Variation ID : sbi33825599

Variation Detail



Variation ID sbi33825599
Type INDEL
Position Chr01 40975-40976
Ref /Alleles CT/ C
MAF C: 0.005
5' Flank ATCTTTTACGCACAGCACCAACAAAAGGAA
3' Flank GCTCTTTCAAAGTTTACGGAGCGTGGCACG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved CT|CT
4 11 Improved N|N
5 110 Improved N|N
6 123 Landrace N|N
7 131 Improved CT|CT
8 132 Improved CT|CT
9 135 Improved CT|CT
10 137 Improved CT|CT
11 138 Improved CT|CT
12 14 Improved N|N
13 140 Improved CT|CT
14 141 Improved N|N
15 144 Improved N|N
16 150 Improved N|N
17 154 Improved CT|CT
18 159 Landrace N|N
19 16 Improved N|N
20 161 Landrace CT|CT
21 167 Improved N|N
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved CT|CT
25 175 Improved CT|CT
26 176 Improved N|N
27 182 Landrace CT|CT
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved N|N
31 194 Improved N|N
32 195 Improved N|N
33 197 Improved N|N
34 J22 Landrace CT|CT
35 J26 Landrace N|N
36 J5 Landrace CT|CT
37 J50 Landrace CT|CT
38 2001 Landrace CT|CT
39 2005 Improved CT|CT
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved CT|CT
43 2010 Landrace N|N
44 2016 Improved N|N
45 2019 Improved CT|CT
46 202 Improved CT|CT
47 2021 Improved CT|CT
48 2023 Improved CT|CT
49 2026 Improved N|N
50 2029 Improved N|N
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved CT|CT
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved CT|CT
58 2042 Improved CT|CT
59 2043 Improved CT|CT
60 2048 Improved CT|CT
61 2049 Improved CT|CT
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved CT|CT
65 2054 Improved N|N
66 2056 Improved N|N
67 2059 Improved N|N
68 206 Improved CT|CT
69 2064 Improved N|N
70 2065 Improved CT|CT
71 2067 Improved CT|CT
72 2068 Improved N|N
73 2069 Improved CT|CT
74 2071 Improved CT|CT
75 2074 Improved CT|CT
76 2075 Improved CT|CT
77 2076 Improved CT|CT
78 2080 Improved N|N
79 2081 Improved N|N
80 2082 Improved N|N
81 2086 Improved CT|CT
82 2088 Improved CT|CT
83 260 Wild sorghum N|N
84 261 Improved CT|CT
85 262 Improved N|N
86 263 Improved CT|CT
87 286 Improved N|N
88 29 Improved N|N
89 3 Improved CT|CT
90 302546 S.propinquum N|N
91 31 Improved CT|CT
92 32 Improved CT|CT
93 34 Improved N|N
94 346 Landrace N|N
95 348 Wild sorghum N|N
96 353 Wild sorghum CT|CT
97 355 Wild sorghum CT|CT
98 357 Wild sorghum CT|CT
99 364 Wild sorghum CT|CT
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum CT|CT
105 392 Wild sorghum CT|CT
106 394 Wild sorghum N|N
107 40 Improved N|N
108 42 Improved N|N
109 43 Improved CT|CT
110 45 Improved N|N
111 47 Improved N|N
112 48 Improved CT|CT
113 51 Improved CT|CT
114 53 Improved N|N
115 56 Improved CT|CT
116 61 Improved CT|CT
117 62 Improved CT|CT
118 66 Landrace N|N
119 67 Improved CT|CT
120 68 Improved N|N
121 70 Improved CT|CT
122 73 Improved CT|CT
123 75 Improved N|N
124 88 Improved CT|CT
125 89 Improved N|N
126 91 Improved CT|CT
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved CT|CT
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved N|N
133 s1 Improved CT|CT
134 s36 Wild sorghum CT|CT
135 s2 Landrace CT|CT
136 s3 Improved CT|CT
137 s32 Improved CT|CT
138 s43 Weedy CT|CT
139 s40 Landrace CT|CT
140 s41 Weedy CT|CT
141 s39 Landrace CT|CT
142 s42 Landrace CT|CT
143 s47 Improved CT|CT
144 s5 Landrace CT|CT
145 GW102 Landrace CT|CT
146 GW103 Landrace N|N
147 GW104 Landrace CT|CT
148 GW105 Landrace CT|CT
149 GW16 Landrace N|N
150 GW2 Landrace N|N
151 GW34 Landrace CT|CT
152 GW37 Landrace CT|CT
153 GW58 Landrace CT|CT
154 GW59 Landrace CT|CT
155 GW9 Landrace CT|CT
156 s4 Weedy CT|CT
157 s6 Improved CT|CT
158 s7 Landrace CT|CT
159 s8 Landrace CT|CT
160 s9 Landrace CT|CT
161 J101 Landrace CT|CT
162 J103 Improved N|N
163 J112 Landrace CT|CT
164 J113 Improved CT|CT
165 J129 Improved N|N
166 J130 Improved N|N
167 J136 Improved CT|CT
168 J152 Improved CT|CT
169 J2 Landrace N|N
170 J20 Landrace N|N
171 J4 Landrace CT|CT
172 J42 Landrace CT|CT
173 J44 Landrace CT|CT
174 J49 Landrace N|N
175 J52 Landrace N|N
176 J53 Landrace CT|CT
177 J54 Landrace CT|CT
178 J57 Landrace CT|CT
179 J59 Landrace N|N
180 J64 Landrace CT|CT
181 J66 Landrace N|N
182 J67 Landrace N|N
183 J69 Landrace CT|CT
184 J87 Landrace CT|CT
185 J99 Landrace N|N
186 s45 Landrace CT|CT
187 s11 Improved CT|CT
188 s10 Improved CT|CT
189 s46 Improved CT|CT
190 s12 Improved CT|CT
191 s13 Landrace CT|CT
192 MHMD Landrace CT|CT
193 s14 Improved CT|CT
194 s15 Improved CT|CT
195 s34 Weedy CT|CT
196 s33 Wild sorghum CT|CT
197 s21 Wild sorghum CT|CT
198 s16 Wild sorghum CT|CT
199 s44 Improved CT|CT
200 s35 Landrace CT|CT
201 s31 Wild sorghum CT|CT
202 s17 Improved CT|CT
203 s18 Improved CT|CT
204 s20 Improved CT|CT
205 s19 Improved CT|CT
206 s22 Landrace CT|CT
207 s23 Landrace CT|CT
208 s24 Landrace CT|CT
209 s25 Landrace CT|CT
210 s26 Landrace CT|CT
211 s27 Landrace CT|CT
212 s28 Landrace CT|CT
213 s29 Landrace CT|CT
214 s30 Landrace CT|CT
215 SL25 Wild sorghum CT|CT
216 SL105 Wild sorghum CT|CT
217 SL108 Wild sorghum CT|CT
218 SL109 Wild sorghum CT|CT
219 SL12 Wild sorghum CT|CT
220 SL129 Wild sorghum CT|CT
221 SL130 Wild sorghum N|N
222 SL135 Wild sorghum CT|CT
223 SL136 Wild sorghum CT|CT
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum CT|CT
227 SL141 Wild sorghum CT|CT
228 SL19 Wild sorghum CT|CT
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum C|C
231 SL35 Wild sorghum CT|CT
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum CT|CT
235 SL41 Wild sorghum CT|CT
236 SL43 Wild sorghum CT|CT
237 SL47 Wild sorghum CT|CT
238 SL49 Wild sorghum CT|CT
239 SL51 Wild sorghum CT|CT
240 SL53 Wild sorghum CT|CT
241 SL62 Wild sorghum CT|CT
242 SL83 Wild sorghum CT|CT
243 SL97 Landrace CT|CT
244 s48 Improved CT|CT
245 Tu13 Wild sorghum CT|CT
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum CT|CT
248 Tu5 Wild sorghum CT|CT
249 WSC5 Landrace CT|CT
250 WSC15 Landrace CT|CT
251 WSC19 Landrace N|N
252 WSC30 Landrace N|N
253 WSC52 Landrace N|N
254 WSC6 Landrace CT|CT
255 WSC61 Landrace N|N
256 WSC71 Improved N|N
257 WSC72 Landrace CT|CT
258 WSC79 Landrace N|N
259 WSC94 Landrace N|N
260 WSC99 Landrace N|N
261 WSC100 Landrace CT|CT
262 WSC104 Landrace CT|CT
263 WSC105 Landrace CT|CT
264 WSC12 Landrace CT|CT
265 WSC13 Landrace CT|CT
266 WSC16 Landrace N|N
267 WSC17 Landrace CT|CT
268 WSC18 Landrace CT|CT
269 WSC20 Landrace CT|CT
270 WSC24 Landrace CT|CT
271 WSC25 Landrace CT|CT
272 WSC29 Landrace CT|CT
273 WSC31 Landrace CT|CT
274 WSC32 Landrace CT|CT
275 WSC34 Landrace N|N
276 WSC38 Landrace CT|CT
277 WSC39 Improved N|N
278 WSC40 Landrace CT|CT
279 WSC54 Landrace CT|CT
280 WSC56 Landrace N|N
281 WSC59 Landrace CT|CT
282 WSC68 Landrace CT|CT
283 WSC70 Landrace N|N
284 WSC73 Landrace CT|CT
285 WSC81 Landrace CT|CT
286 WSC85 Improved N|N
287 WSC91 Landrace CT|CT
288 WSC93 Landrace CT|CT
289 WSC98 Landrace CT|CT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825599 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825599 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825599 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825599 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825599 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825599 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser