sorgsd

Variation ID : sbi33825564

Variation Detail

Variation ID	sbi33825564
Type	INDEL
Position	Chr01 37110-37118
Ref /Alleles	ATGAGAACT/ A
MAF	A: 0.011
5' Flank	ATTCCTTTTATAAAGAAGATGAATGAGAAG
3' Flank	TGAGAAGGATACATGACATTTTAGTCTATC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	ATGAGAACT\|ATGAGAACT
2	103	Improved	ATGAGAACT\|ATGAGAACT
3	107	Improved	ATGAGAACT\|ATGAGAACT
4	11	Improved	ATGAGAACT\|ATGAGAACT
5	110	Improved	ATGAGAACT\|ATGAGAACT
6	123	Landrace	N\|N
7	131	Improved	ATGAGAACT\|ATGAGAACT
8	132	Improved	ATGAGAACT\|ATGAGAACT
9	135	Improved	ATGAGAACT\|ATGAGAACT
10	137	Improved	ATGAGAACT\|ATGAGAACT
11	138	Improved	ATGAGAACT\|ATGAGAACT
12	14	Improved	ATGAGAACT\|ATGAGAACT
13	140	Improved	ATGAGAACT\|ATGAGAACT
14	141	Improved	ATGAGAACT\|ATGAGAACT
15	144	Improved	ATGAGAACT\|ATGAGAACT
16	150	Improved	ATGAGAACT\|ATGAGAACT
17	154	Improved	ATGAGAACT\|ATGAGAACT
18	159	Landrace	ATGAGAACT\|ATGAGAACT
19	16	Improved	ATGAGAACT\|ATGAGAACT
20	161	Landrace	ATGAGAACT\|ATGAGAACT
21	167	Improved	ATGAGAACT\|ATGAGAACT
22	168	Improved	ATGAGAACT\|ATGAGAACT
23	170	Improved	ATGAGAACT\|ATGAGAACT
24	173	Improved	ATGAGAACT\|ATGAGAACT
25	175	Improved	ATGAGAACT\|ATGAGAACT
26	176	Improved	ATGAGAACT\|ATGAGAACT
27	182	Landrace	ATGAGAACT\|ATGAGAACT
28	186	Improved	ATGAGAACT\|ATGAGAACT
29	190	Improved	ATGAGAACT\|ATGAGAACT
30	192	Improved	ATGAGAACT\|ATGAGAACT
31	194	Improved	ATGAGAACT\|ATGAGAACT
32	195	Improved	ATGAGAACT\|ATGAGAACT
33	197	Improved	ATGAGAACT\|ATGAGAACT
34	J22	Landrace	ATGAGAACT\|ATGAGAACT
35	J26	Landrace	ATGAGAACT\|ATGAGAACT
36	J5	Landrace	ATGAGAACT\|ATGAGAACT
37	J50	Landrace	ATGAGAACT\|ATGAGAACT
38	2001	Landrace	ATGAGAACT\|ATGAGAACT
39	2005	Improved	ATGAGAACT\|ATGAGAACT
40	2008	Improved	ATGAGAACT\|ATGAGAACT
41	2009	Landrace	ATGAGAACT\|ATGAGAACT
42	201	Improved	ATGAGAACT\|ATGAGAACT
43	2010	Landrace	ATGAGAACT\|ATGAGAACT
44	2016	Improved	ATGAGAACT\|ATGAGAACT
45	2019	Improved	ATGAGAACT\|ATGAGAACT
46	202	Improved	ATGAGAACT\|ATGAGAACT
47	2021	Improved	ATGAGAACT\|ATGAGAACT
48	2023	Improved	ATGAGAACT\|ATGAGAACT
49	2026	Improved	ATGAGAACT\|ATGAGAACT
50	2029	Improved	ATGAGAACT\|ATGAGAACT
51	2030	Landrace	ATGAGAACT\|ATGAGAACT
52	2031	Landrace	ATGAGAACT\|ATGAGAACT
53	2036	Improved	ATGAGAACT\|ATGAGAACT
54	2037	Improved	N\|N
55	2038	Improved	ATGAGAACT\|ATGAGAACT
56	2039	Improved	ATGAGAACT\|ATGAGAACT
57	204	Improved	ATGAGAACT\|ATGAGAACT
58	2042	Improved	ATGAGAACT\|ATGAGAACT
59	2043	Improved	ATGAGAACT\|ATGAGAACT
60	2048	Improved	ATGAGAACT\|ATGAGAACT
61	2049	Improved	ATGAGAACT\|ATGAGAACT
62	205	Improved	ATGAGAACT\|ATGAGAACT
63	2050	Improved	ATGAGAACT\|ATGAGAACT
64	2052	Improved	ATGAGAACT\|ATGAGAACT
65	2054	Improved	ATGAGAACT\|ATGAGAACT
66	2056	Improved	ATGAGAACT\|ATGAGAACT
67	2059	Improved	ATGAGAACT\|ATGAGAACT
68	206	Improved	ATGAGAACT\|ATGAGAACT
69	2064	Improved	ATGAGAACT\|ATGAGAACT
70	2065	Improved	ATGAGAACT\|ATGAGAACT
71	2067	Improved	ATGAGAACT\|ATGAGAACT
72	2068	Improved	N\|N
73	2069	Improved	ATGAGAACT\|ATGAGAACT
74	2071	Improved	ATGAGAACT\|ATGAGAACT
75	2074	Improved	ATGAGAACT\|ATGAGAACT
76	2075	Improved	ATGAGAACT\|ATGAGAACT
77	2076	Improved	ATGAGAACT\|ATGAGAACT
78	2080	Improved	ATGAGAACT\|ATGAGAACT
79	2081	Improved	ATGAGAACT\|ATGAGAACT
80	2082	Improved	ATGAGAACT\|ATGAGAACT
81	2086	Improved	ATGAGAACT\|ATGAGAACT
82	2088	Improved	ATGAGAACT\|ATGAGAACT
83	260	Wild sorghum	N\|N
84	261	Improved	ATGAGAACT\|ATGAGAACT
85	262	Improved	ATGAGAACT\|ATGAGAACT
86	263	Improved	ATGAGAACT\|ATGAGAACT
87	286	Improved	N\|N
88	29	Improved	N\|N
89	3	Improved	ATGAGAACT\|ATGAGAACT
90	302546	S.propinquum	A\|A
91	31	Improved	ATGAGAACT\|ATGAGAACT
92	32	Improved	ATGAGAACT\|ATGAGAACT
93	34	Improved	ATGAGAACT\|ATGAGAACT
94	346	Landrace	ATGAGAACT\|ATGAGAACT
95	348	Wild sorghum	ATGAGAACT\|ATGAGAACT
96	353	Wild sorghum	ATGAGAACT\|ATGAGAACT
97	355	Wild sorghum	N\|N
98	357	Wild sorghum	ATGAGAACT\|ATGAGAACT
99	364	Wild sorghum	ATGAGAACT\|ATGAGAACT
100	367	Landrace	ATGAGAACT\|ATGAGAACT
101	s37	S.propinquum	A\|A
102	s38	S.propinquum	A\|A
103	370	Landrace	N\|N
104	377	Wild sorghum	ATGAGAACT\|ATGAGAACT
105	392	Wild sorghum	ATGAGAACT\|ATGAGAACT
106	394	Wild sorghum	ATGAGAACT\|ATGAGAACT
107	40	Improved	ATGAGAACT\|ATGAGAACT
108	42	Improved	N\|N
109	43	Improved	ATGAGAACT\|ATGAGAACT
110	45	Improved	ATGAGAACT\|ATGAGAACT
111	47	Improved	ATGAGAACT\|ATGAGAACT
112	48	Improved	ATGAGAACT\|ATGAGAACT
113	51	Improved	ATGAGAACT\|ATGAGAACT
114	53	Improved	ATGAGAACT\|ATGAGAACT
115	56	Improved	ATGAGAACT\|ATGAGAACT
116	61	Improved	ATGAGAACT\|ATGAGAACT
117	62	Improved	ATGAGAACT\|ATGAGAACT
118	66	Landrace	ATGAGAACT\|ATGAGAACT
119	67	Improved	ATGAGAACT\|ATGAGAACT
120	68	Improved	ATGAGAACT\|ATGAGAACT
121	70	Improved	ATGAGAACT\|ATGAGAACT
122	73	Improved	ATGAGAACT\|ATGAGAACT
123	75	Improved	ATGAGAACT\|ATGAGAACT
124	88	Improved	ATGAGAACT\|ATGAGAACT
125	89	Improved	ATGAGAACT\|ATGAGAACT
126	91	Improved	ATGAGAACT\|ATGAGAACT
127	92	Improved	ATGAGAACT\|ATGAGAACT
128	93	Improved	ATGAGAACT\|ATGAGAACT
129	94	Improved	ATGAGAACT\|ATGAGAACT
130	95	Improved	ATGAGAACT\|ATGAGAACT
131	96	Improved	ATGAGAACT\|ATGAGAACT
132	97	Improved	ATGAGAACT\|ATGAGAACT
133	s1	Improved	ATGAGAACT\|ATGAGAACT
134	s36	Wild sorghum	ATGAGAACT\|ATGAGAACT
135	s2	Landrace	ATGAGAACT\|ATGAGAACT
136	s3	Improved	ATGAGAACT\|ATGAGAACT
137	s32	Improved	ATGAGAACT\|ATGAGAACT
138	s43	Weedy	ATGAGAACT\|ATGAGAACT
139	s40	Landrace	ATGAGAACT\|ATGAGAACT
140	s41	Weedy	ATGAGAACT\|ATGAGAACT
141	s39	Landrace	ATGAGAACT\|ATGAGAACT
142	s42	Landrace	ATGAGAACT\|ATGAGAACT
143	s47	Improved	ATGAGAACT\|ATGAGAACT
144	s5	Landrace	ATGAGAACT\|ATGAGAACT
145	GW102	Landrace	ATGAGAACT\|ATGAGAACT
146	GW103	Landrace	ATGAGAACT\|ATGAGAACT
147	GW104	Landrace	ATGAGAACT\|ATGAGAACT
148	GW105	Landrace	ATGAGAACT\|ATGAGAACT
149	GW16	Landrace	ATGAGAACT\|ATGAGAACT
150	GW2	Landrace	ATGAGAACT\|ATGAGAACT
151	GW34	Landrace	ATGAGAACT\|ATGAGAACT
152	GW37	Landrace	ATGAGAACT\|ATGAGAACT
153	GW58	Landrace	ATGAGAACT\|ATGAGAACT
154	GW59	Landrace	ATGAGAACT\|ATGAGAACT
155	GW9	Landrace	ATGAGAACT\|ATGAGAACT
156	s4	Weedy	ATGAGAACT\|ATGAGAACT
157	s6	Improved	ATGAGAACT\|ATGAGAACT
158	s7	Landrace	ATGAGAACT\|ATGAGAACT
159	s8	Landrace	ATGAGAACT\|ATGAGAACT
160	s9	Landrace	ATGAGAACT\|ATGAGAACT
161	J101	Landrace	ATGAGAACT\|ATGAGAACT
162	J103	Improved	N\|N
163	J112	Landrace	ATGAGAACT\|ATGAGAACT
164	J113	Improved	ATGAGAACT\|ATGAGAACT
165	J129	Improved	ATGAGAACT\|ATGAGAACT
166	J130	Improved	ATGAGAACT\|ATGAGAACT
167	J136	Improved	ATGAGAACT\|ATGAGAACT
168	J152	Improved	ATGAGAACT\|ATGAGAACT
169	J2	Landrace	ATGAGAACT\|ATGAGAACT
170	J20	Landrace	ATGAGAACT\|ATGAGAACT
171	J4	Landrace	ATGAGAACT\|ATGAGAACT
172	J42	Landrace	ATGAGAACT\|ATGAGAACT
173	J44	Landrace	ATGAGAACT\|ATGAGAACT
174	J49	Landrace	ATGAGAACT\|ATGAGAACT
175	J52	Landrace	ATGAGAACT\|ATGAGAACT
176	J53	Landrace	ATGAGAACT\|ATGAGAACT
177	J54	Landrace	ATGAGAACT\|ATGAGAACT
178	J57	Landrace	ATGAGAACT\|ATGAGAACT
179	J59	Landrace	ATGAGAACT\|ATGAGAACT
180	J64	Landrace	N\|N
181	J66	Landrace	ATGAGAACT\|ATGAGAACT
182	J67	Landrace	N\|N
183	J69	Landrace	ATGAGAACT\|ATGAGAACT
184	J87	Landrace	ATGAGAACT\|ATGAGAACT
185	J99	Landrace	ATGAGAACT\|ATGAGAACT
186	s45	Landrace	ATGAGAACT\|ATGAGAACT
187	s11	Improved	ATGAGAACT\|ATGAGAACT
188	s10	Improved	ATGAGAACT\|ATGAGAACT
189	s46	Improved	ATGAGAACT\|ATGAGAACT
190	s12	Improved	ATGAGAACT\|ATGAGAACT
191	s13	Landrace	ATGAGAACT\|ATGAGAACT
192	MHMD	Landrace	ATGAGAACT\|ATGAGAACT
193	s14	Improved	ATGAGAACT\|ATGAGAACT
194	s15	Improved	ATGAGAACT\|ATGAGAACT
195	s34	Weedy	ATGAGAACT\|ATGAGAACT
196	s33	Wild sorghum	ATGAGAACT\|ATGAGAACT
197	s21	Wild sorghum	ATGAGAACT\|ATGAGAACT
198	s16	Wild sorghum	ATGAGAACT\|ATGAGAACT
199	s44	Improved	ATGAGAACT\|ATGAGAACT
200	s35	Landrace	ATGAGAACT\|ATGAGAACT
201	s31	Wild sorghum	ATGAGAACT\|ATGAGAACT
202	s17	Improved	ATGAGAACT\|ATGAGAACT
203	s18	Improved	ATGAGAACT\|ATGAGAACT
204	s20	Improved	ATGAGAACT\|ATGAGAACT
205	s19	Improved	ATGAGAACT\|ATGAGAACT
206	s22	Landrace	ATGAGAACT\|ATGAGAACT
207	s23	Landrace	ATGAGAACT\|ATGAGAACT
208	s24	Landrace	ATGAGAACT\|ATGAGAACT
209	s25	Landrace	ATGAGAACT\|ATGAGAACT
210	s26	Landrace	ATGAGAACT\|ATGAGAACT
211	s27	Landrace	ATGAGAACT\|ATGAGAACT
212	s28	Landrace	ATGAGAACT\|ATGAGAACT
213	s29	Landrace	ATGAGAACT\|ATGAGAACT
214	s30	Landrace	ATGAGAACT\|ATGAGAACT
215	SL25	Wild sorghum	ATGAGAACT\|ATGAGAACT
216	SL105	Wild sorghum	ATGAGAACT\|ATGAGAACT
217	SL108	Wild sorghum	ATGAGAACT\|ATGAGAACT
218	SL109	Wild sorghum	ATGAGAACT\|ATGAGAACT
219	SL12	Wild sorghum	ATGAGAACT\|ATGAGAACT
220	SL129	Wild sorghum	ATGAGAACT\|ATGAGAACT
221	SL130	Wild sorghum	ATGAGAACT\|ATGAGAACT
222	SL135	Wild sorghum	ATGAGAACT\|ATGAGAACT
223	SL136	Wild sorghum	ATGAGAACT\|ATGAGAACT
224	SL137	Wild sorghum	ATGAGAACT\|ATGAGAACT
225	SL138	Wild sorghum	ATGAGAACT\|ATGAGAACT
226	SL140	Wild sorghum	ATGAGAACT\|ATGAGAACT
227	SL141	Wild sorghum	ATGAGAACT\|ATGAGAACT
228	SL19	Wild sorghum	ATGAGAACT\|ATGAGAACT
229	SL28	Wild sorghum	ATGAGAACT\|ATGAGAACT
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	ATGAGAACT\|ATGAGAACT
233	SL37	Wild sorghum	ATGAGAACT\|ATGAGAACT
234	SL39	Wild sorghum	ATGAGAACT\|ATGAGAACT
235	SL41	Wild sorghum	ATGAGAACT\|ATGAGAACT
236	SL43	Wild sorghum	ATGAGAACT\|ATGAGAACT
237	SL47	Wild sorghum	ATGAGAACT\|ATGAGAACT
238	SL49	Wild sorghum	ATGAGAACT\|ATGAGAACT
239	SL51	Wild sorghum	ATGAGAACT\|ATGAGAACT
240	SL53	Wild sorghum	ATGAGAACT\|ATGAGAACT
241	SL62	Wild sorghum	ATGAGAACT\|ATGAGAACT
242	SL83	Wild sorghum	ATGAGAACT\|ATGAGAACT
243	SL97	Landrace	ATGAGAACT\|ATGAGAACT
244	s48	Improved	ATGAGAACT\|ATGAGAACT
245	Tu13	Wild sorghum	ATGAGAACT\|ATGAGAACT
246	Tu14	Wild sorghum	ATGAGAACT\|ATGAGAACT
247	Tu30	Wild sorghum	ATGAGAACT\|ATGAGAACT
248	Tu5	Wild sorghum	ATGAGAACT\|ATGAGAACT
249	WSC5	Landrace	ATGAGAACT\|ATGAGAACT
250	WSC15	Landrace	ATGAGAACT\|ATGAGAACT
251	WSC19	Landrace	ATGAGAACT\|ATGAGAACT
252	WSC30	Landrace	ATGAGAACT\|ATGAGAACT
253	WSC52	Landrace	ATGAGAACT\|ATGAGAACT
254	WSC6	Landrace	ATGAGAACT\|ATGAGAACT
255	WSC61	Landrace	ATGAGAACT\|ATGAGAACT
256	WSC71	Improved	ATGAGAACT\|ATGAGAACT
257	WSC72	Landrace	ATGAGAACT\|ATGAGAACT
258	WSC79	Landrace	ATGAGAACT\|ATGAGAACT
259	WSC94	Landrace	ATGAGAACT\|ATGAGAACT
260	WSC99	Landrace	ATGAGAACT\|ATGAGAACT
261	WSC100	Landrace	ATGAGAACT\|ATGAGAACT
262	WSC104	Landrace	ATGAGAACT\|ATGAGAACT
263	WSC105	Landrace	ATGAGAACT\|ATGAGAACT
264	WSC12	Landrace	ATGAGAACT\|ATGAGAACT
265	WSC13	Landrace	ATGAGAACT\|ATGAGAACT
266	WSC16	Landrace	ATGAGAACT\|ATGAGAACT
267	WSC17	Landrace	ATGAGAACT\|ATGAGAACT
268	WSC18	Landrace	ATGAGAACT\|ATGAGAACT
269	WSC20	Landrace	ATGAGAACT\|ATGAGAACT
270	WSC24	Landrace	ATGAGAACT\|ATGAGAACT
271	WSC25	Landrace	ATGAGAACT\|ATGAGAACT
272	WSC29	Landrace	ATGAGAACT\|ATGAGAACT
273	WSC31	Landrace	ATGAGAACT\|ATGAGAACT
274	WSC32	Landrace	ATGAGAACT\|ATGAGAACT
275	WSC34	Landrace	ATGAGAACT\|ATGAGAACT
276	WSC38	Landrace	ATGAGAACT\|ATGAGAACT
277	WSC39	Improved	ATGAGAACT\|ATGAGAACT
278	WSC40	Landrace	ATGAGAACT\|ATGAGAACT
279	WSC54	Landrace	N\|N
280	WSC56	Landrace	ATGAGAACT\|ATGAGAACT
281	WSC59	Landrace	ATGAGAACT\|ATGAGAACT
282	WSC68	Landrace	ATGAGAACT\|ATGAGAACT
283	WSC70	Landrace	ATGAGAACT\|ATGAGAACT
284	WSC73	Landrace	ATGAGAACT\|ATGAGAACT
285	WSC81	Landrace	ATGAGAACT\|ATGAGAACT
286	WSC85	Improved	ATGAGAACT\|ATGAGAACT
287	WSC91	Landrace	ATGAGAACT\|ATGAGAACT
288	WSC93	Landrace	ATGAGAACT\|ATGAGAACT
289	WSC98	Landrace	ATGAGAACT\|ATGAGAACT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825564	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825564	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825564	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825564	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825564	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825564	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser