sorgsd

Variation ID : sbi33825553

Variation Detail

Variation ID	sbi33825553
Type	INDEL
Position	Chr01 32527-32529
Ref /Alleles	AAT/ AATATAT or AATAT or A
MAF	AATATAT: 0.057
5' Flank	CCAGCCAGAACCTTCTCCAATTTCCTCAAT
3' Flank	ATATATATATATACAAGTGCTATTCTACAC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	AAT\|AAT
3	107	Improved	AAT\|AAT
4	11	Improved	N\|N
5	110	Improved	AAT\|AAT
6	123	Landrace	AAT\|AAT
7	131	Improved	AAT\|AAT
8	132	Improved	AATATAT\|AATATAT
9	135	Improved	N\|N
10	137	Improved	AAT\|AAT
11	138	Improved	AAT\|AAT
12	14	Improved	N\|N
13	140	Improved	AAT\|AAT
14	141	Improved	N\|N
15	144	Improved	N\|N
16	150	Improved	AAT\|AAT
17	154	Improved	AATATAT\|AATATAT
18	159	Landrace	AAT\|AAT
19	16	Improved	N\|N
20	161	Landrace	N\|N
21	167	Improved	AAT\|AAT
22	168	Improved	AAT\|AAT
23	170	Improved	AAT\|AAT
24	173	Improved	AATATAT\|AATATAT
25	175	Improved	N\|N
26	176	Improved	N\|N
27	182	Landrace	AAT\|AAT
28	186	Improved	N\|N
29	190	Improved	N\|N
30	192	Improved	N\|N
31	194	Improved	N\|N
32	195	Improved	AAT\|AAT
33	197	Improved	N\|N
34	J22	Landrace	N\|N
35	J26	Landrace	AAT\|AAT
36	J5	Landrace	AAT\|AAT
37	J50	Landrace	AAT\|AAT
38	2001	Landrace	AAT\|AAT
39	2005	Improved	AAT\|AAT
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	N\|N
43	2010	Landrace	AAT\|AAT
44	2016	Improved	AAT\|AAT
45	2019	Improved	AAT\|AAT
46	202	Improved	AAT\|AAT
47	2021	Improved	N\|N
48	2023	Improved	AAT\|AAT
49	2026	Improved	AAT\|AAT
50	2029	Improved	AAT\|AAT
51	2030	Landrace	N\|N
52	2031	Landrace	N\|N
53	2036	Improved	N\|N
54	2037	Improved	N\|N
55	2038	Improved	N\|N
56	2039	Improved	AAT\|AAT
57	204	Improved	N\|N
58	2042	Improved	AAT\|AAT
59	2043	Improved	AAT\|AAT
60	2048	Improved	AAT\|AAT
61	2049	Improved	AAT\|AAT
62	205	Improved	AAT\|AAT
63	2050	Improved	N\|N
64	2052	Improved	N\|N
65	2054	Improved	AAT\|AAT
66	2056	Improved	AAT\|AAT
67	2059	Improved	AAT\|AAT
68	206	Improved	N\|N
69	2064	Improved	AAT\|AAT
70	2065	Improved	AAT\|AAT
71	2067	Improved	AAT\|AAT
72	2068	Improved	AAT\|AAT
73	2069	Improved	AAT\|AAT
74	2071	Improved	AAT\|AAT
75	2074	Improved	AAT\|AAT
76	2075	Improved	AAT\|AAT
77	2076	Improved	AAT\|AAT
78	2080	Improved	AAT\|AAT
79	2081	Improved	AAT\|AAT
80	2082	Improved	AAT\|AAT
81	2086	Improved	N\|N
82	2088	Improved	AAT\|AAT
83	260	Wild sorghum	AAT\|AAT
84	261	Improved	N\|N
85	262	Improved	N\|N
86	263	Improved	N\|N
87	286	Improved	AAT\|AAT
88	29	Improved	N\|N
89	3	Improved	AAT\|AAT
90	302546	S.propinquum	N\|N
91	31	Improved	AAT\|AAT
92	32	Improved	AAT\|AAT
93	34	Improved	N\|N
94	346	Landrace	AAT\|AAT
95	348	Wild sorghum	N\|N
96	353	Wild sorghum	AAT\|AAT
97	355	Wild sorghum	AAT\|AAT
98	357	Wild sorghum	AAT\|AAT
99	364	Wild sorghum	N\|N
100	367	Landrace	AAT\|AAT
101	s37	S.propinquum	AAT\|AAT
102	s38	S.propinquum	N\|N
103	370	Landrace	N\|N
104	377	Wild sorghum	AATAT\|AATAT
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	AAT\|AAT
107	40	Improved	AAT\|AAT
108	42	Improved	N\|N
109	43	Improved	AAT\|AAT
110	45	Improved	N\|N
111	47	Improved	N\|N
112	48	Improved	AAT\|AAT
113	51	Improved	AAT\|AAT
114	53	Improved	AAT\|AAT
115	56	Improved	AAT\|AAT
116	61	Improved	AAT\|AAT
117	62	Improved	AAT\|AAT
118	66	Landrace	AAT\|AAT
119	67	Improved	AAT\|AAT
120	68	Improved	N\|N
121	70	Improved	AAT\|AAT
122	73	Improved	N\|N
123	75	Improved	AAT\|AAT
124	88	Improved	AAT\|AAT
125	89	Improved	N\|N
126	91	Improved	AAT\|AAT
127	92	Improved	AAT\|AAT
128	93	Improved	N\|N
129	94	Improved	AAT\|AAT
130	95	Improved	N\|N
131	96	Improved	AAT\|AAT
132	97	Improved	AAT\|AAT
133	s1	Improved	AAT\|AAT
134	s36	Wild sorghum	AATATAT\|AATATAT
135	s2	Landrace	AAT\|AAT
136	s3	Improved	AAT\|AAT
137	s32	Improved	AAT\|AAT
138	s43	Weedy	AAT\|AAT
139	s40	Landrace	AAT\|AAT
140	s41	Weedy	AAT\|AAT
141	s39	Landrace	AAT\|AAT
142	s42	Landrace	AAT\|AATAT
143	s47	Improved	N\|N
144	s5	Landrace	AAT\|AAT
145	GW102	Landrace	AAT\|AAT
146	GW103	Landrace	AAT\|AAT
147	GW104	Landrace	AATATAT\|AATATAT
148	GW105	Landrace	N\|N
149	GW16	Landrace	AAT\|AATAT
150	GW2	Landrace	AAT\|AAT
151	GW34	Landrace	AAT\|AAT
152	GW37	Landrace	N\|N
153	GW58	Landrace	N\|N
154	GW59	Landrace	N\|N
155	GW9	Landrace	AAT\|AAT
156	s4	Weedy	AAT\|AAT
157	s6	Improved	AAT\|AAT
158	s7	Landrace	N\|N
159	s8	Landrace	AAT\|AAT
160	s9	Landrace	N\|N
161	J101	Landrace	N\|N
162	J103	Improved	N\|N
163	J112	Landrace	AAT\|AAT
164	J113	Improved	AAT\|AAT
165	J129	Improved	AAT\|AAT
166	J130	Improved	AAT\|AAT
167	J136	Improved	N\|N
168	J152	Improved	N\|N
169	J2	Landrace	AAT\|AAT
170	J20	Landrace	AAT\|AAT
171	J4	Landrace	N\|N
172	J42	Landrace	AAT\|AAT
173	J44	Landrace	N\|N
174	J49	Landrace	N\|N
175	J52	Landrace	N\|N
176	J53	Landrace	AAT\|AAT
177	J54	Landrace	AAT\|AAT
178	J57	Landrace	N\|N
179	J59	Landrace	N\|N
180	J64	Landrace	AAT\|AAT
181	J66	Landrace	N\|N
182	J67	Landrace	N\|N
183	J69	Landrace	AAT\|AAT
184	J87	Landrace	AAT\|AAT
185	J99	Landrace	N\|N
186	s45	Landrace	AAT\|AAT
187	s11	Improved	AAT\|AAT
188	s10	Improved	AAT\|AAT
189	s46	Improved	AAT\|AAT
190	s12	Improved	AAT\|AAT
191	s13	Landrace	AAT\|AAT
192	MHMD	Landrace	N\|N
193	s14	Improved	AAT\|AAT
194	s15	Improved	AAT\|AAT
195	s34	Weedy	AAT\|AAT
196	s33	Wild sorghum	AATATAT\|AATATAT
197	s21	Wild sorghum	AAT\|AAT
198	s16	Wild sorghum	N\|N
199	s44	Improved	AAT\|AAT
200	s35	Landrace	AAT\|AAT
201	s31	Wild sorghum	N\|N
202	s17	Improved	AAT\|AAT
203	s18	Improved	AAT\|AAT
204	s20	Improved	AAT\|AAT
205	s19	Improved	AAT\|AAT
206	s22	Landrace	AAT\|AAT
207	s23	Landrace	AAT\|AAT
208	s24	Landrace	AAT\|AAT
209	s25	Landrace	AAT\|AAT
210	s26	Landrace	AAT\|AAT
211	s27	Landrace	AAT\|AAT
212	s28	Landrace	AAT\|AAT
213	s29	Landrace	AAT\|AAT
214	s30	Landrace	AAT\|AAT
215	SL25	Wild sorghum	A\|A
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	N\|N
218	SL109	Wild sorghum	AAT\|AAT
219	SL12	Wild sorghum	AAT\|A
220	SL129	Wild sorghum	N\|N
221	SL130	Wild sorghum	AAT\|AAT
222	SL135	Wild sorghum	AAT\|AAT
223	SL136	Wild sorghum	AAT\|AAT
224	SL137	Wild sorghum	AAT\|AAT
225	SL138	Wild sorghum	AATAT\|AATAT
226	SL140	Wild sorghum	AATAT\|AATAT
227	SL141	Wild sorghum	N\|N
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	AATAT\|AATAT
230	SL32	Wild sorghum	AAT\|A
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	N\|N
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	AAT\|AAT
235	SL41	Wild sorghum	AAT\|AAT
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	AAT\|AAT
238	SL49	Wild sorghum	AAT\|AAT
239	SL51	Wild sorghum	AAT\|AAT
240	SL53	Wild sorghum	AATAT\|A
241	SL62	Wild sorghum	AAT\|AAT
242	SL83	Wild sorghum	AAT\|AAT
243	SL97	Landrace	AATATAT\|AATATAT
244	s48	Improved	AAT\|AAT
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	AATATAT\|AATATAT
247	Tu30	Wild sorghum	AAT\|AATATAT
248	Tu5	Wild sorghum	AAT\|AAT
249	WSC5	Landrace	N\|N
250	WSC15	Landrace	AAT\|AAT
251	WSC19	Landrace	AAT\|AATAT
252	WSC30	Landrace	AAT\|AAT
253	WSC52	Landrace	AAT\|AAT
254	WSC6	Landrace	AAT\|AAT
255	WSC61	Landrace	N\|N
256	WSC71	Improved	AAT\|AAT
257	WSC72	Landrace	AAT\|AAT
258	WSC79	Landrace	AAT\|AAT
259	WSC94	Landrace	AAT\|AAT
260	WSC99	Landrace	AAT\|AATAT
261	WSC100	Landrace	AATATAT\|AATATAT
262	WSC104	Landrace	AATATAT\|AATATAT
263	WSC105	Landrace	AAT\|AAT
264	WSC12	Landrace	AAT\|AAT
265	WSC13	Landrace	AAT\|AAT
266	WSC16	Landrace	AAT\|AAT
267	WSC17	Landrace	N\|N
268	WSC18	Landrace	AAT\|AAT
269	WSC20	Landrace	AAT\|AAT
270	WSC24	Landrace	N\|N
271	WSC25	Landrace	AAT\|AAT
272	WSC29	Landrace	AAT\|AAT
273	WSC31	Landrace	AAT\|AAT
274	WSC32	Landrace	AAT\|AAT
275	WSC34	Landrace	AAT\|AAT
276	WSC38	Landrace	AAT\|AAT
277	WSC39	Improved	AAT\|AAT
278	WSC40	Landrace	AAT\|AAT
279	WSC54	Landrace	AATATAT\|AATATAT
280	WSC56	Landrace	AAT\|AAT
281	WSC59	Landrace	AAT\|AAT
282	WSC68	Landrace	AAT\|AAT
283	WSC70	Landrace	AAT\|AAT
284	WSC73	Landrace	AAT\|AAT
285	WSC81	Landrace	AAT\|AAT
286	WSC85	Improved	AAT\|AAT
287	WSC91	Landrace	AAT\|AAT
288	WSC93	Landrace	AAT\|AAT
289	WSC98	Landrace	AAT\|AAT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p
sbi33825553	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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