sorgsd

Variation ID : sbi33825627

Variation Detail

Variation ID	sbi33825627
Type	INDEL
Position	Chr01 41583-41584
Ref /Alleles	GA/ G
MAF	G: 0.004
5' Flank	CTGGACGATATGTATATAGACGAAATATAT
3' Flank	TCATAAACCATCTAGGTTGATATGTATATT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	GA\|GA
3	107	Improved	GA\|GA
4	11	Improved	N\|N
5	110	Improved	GA\|GA
6	123	Landrace	GA\|GA
7	131	Improved	GA\|GA
8	132	Improved	GA\|GA
9	135	Improved	GA\|GA
10	137	Improved	GA\|GA
11	138	Improved	GA\|GA
12	14	Improved	N\|N
13	140	Improved	N\|N
14	141	Improved	N\|N
15	144	Improved	GA\|GA
16	150	Improved	GA\|GA
17	154	Improved	GA\|GA
18	159	Landrace	N\|N
19	16	Improved	GA\|GA
20	161	Landrace	GA\|GA
21	167	Improved	GA\|GA
22	168	Improved	GA\|GA
23	170	Improved	N\|N
24	173	Improved	N\|N
25	175	Improved	GA\|GA
26	176	Improved	GA\|GA
27	182	Landrace	GA\|GA
28	186	Improved	GA\|GA
29	190	Improved	N\|N
30	192	Improved	GA\|GA
31	194	Improved	GA\|GA
32	195	Improved	GA\|GA
33	197	Improved	GA\|GA
34	J22	Landrace	GA\|GA
35	J26	Landrace	GA\|GA
36	J5	Landrace	GA\|GA
37	J50	Landrace	GA\|GA
38	2001	Landrace	GA\|GA
39	2005	Improved	GA\|GA
40	2008	Improved	GA\|GA
41	2009	Landrace	N\|N
42	201	Improved	GA\|GA
43	2010	Landrace	GA\|GA
44	2016	Improved	GA\|GA
45	2019	Improved	GA\|GA
46	202	Improved	GA\|GA
47	2021	Improved	N\|N
48	2023	Improved	GA\|GA
49	2026	Improved	GA\|GA
50	2029	Improved	GA\|GA
51	2030	Landrace	N\|N
52	2031	Landrace	GA\|GA
53	2036	Improved	GA\|GA
54	2037	Improved	GA\|GA
55	2038	Improved	GA\|GA
56	2039	Improved	GA\|GA
57	204	Improved	GA\|GA
58	2042	Improved	GA\|GA
59	2043	Improved	N\|N
60	2048	Improved	N\|N
61	2049	Improved	GA\|GA
62	205	Improved	GA\|GA
63	2050	Improved	N\|N
64	2052	Improved	GA\|GA
65	2054	Improved	GA\|GA
66	2056	Improved	GA\|GA
67	2059	Improved	N\|N
68	206	Improved	GA\|GA
69	2064	Improved	GA\|GA
70	2065	Improved	GA\|GA
71	2067	Improved	GA\|GA
72	2068	Improved	GA\|GA
73	2069	Improved	N\|N
74	2071	Improved	GA\|GA
75	2074	Improved	GA\|GA
76	2075	Improved	GA\|GA
77	2076	Improved	GA\|GA
78	2080	Improved	N\|N
79	2081	Improved	GA\|GA
80	2082	Improved	GA\|GA
81	2086	Improved	GA\|GA
82	2088	Improved	GA\|GA
83	260	Wild sorghum	N\|N
84	261	Improved	GA\|GA
85	262	Improved	N\|N
86	263	Improved	GA\|GA
87	286	Improved	GA\|GA
88	29	Improved	GA\|GA
89	3	Improved	N\|N
90	302546	S.propinquum	GA\|GA
91	31	Improved	GA\|GA
92	32	Improved	GA\|GA
93	34	Improved	N\|N
94	346	Landrace	GA\|GA
95	348	Wild sorghum	GA\|GA
96	353	Wild sorghum	GA\|GA
97	355	Wild sorghum	GA\|GA
98	357	Wild sorghum	GA\|GA
99	364	Wild sorghum	GA\|GA
100	367	Landrace	N\|N
101	s37	S.propinquum	GA\|GA
102	s38	S.propinquum	GA\|GA
103	370	Landrace	GA\|GA
104	377	Wild sorghum	GA\|GA
105	392	Wild sorghum	GA\|GA
106	394	Wild sorghum	GA\|GA
107	40	Improved	GA\|GA
108	42	Improved	GA\|GA
109	43	Improved	GA\|GA
110	45	Improved	GA\|GA
111	47	Improved	GA\|GA
112	48	Improved	GA\|GA
113	51	Improved	GA\|GA
114	53	Improved	GA\|GA
115	56	Improved	GA\|GA
116	61	Improved	GA\|GA
117	62	Improved	GA\|GA
118	66	Landrace	GA\|GA
119	67	Improved	N\|N
120	68	Improved	GA\|GA
121	70	Improved	GA\|GA
122	73	Improved	GA\|GA
123	75	Improved	N\|N
124	88	Improved	GA\|GA
125	89	Improved	GA\|GA
126	91	Improved	N\|N
127	92	Improved	GA\|GA
128	93	Improved	N\|N
129	94	Improved	GA\|GA
130	95	Improved	N\|N
131	96	Improved	GA\|GA
132	97	Improved	GA\|GA
133	s1	Improved	GA\|GA
134	s36	Wild sorghum	GA\|GA
135	s2	Landrace	GA\|GA
136	s3	Improved	GA\|GA
137	s32	Improved	GA\|GA
138	s43	Weedy	GA\|GA
139	s40	Landrace	GA\|GA
140	s41	Weedy	GA\|GA
141	s39	Landrace	GA\|GA
142	s42	Landrace	GA\|GA
143	s47	Improved	GA\|GA
144	s5	Landrace	GA\|GA
145	GW102	Landrace	GA\|GA
146	GW103	Landrace	GA\|GA
147	GW104	Landrace	GA\|GA
148	GW105	Landrace	GA\|GA
149	GW16	Landrace	GA\|GA
150	GW2	Landrace	GA\|GA
151	GW34	Landrace	GA\|GA
152	GW37	Landrace	GA\|GA
153	GW58	Landrace	GA\|GA
154	GW59	Landrace	GA\|GA
155	GW9	Landrace	GA\|GA
156	s4	Weedy	GA\|GA
157	s6	Improved	GA\|GA
158	s7	Landrace	GA\|GA
159	s8	Landrace	GA\|GA
160	s9	Landrace	GA\|GA
161	J101	Landrace	N\|N
162	J103	Improved	GA\|GA
163	J112	Landrace	GA\|GA
164	J113	Improved	GA\|GA
165	J129	Improved	GA\|GA
166	J130	Improved	GA\|GA
167	J136	Improved	GA\|GA
168	J152	Improved	N\|N
169	J2	Landrace	GA\|GA
170	J20	Landrace	GA\|GA
171	J4	Landrace	GA\|GA
172	J42	Landrace	N\|N
173	J44	Landrace	GA\|GA
174	J49	Landrace	GA\|GA
175	J52	Landrace	N\|N
176	J53	Landrace	GA\|GA
177	J54	Landrace	GA\|GA
178	J57	Landrace	N\|N
179	J59	Landrace	GA\|GA
180	J64	Landrace	GA\|GA
181	J66	Landrace	GA\|GA
182	J67	Landrace	GA\|GA
183	J69	Landrace	GA\|GA
184	J87	Landrace	GA\|GA
185	J99	Landrace	N\|N
186	s45	Landrace	N\|N
187	s11	Improved	GA\|GA
188	s10	Improved	GA\|GA
189	s46	Improved	N\|N
190	s12	Improved	GA\|GA
191	s13	Landrace	GA\|GA
192	MHMD	Landrace	GA\|GA
193	s14	Improved	GA\|GA
194	s15	Improved	GA\|GA
195	s34	Weedy	GA\|GA
196	s33	Wild sorghum	GA\|GA
197	s21	Wild sorghum	GA\|GA
198	s16	Wild sorghum	GA\|GA
199	s44	Improved	GA\|GA
200	s35	Landrace	GA\|GA
201	s31	Wild sorghum	GA\|GA
202	s17	Improved	GA\|GA
203	s18	Improved	GA\|GA
204	s20	Improved	GA\|GA
205	s19	Improved	GA\|GA
206	s22	Landrace	GA\|GA
207	s23	Landrace	GA\|GA
208	s24	Landrace	GA\|GA
209	s25	Landrace	GA\|GA
210	s26	Landrace	GA\|GA
211	s27	Landrace	GA\|GA
212	s28	Landrace	GA\|GA
213	s29	Landrace	G\|G
214	s30	Landrace	GA\|GA
215	SL25	Wild sorghum	GA\|GA
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	GA\|GA
218	SL109	Wild sorghum	GA\|GA
219	SL12	Wild sorghum	GA\|GA
220	SL129	Wild sorghum	GA\|GA
221	SL130	Wild sorghum	GA\|GA
222	SL135	Wild sorghum	GA\|GA
223	SL136	Wild sorghum	GA\|GA
224	SL137	Wild sorghum	GA\|GA
225	SL138	Wild sorghum	GA\|GA
226	SL140	Wild sorghum	GA\|GA
227	SL141	Wild sorghum	GA\|GA
228	SL19	Wild sorghum	GA\|GA
229	SL28	Wild sorghum	GA\|GA
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	GA\|GA
233	SL37	Wild sorghum	GA\|GA
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	GA\|GA
236	SL43	Wild sorghum	GA\|GA
237	SL47	Wild sorghum	GA\|GA
238	SL49	Wild sorghum	GA\|GA
239	SL51	Wild sorghum	GA\|GA
240	SL53	Wild sorghum	GA\|GA
241	SL62	Wild sorghum	GA\|GA
242	SL83	Wild sorghum	GA\|GA
243	SL97	Landrace	GA\|GA
244	s48	Improved	GA\|GA
245	Tu13	Wild sorghum	GA\|GA
246	Tu14	Wild sorghum	GA\|GA
247	Tu30	Wild sorghum	GA\|GA
248	Tu5	Wild sorghum	GA\|GA
249	WSC5	Landrace	GA\|GA
250	WSC15	Landrace	GA\|GA
251	WSC19	Landrace	N\|N
252	WSC30	Landrace	GA\|GA
253	WSC52	Landrace	GA\|GA
254	WSC6	Landrace	GA\|GA
255	WSC61	Landrace	GA\|GA
256	WSC71	Improved	GA\|GA
257	WSC72	Landrace	GA\|GA
258	WSC79	Landrace	GA\|GA
259	WSC94	Landrace	GA\|GA
260	WSC99	Landrace	GA\|GA
261	WSC100	Landrace	GA\|GA
262	WSC104	Landrace	N\|N
263	WSC105	Landrace	GA\|GA
264	WSC12	Landrace	GA\|GA
265	WSC13	Landrace	GA\|GA
266	WSC16	Landrace	GA\|GA
267	WSC17	Landrace	GA\|GA
268	WSC18	Landrace	GA\|GA
269	WSC20	Landrace	GA\|GA
270	WSC24	Landrace	GA\|GA
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	GA\|GA
273	WSC31	Landrace	GA\|GA
274	WSC32	Landrace	GA\|GA
275	WSC34	Landrace	GA\|GA
276	WSC38	Landrace	GA\|GA
277	WSC39	Improved	GA\|GA
278	WSC40	Landrace	GA\|GA
279	WSC54	Landrace	GA\|GA
280	WSC56	Landrace	GA\|GA
281	WSC59	Landrace	GA\|GA
282	WSC68	Landrace	GA\|GA
283	WSC70	Landrace	GA\|GA
284	WSC73	Landrace	GA\|GA
285	WSC81	Landrace	GA\|GA
286	WSC85	Improved	GA\|GA
287	WSC91	Landrace	GA\|GA
288	WSC93	Landrace	GA\|GA
289	WSC98	Landrace	GA\|GA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825627	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825627	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825627	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825627	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825627	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825627	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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