAAG\|CAAG
262	WSC104	Landrace	CAAG\|CAAG
263	WSC105	Landrace	CAAG\|CAAG
264	WSC12	Landrace	CAAG\|CAAG
265	WSC13	Landrace	N\|N
266	WSC16	Landrace	CAAG\|CAAG
267	WSC17	Landrace	CAAG\|CAAG
268	WSC18	Landrace	CAAG\|CAAG
269	WSC20	Landrace	CAAG\|CAAG
270	WSC24	Landrace	CAAG\|CAAG
271	WSC25	Landrace	CAAG\|CAAG
272	WSC29	Landrace	CAAG\|CAAG
273	WSC31	Landrace	CAAG\|CAAG
274	WSC32	Landrace	CAAG\|CAAG
275	WSC34	Landrace	CAAG\|CAAG
276	WSC38	Landrace	CAAG\|CAAG
277	WSC39	Improved	N\|N
278	WSC40	Landrace	CAAG\|CAAG
279	WSC54	Landrace	CAAG\|CAAG
280	WSC56	Landrace	CAAG\|CAAG
281	WSC59	Landrace	CAAG\|CAAG
282	WSC68	Landrace	CAAG\|CAAG
283	WSC70	Landrace	CAAG\|CAAG
284	WSC73	Landrace	CAAG\|CAAG
285	WSC81	Landrace	CAAG\|CAAG
286	WSC85	Improved	CAAG\|CAAG
287	WSC91	Landrace	CAAG\|CAAG
288	WSC93	Landrace	CAAG\|CAAG
289	WSC98	Landrace	CAAG\|CAAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825548	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825548	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825548	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825548	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825548	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825548	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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