Variation ID : sbi33825562

Variation Detail



Variation ID sbi33825562
Type INDEL
Position Chr01 36904-36909
Ref /Alleles AAGGGG/ A
MAF A: 0.014
5' Flank ATGGAGGCCCAAGAAGAAGCGTCATCCTAA
3' Flank AAAAAACTAGGTCAGTACTTGCTCTAGAGT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved AAGGGG|AAGGGG
2 103 Improved N|N
3 107 Improved AAGGGG|AAGGGG
4 11 Improved AAGGGG|AAGGGG
5 110 Improved AAGGGG|AAGGGG
6 123 Landrace N|N
7 131 Improved AAGGGG|AAGGGG
8 132 Improved AAGGGG|AAGGGG
9 135 Improved AAGGGG|AAGGGG
10 137 Improved AAGGGG|AAGGGG
11 138 Improved AAGGGG|AAGGGG
12 14 Improved AAGGGG|AAGGGG
13 140 Improved AAGGGG|AAGGGG
14 141 Improved AAGGGG|AAGGGG
15 144 Improved AAGGGG|AAGGGG
16 150 Improved AAGGGG|AAGGGG
17 154 Improved AAGGGG|AAGGGG
18 159 Landrace AAGGGG|AAGGGG
19 16 Improved AAGGGG|AAGGGG
20 161 Landrace AAGGGG|AAGGGG
21 167 Improved AAGGGG|AAGGGG
22 168 Improved AAGGGG|AAGGGG
23 170 Improved AAGGGG|AAGGGG
24 173 Improved AAGGGG|AAGGGG
25 175 Improved AAGGGG|AAGGGG
26 176 Improved AAGGGG|AAGGGG
27 182 Landrace AAGGGG|AAGGGG
28 186 Improved AAGGGG|AAGGGG
29 190 Improved AAGGGG|AAGGGG
30 192 Improved AAGGGG|AAGGGG
31 194 Improved AAGGGG|AAGGGG
32 195 Improved AAGGGG|AAGGGG
33 197 Improved AAGGGG|AAGGGG
34 J22 Landrace N|N
35 J26 Landrace AAGGGG|AAGGGG
36 J5 Landrace AAGGGG|AAGGGG
37 J50 Landrace AAGGGG|AAGGGG
38 2001 Landrace AAGGGG|AAGGGG
39 2005 Improved N|N
40 2008 Improved AAGGGG|AAGGGG
41 2009 Landrace AAGGGG|AAGGGG
42 201 Improved AAGGGG|AAGGGG
43 2010 Landrace AAGGGG|AAGGGG
44 2016 Improved N|N
45 2019 Improved AAGGGG|AAGGGG
46 202 Improved AAGGGG|AAGGGG
47 2021 Improved AAGGGG|AAGGGG
48 2023 Improved N|N
49 2026 Improved AAGGGG|AAGGGG
50 2029 Improved AAGGGG|AAGGGG
51 2030 Landrace AAGGGG|AAGGGG
52 2031 Landrace AAGGGG|AAGGGG
53 2036 Improved AAGGGG|AAGGGG
54 2037 Improved AAGGGG|AAGGGG
55 2038 Improved AAGGGG|AAGGGG
56 2039 Improved AAGGGG|AAGGGG
57 204 Improved AAGGGG|AAGGGG
58 2042 Improved AAGGGG|AAGGGG
59 2043 Improved AAGGGG|AAGGGG
60 2048 Improved AAGGGG|AAGGGG
61 2049 Improved AAGGGG|AAGGGG
62 205 Improved AAGGGG|AAGGGG
63 2050 Improved AAGGGG|AAGGGG
64 2052 Improved AAGGGG|AAGGGG
65 2054 Improved AAGGGG|AAGGGG
66 2056 Improved AAGGGG|AAGGGG
67 2059 Improved AAGGGG|AAGGGG
68 206 Improved AAGGGG|AAGGGG
69 2064 Improved AAGGGG|AAGGGG
70 2065 Improved AAGGGG|AAGGGG
71 2067 Improved AAGGGG|AAGGGG
72 2068 Improved AAGGGG|AAGGGG
73 2069 Improved AAGGGG|AAGGGG
74 2071 Improved AAGGGG|AAGGGG
75 2074 Improved AAGGGG|AAGGGG
76 2075 Improved AAGGGG|AAGGGG
77 2076 Improved AAGGGG|AAGGGG
78 2080 Improved AAGGGG|AAGGGG
79 2081 Improved AAGGGG|AAGGGG
