sorgsd

Variation ID : sbi33825660

Variation Detail

Variation ID	sbi33825660
Type	INDEL
Position	Chr01 43150-43154
Ref /Alleles	TAAAC/ T
MAF	T: 0.004
5' Flank	CAATACCGAAATCCGAAATTTTTTCGGAAC
3' Flank	AAGGCCTAACATTAGTTAAGTAAAAGATCG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	TAAAC\|TAAAC
3	107	Improved	TAAAC\|TAAAC
4	11	Improved	TAAAC\|TAAAC
5	110	Improved	TAAAC\|TAAAC
6	123	Landrace	N\|N
7	131	Improved	TAAAC\|TAAAC
8	132	Improved	TAAAC\|TAAAC
9	135	Improved	TAAAC\|TAAAC
10	137	Improved	TAAAC\|TAAAC
11	138	Improved	TAAAC\|TAAAC
12	14	Improved	TAAAC\|TAAAC
13	140	Improved	TAAAC\|TAAAC
14	141	Improved	N\|N
15	144	Improved	N\|N
16	150	Improved	N\|N
17	154	Improved	TAAAC\|TAAAC
18	159	Landrace	TAAAC\|TAAAC
19	16	Improved	TAAAC\|TAAAC
20	161	Landrace	TAAAC\|TAAAC
21	167	Improved	TAAAC\|TAAAC
22	168	Improved	TAAAC\|TAAAC
23	170	Improved	TAAAC\|TAAAC
24	173	Improved	TAAAC\|TAAAC
25	175	Improved	TAAAC\|TAAAC
26	176	Improved	TAAAC\|TAAAC
27	182	Landrace	TAAAC\|TAAAC
28	186	Improved	TAAAC\|TAAAC
29	190	Improved	TAAAC\|TAAAC
30	192	Improved	TAAAC\|TAAAC
31	194	Improved	TAAAC\|TAAAC
32	195	Improved	TAAAC\|TAAAC
33	197	Improved	TAAAC\|TAAAC
34	J22	Landrace	TAAAC\|TAAAC
35	J26	Landrace	TAAAC\|TAAAC
36	J5	Landrace	TAAAC\|TAAAC
37	J50	Landrace	TAAAC\|TAAAC
38	2001	Landrace	TAAAC\|TAAAC
39	2005	Improved	TAAAC\|TAAAC
40	2008	Improved	TAAAC\|TAAAC
41	2009	Landrace	N\|N
42	201	Improved	N\|N
43	2010	Landrace	N\|N
44	2016	Improved	TAAAC\|TAAAC
45	2019	Improved	TAAAC\|TAAAC
46	202	Improved	TAAAC\|TAAAC
47	2021	Improved	TAAAC\|TAAAC
48	2023	Improved	TAAAC\|TAAAC
49	2026	Improved	TAAAC\|TAAAC
50	2029	Improved	TAAAC\|TAAAC
51	2030	Landrace	N\|N
52	2031	Landrace	TAAAC\|TAAAC
53	2036	Improved	TAAAC\|TAAAC
54	2037	Improved	N\|N
55	2038	Improved	N\|N
56	2039	Improved	TAAAC\|TAAAC
57	204	Improved	TAAAC\|TAAAC
58	2042	Improved	TAAAC\|TAAAC
59	2043	Improved	TAAAC\|TAAAC
60	2048	Improved	TAAAC\|TAAAC
61	2049	Improved	TAAAC\|TAAAC
62	205	Improved	TAAAC\|TAAAC
63	2050	Improved	TAAAC\|TAAAC
64	2052	Improved	TAAAC\|TAAAC
65	2054	Improved	TAAAC\|TAAAC
66	2056	Improved	TAAAC\|TAAAC
67	2059	Improved	TAAAC\|TAAAC
68	206	Improved	TAAAC\|TAAAC
69	2064	Improved	TAAAC\|TAAAC
70	2065	Improved	TAAAC\|TAAAC
71	2067	Improved	TAAAC\|TAAAC
72	2068	Improved	TAAAC\|TAAAC
73	2069	Improved	TAAAC\|TAAAC
74	2071	Improved	N\|N
75	2074	Improved	TAAAC\|TAAAC
76	2075	Improved	TAAAC\|TAAAC
77	2076	Improved	TAAAC\|TAAAC
78	2080	Improved	TAAAC\|TAAAC
79	2081	Improved	TAAAC\|TAAAC
80	2082	Improved	TAAAC\|TAAAC
81	2086	Improved	TAAAC\|TAAAC
82	2088	Improved	TAAAC\|TAAAC
83	260	Wild sorghum	TAAAC\|TAAAC
84	261	Improved	TAAAC\|TAAAC
85	262	Improved	TAAAC\|TAAAC
86	263	Improved	TAAAC\|TAAAC
87	286	Improved	TAAAC\|TAAAC
88	29	Improved	TAAAC\|TAAAC
89	3	Improved	TAAAC\|TAAAC
90	302546	S.propinquum	N\|N
91	31	Improved	TAAAC\|TAAAC
92	32	Improved	TAAAC\|TAAAC
93	34	Improved	TAAAC\|TAAAC
94	346	Landrace	N\|N
95	348	Wild sorghum	TAAAC\|TAAAC
96	353	Wild sorghum	TAAAC\|TAAAC
97	355	Wild sorghum	TAAAC\|TAAAC
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	TAAAC\|TAAAC
100	367	Landrace	TAAAC\|TAAAC
101	s37	S.propinquum	N\|N
102	s38	S.propinquum	N\|N
103	370	Landrace	N\|N
104	377	Wild sorghum	TAAAC\|TAAAC
105	392	Wild sorghum	TAAAC\|TAAAC
106	394	Wild sorghum	TAAAC\|TAAAC
107	40	Improved	N\|N
108	42	Improved	N\|N
109	43	Improved	TAAAC\|TAAAC
110	45	Improved	TAAAC\|TAAAC
111	47	Improved	TAAAC\|TAAAC
112	48	Improved	TAAAC\|TAAAC
113	51	Improved	N\|N
114	53	Improved	N\|N
115	56	Improved	TAAAC\|TAAAC
116	61	Improved	TAAAC\|TAAAC
117	62	Improved	TAAAC\|TAAAC
118	66	Landrace	N\|N
119	67	Improved	TAAAC\|TAAAC
120	68	Improved	TAAAC\|TAAAC
121	70	Improved	TAAAC\|TAAAC
122	73	Improved	TAAAC\|TAAAC
123	75	Improved	TAAAC\|TAAAC
124	88	Improved	N\|N
125	89	Improved	TAAAC\|TAAAC
126	91	Improved	TAAAC\|TAAAC
127	92	Improved	N\|N
128	93	Improved	TAAAC\|TAAAC
129	94	Improved	TAAAC\|TAAAC
130	95	Improved	N\|N
131	96	Improved	TAAAC\|TAAAC
132	97	Improved	N\|N
133	s1	Improved	TAAAC\|TAAAC
134	s36	Wild sorghum	TAAAC\|TAAAC
135	s2	Landrace	TAAAC\|TAAAC
136	s3	Improved	TAAAC\|TAAAC
137	s32	Improved	TAAAC\|TAAAC
138	s43	Weedy	TAAAC\|TAAAC
139	s40	Landrace	TAAAC\|TAAAC
140	s41	Weedy	TAAAC\|TAAAC
141	s39	Landrace	TAAAC\|TAAAC
142	s42	Landrace	TAAAC\|TAAAC
143	s47	Improved	TAAAC\|TAAAC
144	s5	Landrace	TAAAC\|TAAAC
145	GW102	Landrace	TAAAC\|TAAAC
146	GW103	Landrace	TAAAC\|TAAAC
147	GW104	Landrace	TAAAC\|TAAAC
148	GW105	Landrace	TAAAC\|TAAAC
149	GW16	Landrace	TAAAC\|TAAAC
150	GW2	Landrace	TAAAC\|TAAAC
151	GW34	Landrace	TAAAC\|TAAAC
152	GW37	Landrace	TAAAC\|TAAAC
153	GW58	Landrace	TAAAC\|TAAAC
154	GW59	Landrace	TAAAC\|TAAAC
155	GW9	Landrace	TAAAC\|TAAAC
156	s4	Weedy	TAAAC\|TAAAC
157	s6	Improved	TAAAC\|TAAAC
158	s7	Landrace	TAAAC\|TAAAC
159	s8	Landrace	TAAAC\|TAAAC
160	s9	Landrace	TAAAC\|TAAAC
161	J101	Landrace	TAAAC\|TAAAC
162	J103	Improved	TAAAC\|TAAAC
163	J112	Landrace	TAAAC\|TAAAC
164	J113	Improved	TAAAC\|TAAAC
165	J129	Improved	TAAAC\|TAAAC
166	J130	Improved	TAAAC\|TAAAC
167	J136	Improved	TAAAC\|TAAAC
168	J152	Improved	TAAAC\|TAAAC
169	J2	Landrace	TAAAC\|TAAAC
170	J20	Landrace	TAAAC\|TAAAC
171	J4	Landrace	TAAAC\|TAAAC
172	J42	Landrace	TAAAC\|TAAAC
173	J44	Landrace	TAAAC\|TAAAC
174	J49	Landrace	TAAAC\|TAAAC
175	J52	Landrace	TAAAC\|TAAAC
176	J53	Landrace	TAAAC\|TAAAC
177	J54	Landrace	TAAAC\|TAAAC
178	J57	Landrace	TAAAC\|TAAAC
179	J59	Landrace	TAAAC\|TAAAC
180	J64	Landrace	TAAAC\|TAAAC
181	J66	Landrace	TAAAC\|TAAAC
182	J67	Landrace	TAAAC\|TAAAC
183	J69	Landrace	TAAAC\|TAAAC
184	J87	Landrace	N\|N
185	J99	Landrace	TAAAC\|TAAAC
186	s45	Landrace	N\|N
187	s11	Improved	TAAAC\|TAAAC
188	s10	Improved	TAAAC\|TAAAC
189	s46	Improved	TAAAC\|TAAAC
190	s12	Improved	TAAAC\|TAAAC
191	s13	Landrace	TAAAC\|TAAAC
192	MHMD	Landrace	N\|N
193	s14	Improved	TAAAC\|TAAAC
194	s15	Improved	TAAAC\|TAAAC
195	s34	Weedy	TAAAC\|TAAAC
196	s33	Wild sorghum	TAAAC\|TAAAC
197	s21	Wild sorghum	TAAAC\|TAAAC
198	s16	Wild sorghum	TAAAC\|TAAAC
199	s44	Improved	TAAAC\|TAAAC
200	s35	Landrace	TAAAC\|TAAAC
201	s31	Wild sorghum	TAAAC\|TAAAC
202	s17	Improved	TAAAC\|TAAAC
203	s18	Improved	TAAAC\|TAAAC
204	s20	Improved	TAAAC\|TAAAC
205	s19	Improved	TAAAC\|TAAAC
206	s22	Landrace	TAAAC\|TAAAC
207	s23	Landrace	TAAAC\|TAAAC
208	s24	Landrace	TAAAC\|TAAAC
209	s25	Landrace	TAAAC\|TAAAC
210	s26	Landrace	TAAAC\|TAAAC
211	s27	Landrace	TAAAC\|TAAAC
212	s28	Landrace	TAAAC\|TAAAC
213	s29	Landrace	TAAAC\|TAAAC
214	s30	Landrace	TAAAC\|TAAAC
215	SL25	Wild sorghum	TAAAC\|TAAAC
216	SL105	Wild sorghum	TAAAC\|TAAAC
217	SL108	Wild sorghum	TAAAC\|TAAAC
218	SL109	Wild sorghum	TAAAC\|TAAAC
219	SL12	Wild sorghum	TAAAC\|TAAAC
220	SL129	Wild sorghum	TAAAC\|TAAAC
221	SL130	Wild sorghum	TAAAC\|TAAAC
222	SL135	Wild sorghum	TAAAC\|TAAAC
223	SL136	Wild sorghum	TAAAC\|TAAAC
224	SL137	Wild sorghum	TAAAC\|TAAAC
225	SL138	Wild sorghum	TAAAC\|TAAAC
226	SL140	Wild sorghum	TAAAC\|TAAAC
227	SL141	Wild sorghum	TAAAC\|TAAAC
228	SL19	Wild sorghum	TAAAC\|TAAAC
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	TAAAC\|TAAAC
232	SL36	Wild sorghum	TAAAC\|TAAAC
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	TAAAC\|TAAAC
235	SL41	Wild sorghum	N\|N
236	SL43	Wild sorghum	TAAAC\|TAAAC
237	SL47	Wild sorghum	TAAAC\|TAAAC
238	SL49	Wild sorghum	TAAAC\|TAAAC
239	SL51	Wild sorghum	TAAAC\|TAAAC
240	SL53	Wild sorghum	TAAAC\|TAAAC
241	SL62	Wild sorghum	T\|T
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	TAAAC\|TAAAC
244	s48	Improved	TAAAC\|TAAAC
245	Tu13	Wild sorghum	TAAAC\|TAAAC
246	Tu14	Wild sorghum	TAAAC\|TAAAC
247	Tu30	Wild sorghum	TAAAC\|TAAAC
248	Tu5	Wild sorghum	TAAAC\|TAAAC
249	WSC5	Landrace	TAAAC\|TAAAC
250	WSC15	Landrace	TAAAC\|TAAAC
251	WSC19	Landrace	TAAAC\|TAAAC
252	WSC30	Landrace	TAAAC\|TAAAC
253	WSC52	Landrace	TAAAC\|TAAAC
254	WSC6	Landrace	TAAAC\|TAAAC
255	WSC61	Landrace	TAAAC\|TAAAC
256	WSC71	Improved	TAAAC\|TAAAC
257	WSC72	Landrace	TAAAC\|TAAAC
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	TAAAC\|TAAAC
260	WSC99	Landrace	N\|N
261	WSC100	Landrace	TAAAC\|TAAAC
262	WSC104	Landrace	TAAAC\|TAAAC
263	WSC105	Landrace	TAAAC\|TAAAC
264	WSC12	Landrace	TAAAC\|TAAAC
265	WSC13	Landrace	TAAAC\|TAAAC
266	WSC16	Landrace	TAAAC\|TAAAC
267	WSC17	Landrace	TAAAC\|TAAAC
268	WSC18	Landrace	TAAAC\|TAAAC
269	WSC20	Landrace	TAAAC\|TAAAC
270	WSC24	Landrace	TAAAC\|TAAAC
271	WSC25	Landrace	TAAAC\|TAAAC
272	WSC29	Landrace	TAAAC\|TAAAC
273	WSC31	Landrace	TAAAC\|TAAAC
274	WSC32	Landrace	TAAAC\|TAAAC
275	WSC34	Landrace	TAAAC\|TAAAC
276	WSC38	Landrace	TAAAC\|TAAAC
277	WSC39	Improved	TAAAC\|TAAAC
278	WSC40	Landrace	TAAAC\|TAAAC
279	WSC54	Landrace	TAAAC\|TAAAC
280	WSC56	Landrace	TAAAC\|TAAAC
281	WSC59	Landrace	TAAAC\|TAAAC
282	WSC68	Landrace	TAAAC\|TAAAC
283	WSC70	Landrace	TAAAC\|TAAAC
284	WSC73	Landrace	TAAAC\|TAAAC
285	WSC81	Landrace	N\|N
286	WSC85	Improved	N\|N
287	WSC91	Landrace	N\|N
288	WSC93	Landrace	TAAAC\|TAAAC
289	WSC98	Landrace	TAAAC\|TAAAC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825660	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825660	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825660	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

Genome Browser