Variation ID : sbi33825668

Variation Detail



Variation ID sbi33825668
Type INDEL
Position Chr01 43714-43715
Ref /Alleles GC/ G
MAF G: 0.008
5' Flank CTTAAAATGATACCATAGATATTCACTACG
3' Flank CCAACGGGACACTGGTACTTTGCCGAGTGT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved GC|GC
3 107 Improved GC|GC
4 11 Improved N|N
5 110 Improved GC|GC
6 123 Landrace GC|GC
7 131 Improved GC|GC
8 132 Improved GC|GC
9 135 Improved GC|GC
10 137 Improved GC|GC
11 138 Improved GC|GC
12 14 Improved GC|GC
13 140 Improved GC|GC
14 141 Improved GC|GC
15 144 Improved GC|GC
16 150 Improved GC|GC
17 154 Improved GC|GC
18 159 Landrace GC|GC
19 16 Improved GC|GC
20 161 Landrace N|N
21 167 Improved GC|GC
22 168 Improved GC|GC
23 170 Improved N|N
24 173 Improved GC|GC
25 175 Improved GC|GC
26 176 Improved GC|GC
27 182 Landrace GC|GC
28 186 Improved GC|GC
29 190 Improved GC|GC
30 192 Improved GC|GC
31 194 Improved GC|GC
32 195 Improved GC|GC
33 197 Improved N|N
34 J22 Landrace GC|GC
35 J26 Landrace GC|GC
36 J5 Landrace GC|GC
37 J50 Landrace GC|GC
38 2001 Landrace GC|GC
39 2005 Improved N|N
40 2008 Improved N|N
41 2009 Landrace GC|GC
42 201 Improved GC|GC
43 2010 Landrace GC|GC
44 2016 Improved GC|GC
45 2019 Improved GC|GC
46 202 Improved GC|GC
47 2021 Improved GC|GC
48 2023 Improved GC|GC
49 2026 Improved GC|GC
50 2029 Improved GC|GC
51 2030 Landrace GC|GC
52 2031 Landrace GC|GC
53 2036 Improved GC|GC
54 2037 Improved GC|GC
55 2038 Improved N|N
56 2039 Improved GC|GC
57 204 Improved GC|GC
58 2042 Improved GC|GC
59 2043 Improved GC|GC
60 2048 Improved GC|GC
61 2049 Improved GC|GC
62 205 Improved GC|GC
63 2050 Improved GC|GC
64 2052 Improved GC|GC
65 2054 Improved GC|GC
66 2056 Improved N|N
67 2059 Improved GC|GC
68 206 Improved GC|GC
69 2064 Improved GC|GC
70 2065 Improved GC|GC
71 2067 Improved GC|GC
72 2068 Improved GC|GC
73 2069 Improved GC|GC
74 2071 Improved GC|GC
75 2074 Improved N|N
76 2075 Improved GC|GC
77 2076 Improved GC|GC
78 2080 Improved GC|GC
79 2081 Improved GC|GC
80 2082 Improved GC|GC
81 2086 Improved N|N
82 2088 Improved GC|GC
83 260 Wild sorghum GC|GC
84 261 Improved GC|GC
85 262 Improved N|N
86 263 Improved GC|GC
87 286 Improved GC|GC
88 29 Improved GC|GC
89 3 Improved GC|GC
90 302546 S.propinquum N|N
91 31 Improved GC|GC
92 32 Improved GC|GC
93 34 Improved GC|GC
94 346 Landrace GC|GC
95 348 Wild sorghum GC|GC
96 353 Wild sorghum GC|GC
97 355 Wild sorghum GC|GC
98 357 Wild sorghum N|N
99 364 Wild sorghum GC|GC
100 367 Landrace GC|GC
101 s37 S.propinquum G|G
102 s38 S.propinquum G|G
103 370 Landrace GC|GC
104 377 Wild sorghum GC|GC
105 392 Wild sorghum GC|GC
106 394 Wild sorghum GC|GC
107 40 Improved GC|GC
108 42 Improved N|N
109 43 Improved GC|GC
110 45 Improved GC|GC
111 47 Improved GC|GC
112 48 Improved GC|GC
113 51 Improved GC|GC
114 53 Improved GC|GC
115 56 Improved GC|GC
116 61 Improved GC|GC
117 62 Improved GC|GC
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved GC|GC
121 70 Improved GC|GC
122 73 Improved GC|GC
123 75 Improved GC|GC
124 88 Improved GC|GC
125 89 Improved GC|GC
126 91 Improved GC|GC
127 92 Improved GC|GC
128 93 Improved GC|GC
129 94 Improved GC|GC
130 95 Improved GC|GC
131 96 Improved GC|GC
132 97 Improved GC|GC
133 s1 Improved GC|GC
134 s36 Wild sorghum GC|GC
135 s2 Landrace GC|GC
136 s3 Improved GC|GC
137 s32 Improved GC|GC
138 s43 Weedy GC|GC
139 s40 Landrace GC|GC
140 s41 Weedy GC|GC
141 s39 Landrace GC|GC
142 s42 Landrace GC|GC
143 s47 Improved GC|GC
144 s5 Landrace GC|GC
145 GW102 Landrace GC|GC
146 GW103 Landrace GC|GC
147 GW104 Landrace GC|GC
148 GW105 Landrace GC|GC
149 GW16 Landrace GC|GC
150 GW2 Landrace GC|GC
151 GW34 Landrace GC|GC
152 GW37 Landrace GC|GC
153 GW58 Landrace GC|GC
154 GW59 Landrace GC|GC
155 GW9 Landrace GC|GC
156 s4 Weedy GC|GC
157 s6 Improved GC|GC
158 s7 Landrace GC|GC
159 s8 Landrace GC|GC
160 s9 Landrace GC|GC
161 J101 Landrace GC|GC
162 J103 Improved GC|GC
163 J112 Landrace GC|GC
164 J113 Improved GC|GC
165 J129 Improved GC|GC
166 J130 Improved GC|GC
167 J136 Improved GC|GC
168 J152 Improved GC|GC
169 J2 Landrace GC|GC
170 J20 Landrace GC|GC
171 J4 Landrace GC|GC
172 J42 Landrace GC|GC
173 J44 Landrace GC|GC
174 J49 Landrace N|N
175 J52 Landrace GC|GC
176 J53 Landrace N|N
177 J54 Landrace GC|GC
178 J57 Landrace N|N
179 J59 Landrace N|N
180 J64 Landrace GC|GC
181 J66 Landrace GC|GC
182 J67 Landrace GC|GC
183 J69 Landrace GC|GC
184 J87 Landrace GC|GC
185 J99 Landrace GC|GC
186 s45 Landrace GC|GC
187 s11 Improved GC|GC
188 s10 Improved GC|GC
189 s46 Improved GC|GC
190 s12 Improved GC|GC
191 s13 Landrace GC|GC
192 MHMD Landrace GC|GC
193 s14 Improved GC|GC
194 s15 Improved GC|GC
195 s34 Weedy GC|GC
196 s33 Wild sorghum GC|GC
197 s21 Wild sorghum GC|GC
198 s16 Wild sorghum GC|GC
199 s44 Improved GC|GC
200 s35 Landrace GC|GC
201 s31 Wild sorghum GC|GC
202 s17 Improved GC|GC
203 s18 Improved GC|GC
204 s20 Improved GC|GC
205 s19 Improved GC|GC
206 s22 Landrace GC|GC
207 s23 Landrace GC|GC
208 s24 Landrace GC|GC
209 s25 Landrace GC|GC
210 s26 Landrace GC|GC
211 s27 Landrace GC|GC
212 s28 Landrace GC|GC
213 s29 Landrace GC|GC
214 s30 Landrace GC|GC
215 SL25 Wild sorghum N|N
216 SL105 Wild sorghum GC|GC
217 SL108 Wild sorghum GC|GC
218 SL109 Wild sorghum GC|GC
219 SL12 Wild sorghum GC|GC
220 SL129 Wild sorghum GC|GC
221 SL130 Wild sorghum GC|GC
222 SL135 Wild sorghum GC|GC
223 SL136 Wild sorghum GC|GC
224 SL137 Wild sorghum GC|GC
225 SL138 Wild sorghum GC|GC
226 SL140 Wild sorghum GC|GC
227 SL141 Wild sorghum GC|GC
228 SL19 Wild sorghum GC|GC
229 SL28 Wild sorghum GC|GC
230 SL32 Wild sorghum GC|GC
231 SL35 Wild sorghum GC|GC
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum GC|GC
234 SL39 Wild sorghum GC|GC
235 SL41 Wild sorghum GC|GC
236 SL43 Wild sorghum GC|GC
237 SL47 Wild sorghum GC|GC
238 SL49 Wild sorghum GC|GC
239 SL51 Wild sorghum GC|GC
240 SL53 Wild sorghum GC|GC
241 SL62 Wild sorghum N|N
242 SL83 Wild sorghum N|N
243 SL97 Landrace GC|GC
244 s48 Improved GC|GC
245 Tu13 Wild sorghum GC|GC
246 Tu14 Wild sorghum GC|GC
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum GC|GC
249 WSC5 Landrace GC|GC
250 WSC15 Landrace GC|GC
251 WSC19 Landrace GC|GC
252 WSC30 Landrace N|N
253 WSC52 Landrace N|N
254 WSC6 Landrace GC|GC
255 WSC61 Landrace GC|GC
256 WSC71 Improved GC|GC
257 WSC72 Landrace GC|GC
258 WSC79 Landrace GC|GC
259 WSC94 Landrace GC|GC
260 WSC99 Landrace GC|GC
261 WSC100 Landrace GC|GC
262 WSC104 Landrace GC|GC
263 WSC105 Landrace GC|GC
264 WSC12 Landrace GC|GC
265 WSC13 Landrace GC|GC
266 WSC16 Landrace GC|GC
267 WSC17 Landrace GC|GC
268 WSC18 Landrace GC|GC
269 WSC20 Landrace GC|GC
270 WSC24 Landrace GC|GC
271 WSC25 Landrace GC|GC
272 WSC29 Landrace N|N
273 WSC31 Landrace GC|GC
274 WSC32 Landrace GC|GC
275 WSC34 Landrace GC|GC
276 WSC38 Landrace N|N
277 WSC39 Improved GC|GC
278 WSC40 Landrace GC|GC
279 WSC54 Landrace GC|GC
280 WSC56 Landrace GC|GC
281 WSC59 Landrace GC|GC
282 WSC68 Landrace GC|GC
283 WSC70 Landrace GC|GC
284 WSC73 Landrace GC|GC
285 WSC81 Landrace GC|GC
286 WSC85 Improved GC|GC
287 WSC91 Landrace GC|GC
288 WSC93 Landrace GC|GC
289 WSC98 Landrace GC|GC

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825668 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825668 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825668 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p

Genome Browser