80 2082 Improved AAGGGG|AAGGGG
81 2086 Improved AAGGGG|AAGGGG
82 2088 Improved AAGGGG|AAGGGG
83 260 Wild sorghum AAGGGG|AAGGGG
84 261 Improved AAGGGG|AAGGGG
85 262 Improved AAGGGG|AAGGGG
86 263 Improved AAGGGG|AAGGGG
87 286 Improved AAGGGG|AAGGGG
88 29 Improved AAGGGG|AAGGGG
89 3 Improved AAGGGG|AAGGGG
90 302546 S.propinquum AAGGGG|AAGGGG
91 31 Improved AAGGGG|AAGGGG
92 32 Improved AAGGGG|AAGGGG
93 34 Improved AAGGGG|AAGGGG
94 346 Landrace AAGGGG|AAGGGG
95 348 Wild sorghum A|A
96 353 Wild sorghum AAGGGG|AAGGGG
97 355 Wild sorghum AAGGGG|AAGGGG
98 357 Wild sorghum A|A
99 364 Wild sorghum AAGGGG|AAGGGG
100 367 Landrace AAGGGG|AAGGGG
101 s37 S.propinquum AAGGGG|AAGGGG
102 s38 S.propinquum AAGGGG|AAGGGG
103 370 Landrace AAGGGG|AAGGGG
104 377 Wild sorghum AAGGGG|AAGGGG
105 392 Wild sorghum A|A
106 394 Wild sorghum A|A
107 40 Improved AAGGGG|AAGGGG
108 42 Improved AAGGGG|AAGGGG
109 43 Improved AAGGGG|AAGGGG
110 45 Improved AAGGGG|AAGGGG
111 47 Improved AAGGGG|AAGGGG
112 48 Improved AAGGGG|AAGGGG
113 51 Improved AAGGGG|AAGGGG
114 53 Improved AAGGGG|AAGGGG
115 56 Improved AAGGGG|AAGGGG
116 61 Improved AAGGGG|AAGGGG
117 62 Improved AAGGGG|AAGGGG
118 66 Landrace AAGGGG|AAGGGG
119 67 Improved AAGGGG|AAGGGG
120 68 Improved AAGGGG|AAGGGG
121 70 Improved AAGGGG|AAGGGG
122 73 Improved AAGGGG|AAGGGG
123 75 Improved AAGGGG|AAGGGG
124 88 Improved AAGGGG|AAGGGG
125 89 Improved AAGGGG|AAGGGG
126 91 Improved AAGGGG|AAGGGG
127 92 Improved AAGGGG|AAGGGG
128 93 Improved AAGGGG|AAGGGG
129 94 Improved AAGGGG|AAGGGG
130 95 Improved AAGGGG|AAGGGG
131 96 Improved AAGGGG|AAGGGG
132 97 Improved AAGGGG|AAGGGG
133 s1 Improved AAGGGG|AAGGGG
134 s36 Wild sorghum AAGGGG|AAGGGG
135 s2 Landrace AAGGGG|AAGGGG
136 s3 Improved AAGGGG|AAGGGG
137 s32 Improved AAGGGG|AAGGGG
138 s43 Weedy AAGGGG|AAGGGG
139 s40 Landrace AAGGGG|AAGGGG
140 s41 Weedy AAGGGG|AAGGGG
141 s39 Landrace AAGGGG|AAGGGG
142 s42 Landrace AAGGGG|AAGGGG
143 s47 Improved AAGGGG|AAGGGG
144 s5 Landrace AAGGGG|AAGGGG
145 GW102 Landrace AAGGGG|AAGGGG
146 GW103 Landrace AAGGGG|AAGGGG
147 GW104 Landrace AAGGGG|AAGGGG
148 GW105 Landrace AAGGGG|AAGGGG
149 GW16 Landrace AAGGGG|AAGGGG
150 GW2 Landrace AAGGGG|AAGGGG
151 GW34 Landrace AAGGGG|AAGGGG
152 GW37 Landrace AAGGGG|AAGGGG
153 GW58 Landrace AAGGGG|AAGGGG
154 GW59 Landrace AAGGGG|AAGGGG
155 GW9 Landrace AAGGGG|AAGGGG
156 s4 Weedy AAGGGG|AAGGGG
157 s6 Improved AAGGGG|AAGGGG
158 s7 Landrace AAGGGG|AAGGGG
159 s8 Landrace AAGGGG|AAGGGG
160 s9 Landrace AAGGGG|AAGGGG
161 J101 Landrace AAGGGG|AAGGGG
162 J103 Improved AAGGGG|AAGGGG
163 J112 Landrace AAGGGG|AAGGGG
164 J113 Improved AAGGGG|AAGGGG
165 J129 Improved AAGGGG|AAGGGG
166 J130 Improved AAGGGG|AAGGGG
167 J136 Improved AAGGGG|AAGGGG
168 J152 Improved AAGGGG|AAGGGG
169 J2 Landrace AAGGGG|AAGGGG
170 J20 Landrace AAGGGG|AAGGGG
171 J4 Landrace AAGGGG|AAGGGG
172 J42 Landrace AAGGGG|AAGGGG
173 J44 Landrace AAGGGG|AAGGGG
174 J49 Landrace AAGGGG|AAGGGG
175 J52 Landrace AAGGGG|AAGGGG
176 J53 Landrace AAGGGG|AAGGGG
177 J54 Landrace AAGGGG|AAGGGG
178 J57 Landrace AAGGGG|AAGGGG
179 J59 Landrace AAGGGG|AAGGGG
180 J64 Landrace AAGGGG|AAGGGG
181 J66 Landrace AAGGGG|AAGGGG
182 J67 Landrace AAGGGG|AAGGGG
183 J69 Landrace AAGGGG|AAGGGG
184 J87 Landrace AAGGGG|AAGGGG
185 J99 Landrace AAGGGG|AAGGGG
186 s45 Landrace AAGGGG|AAGGGG
187 s11 Improved AAGGGG|AAGGGG
188 s10 Improved AAGGGG|AAGGGG
189 s46 Improved AAGGGG|AAGGGG
190 s12 Improved AAGGGG|AAGGGG
191 s13 Landrace AAGGGG|AAGGGG
192 MHMD Landrace AAGGGG|AAGGGG
193 s14 Improved AAGGGG|AAGGGG
194 s15 Improved AAGGGG|AAGGGG
195 s34 Weedy AAGGGG|AAGGGG
196 s33 Wild sorghum AAGGGG|AAGGGG
197 s21 Wild sorghum AAGGGG|AAGGGG
198 s16 Wild sorghum AAGGGG|AAGGGG
199 s44 Improved AAGGGG|AAGGGG
200 s35 Landrace AAGGGG|AAGGGG
201 s31 Wild sorghum AAGGGG|AAGGGG
202 s17 Improved AAGGGG|AAGGGG
203 s18 Improved AAGGGG|AAGGGG
204 s20 Improved AAGGGG|AAGGGG
205 s19 Improved AAGGGG|AAGGGG
206 s22 Landrace AAGGGG|AAGGGG
207 s23 Landrace AAGGGG|AAGGGG
208 s24 Landrace AAGGGG|AAGGGG
209 s25 Landrace AAGGGG|AAGGGG
210 s26 Landrace AAGGGG|AAGGGG
211 s27 Landrace AAGGGG|AAGGGG
212 s28 Landrace AAGGGG|AAGGGG
213 s29 Landrace AAGGGG|AAGGGG
214 s30 Landrace AAGGGG|AAGGGG
215 SL25 Wild sorghum AAGGGG|AAGGGG
216 SL105 Wild sorghum AAGGGG|AAGGGG
217 SL108 Wild sorghum AAGGGG|AAGGGG
218 SL109 Wild sorghum AAGGGG|AAGGGG
219 SL12 Wild sorghum AAGGGG|AAGGGG
220 SL129 Wild sorghum AAGGGG|AAGGGG
221 SL130 Wild sorghum AAGGGG|AAGGGG
222 SL135 Wild sorghum AAGGGG|AAGGGG
223 SL136 Wild sorghum AAGGGG|AAGGGG
224 SL137 Wild sorghum AAGGGG|AAGGGG
225 SL138 Wild sorghum AAGGGG|AAGGGG
226 SL140 Wild sorghum AAGGGG|AAGGGG
227 SL141 Wild sorghum AAGGGG|AAGGGG
228 SL19 Wild sorghum AAGGGG|AAGGGG
229 SL28 Wild sorghum AAGGGG|AAGGGG
230 SL32 Wild sorghum AAGGGG|AAGGGG
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum AAGGGG|AAGGGG
233 SL37 Wild sorghum AAGGGG|AAGGGG
234 SL39 Wild sorghum AAGGGG|AAGGGG
235 SL41 Wild sorghum AAGGGG|AAGGGG
236 SL43 Wild sorghum AAGGGG|AAGGGG
237 SL47 Wild sorghum AAGGGG|AAGGGG
238 SL49 Wild sorghum AAGGGG|AAGGGG
239 SL51 Wild sorghum AAGGGG|AAGGGG
240 SL53 Wild sorghum AAGGGG|AAGGGG
241 SL62 Wild sorghum AAGGGG|AAGGGG
242 SL83 Wild sorghum AAGGGG|AAGGGG
243 SL97 Landrace AAGGGG|AAGGGG
244 s48 Improved AAGGGG|AAGGGG
245 Tu13 Wild sorghum AAGGGG|AAGGGG
246 Tu14 Wild sorghum AAGGGG|AAGGGG
247 Tu30 Wild sorghum AAGGGG|AAGGGG
248 Tu5 Wild sorghum AAGGGG|AAGGGG
249 WSC5 Landrace AAGGGG|AAGGGG
250 WSC15 Landrace AAGGGG|AAGGGG
251 WSC19 Landrace AAGGGG|AAGGGG
252 WSC30 Landrace AAGGGG|AAGGGG
253 WSC52 Landrace AAGGGG|AAGGGG
254 WSC6 Landrace AAGGGG|AAGGGG
255 WSC61 Landrace AAGGGG|AAGGGG
256 WSC71 Improved AAGGGG|AAGGGG
257 WSC72 Landrace AAGGGG|AAGGGG
258 WSC79 Landrace AAGGGG|AAGGGG
259 WSC94 Landrace AAGGGG|AAGGGG
260 WSC99 Landrace AAGGGG|AAGGGG
261 WSC100 Landrace AAGGGG|AAGGGG
262 WSC104 Landrace AAGGGG|AAGGGG
263 WSC105 Landrace AAGGGG|AAGGGG
264 WSC12 Landrace AAGGGG|AAGGGG
265 WSC13 Landrace AAGGGG|AAGGGG
266 WSC16 Landrace AAGGGG|AAGGGG
267 WSC17 Landrace AAGGGG|AAGGGG
268 WSC18 Landrace AAGGGG|AAGGGG
269 WSC20 Landrace AAGGGG|AAGGGG
270 WSC24 Landrace AAGGGG|AAGGGG
271 WSC25 Landrace AAGGGG|AAGGGG
272 WSC29 Landrace AAGGGG|AAGGGG
273 WSC31 Landrace AAGGGG|AAGGGG
274 WSC32 Landrace AAGGGG|AAGGGG
275 WSC34 Landrace AAGGGG|AAGGGG
276 WSC38 Landrace AAGGGG|AAGGGG
277 WSC39 Improved AAGGGG|AAGGGG
278 WSC40 Landrace AAGGGG|AAGGGG
279 WSC54 Landrace AAGGGG|AAGGGG
280 WSC56 Landrace AAGGGG|AAGGGG
281 WSC59 Landrace AAGGGG|AAGGGG
282 WSC68 Landrace N|N
283 WSC70 Landrace AAGGGG|AAGGGG
284 WSC73 Landrace AAGGGG|AAGGGG
285 WSC81 Landrace AAGGGG|AAGGGG
286 WSC85 Improved AAGGGG|AAGGGG
287 WSC91 Landrace AAGGGG|AAGGGG
288 WSC93 Landrace AAGGGG|AAGGGG
289 WSC98 Landrace AAGGGG|AAGGGG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825562 Sobic.001G000400 splice region variant |LOW Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825562 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825562 Sobic.001G000400 splice region variant |LOW Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825562 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825562 Sobic.001G000400 splice region variant |LOW Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825562 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825562 Sobic.001G000400 splice region variant |LOW Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825562 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825562 Sobic.001G000400 splice region variant |LOW Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825562 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825562 Sobic.001G000400 splice region variant |LOW Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825562 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser