Variation ID : sbi33825620

Variation Detail



Variation ID sbi33825620
Type INDEL
Position Chr01 41482-41499
Ref /Alleles CAAGTGTAGAATAGTATT/ * or C
MAF *: 0.459
5' Flank TAGCAGTTTGGTGTAGAATAGTATTCTACA
3' Flank CTACACAAGTGTAGAATAGCACTTATATAT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
4 11 Improved N|N
5 110 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
6 123 Landrace N|N
7 131 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
8 132 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
9 135 Improved *|*
10 137 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
11 138 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
12 14 Improved N|N
13 140 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
14 141 Improved N|N
15 144 Improved *|*
16 150 Improved *|*
17 154 Improved *|*
18 159 Landrace N|N
19 16 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
20 161 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
21 167 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved N|N
25 175 Improved *|*
26 176 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
27 182 Landrace *|*
28 186 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
29 190 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
30 192 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
31 194 Improved N|N
32 195 Improved *|*
33 197 Improved *|*
34 J22 Landrace *|*
35 J26 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
36 J5 Landrace *|*
37 J50 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
38 2001 Landrace N|N
39 2005 Improved *|*
40 2008 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace *|*
44 2016 Improved *|*
45 2019 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
46 202 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
47 2021 Improved N|N
48 2023 Improved *|*
49 2026 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
50 2029 Improved *|*
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
58 2042 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
59 2043 Improved N|N
60 2048 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
61 2049 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
62 205 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
63 2050 Improved N|N
64 2052 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
65 2054 Improved N|N
66 2056 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
67 2059 Improved N|N
68 206 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
69 2064 Improved *|*
70 2065 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
71 2067 Improved *|*
72 2068 Improved N|N
73 2069 Improved N|N
74 2071 Improved N|N
75 2074 Improved N|N
76 2075 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
77 2076 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
78 2080 Improved N|N
79 2081 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
80 2082 Improved N|N
81 2086 Improved N|N
82 2088 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
83 260 Wild sorghum N|N
84 261 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
85 262 Improved N|N
86 263 Improved N|N
87 286 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
88 29 Improved *|*
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
92 32 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
93 34 Improved N|N
94 346 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
95 348 Wild sorghum *|*
96 353 Wild sorghum N|N
97 355 Wild sorghum *|*
98 357 Wild sorghum *|*
99 364 Wild sorghum *|*
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum *|*
106 394 Wild sorghum *|*
107 40 Improved N|N
108 42 Improved *|*
109 43 Improved *|*
110 45 Improved *|*
111 47 Improved N|N
112 48 Improved N|N
113 51 Improved *|*
114 53 Improved *|*
115 56 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
116 61 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
117 62 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
121 70 Improved N|N
122 73 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
123 75 Improved N|N
124 88 Improved *|*
125 89 Improved N|N
126 91 Improved *|*
127 92 Improved *|*
128 93 Improved N|N
129 94 Improved *|*
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved *|*
133 s1 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
134 s36 Wild sorghum *|*
135 s2 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
136 s3 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
137 s32 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
138 s43 Weedy CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
139 s40 Landrace N|N
140 s41 Weedy CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
141 s39 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
142 s42 Landrace *|*
143 s47 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
144 s5 Landrace *|*
145 GW102 Landrace N|N
146 GW103 Landrace *|*
147 GW104 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
148 GW105 Landrace *|*
149 GW16 Landrace N|N
150 GW2 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
151 GW34 Landrace C|C
152 GW37 Landrace *|*
153 GW58 Landrace *|*
154 GW59 Landrace *|*
155 GW9 Landrace *|*
156 s4 Weedy *|*
157 s6 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
158 s7 Landrace *|*
159 s8 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
160 s9 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
161 J101 Landrace N|N
162 J103 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
163 J112 Landrace *|*
164 J113 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
165 J129 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
166 J130 Improved N|N
167 J136 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
168 J152 Improved N|N
169 J2 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
170 J20 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
171 J4 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
172 J42 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
173 J44 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
174 J49 Landrace *|*
175 J52 Landrace N|N
176 J53 Landrace N|N
177 J54 Landrace *|*
178 J57 Landrace N|N
179 J59 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
180 J64 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
181 J66 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
182 J67 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
183 J69 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
184 J87 Landrace N|N
185 J99 Landrace N|N
186 s45 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
187 s11 Improved N|N
188 s10 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
189 s46 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
190 s12 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
191 s13 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
192 MHMD Landrace *|*
193 s14 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
194 s15 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
195 s34 Weedy *|*
196 s33 Wild sorghum *|*
197 s21 Wild sorghum CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
198 s16 Wild sorghum *|*
199 s44 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
200 s35 Landrace N|N
201 s31 Wild sorghum *|*
202 s17 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
203 s18 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
204 s20 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
205 s19 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
206 s22 Landrace *|*
207 s23 Landrace *|*
208 s24 Landrace *|*
209 s25 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
210 s26 Landrace *|*
211 s27 Landrace *|*
212 s28 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
213 s29 Landrace *|*
214 s30 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
215 SL25 Wild sorghum *|*
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum *|*
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum *|*
220 SL129 Wild sorghum *|*
221 SL130 Wild sorghum *|*
222 SL135 Wild sorghum CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum *|*
225 SL138 Wild sorghum CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
226 SL140 Wild sorghum *|*
227 SL141 Wild sorghum *|*
228 SL19 Wild sorghum *|*
229 SL28 Wild sorghum *|*
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum *|*
233 SL37 Wild sorghum *|*
234 SL39 Wild sorghum N|N
235 SL41 Wild sorghum *|*
236 SL43 Wild sorghum *|*
237 SL47 Wild sorghum CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
238 SL49 Wild sorghum *|*
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum *|*
241 SL62 Wild sorghum *|*
242 SL83 Wild sorghum N|N
243 SL97 Landrace *|*
244 s48 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
245 Tu13 Wild sorghum *|*
246 Tu14 Wild sorghum CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
247 Tu30 Wild sorghum *|*
248 Tu5 Wild sorghum *|*
249 WSC5 Landrace *|*
250 WSC15 Landrace *|*
251 WSC19 Landrace N|N
252 WSC30 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
253 WSC52 Landrace N|N
254 WSC6 Landrace *|*
255 WSC61 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
256 WSC71 Improved CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
257 WSC72 Landrace N|N
258 WSC79 Landrace N|N
259 WSC94 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
260 WSC99 Landrace *|*
261 WSC100 Landrace *|*
262 WSC104 Landrace N|N
263 WSC105 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
264 WSC12 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
265 WSC13 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
266 WSC16 Landrace *|*
267 WSC17 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
268 WSC18 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
269 WSC20 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
270 WSC24 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
271 WSC25 Landrace N|N
272 WSC29 Landrace *|*
273 WSC31 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
274 WSC32 Landrace *|*
275 WSC34 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
276 WSC38 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
277 WSC39 Improved *|*
278 WSC40 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
279 WSC54 Landrace *|*
280 WSC56 Landrace *|*
281 WSC59 Landrace N|N
282 WSC68 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
283 WSC70 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
284 WSC73 Landrace CAAGTGTAGAATAGTATT|CAAGTGTAGAATAGTATT
285 WSC81 Landrace *|*
286 WSC85 Improved N|N
287 WSC91 Landrace *|*
288 WSC93 Landrace *|*
289 WSC98 Landrace CAAGTGTAGAATAGTATT|*

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825620 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825620 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825620 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825620 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825620 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825620 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser