Variation ID : sbi33825679

Variation Detail



Variation ID sbi33825679
Type INDEL
Position Chr01 45699-45701
Ref /Alleles CAT/ C
MAF C: 0.041
5' Flank GCATGAAAACATCATTCATGGAAACCACTA
3' Flank ATATATTTTTTGGATTCACTAATTAAAGAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved CAT|CAT
2 103 Improved CAT|CAT
3 107 Improved C|C
4 11 Improved CAT|CAT
5 110 Improved CAT|CAT
6 123 Landrace N|N
7 131 Improved CAT|CAT
8 132 Improved CAT|CAT
9 135 Improved CAT|CAT
10 137 Improved CAT|CAT
11 138 Improved CAT|CAT
12 14 Improved CAT|CAT
13 140 Improved CAT|CAT
14 141 Improved CAT|CAT
15 144 Improved CAT|CAT
16 150 Improved CAT|CAT
17 154 Improved CAT|CAT
18 159 Landrace N|N
19 16 Improved CAT|CAT
20 161 Landrace CAT|CAT
21 167 Improved CAT|CAT
22 168 Improved CAT|CAT
23 170 Improved N|N
24 173 Improved CAT|CAT
25 175 Improved CAT|CAT
26 176 Improved CAT|CAT
27 182 Landrace CAT|CAT
28 186 Improved CAT|CAT
29 190 Improved CAT|CAT
30 192 Improved CAT|CAT
31 194 Improved N|N
32 195 Improved CAT|CAT
33 197 Improved CAT|CAT
34 J22 Landrace CAT|CAT
35 J26 Landrace CAT|CAT
36 J5 Landrace CAT|CAT
37 J50 Landrace CAT|CAT
38 2001 Landrace CAT|CAT
39 2005 Improved CAT|CAT
40 2008 Improved CAT|CAT
41 2009 Landrace N|N
42 201 Improved CAT|CAT
43 2010 Landrace CAT|CAT
44 2016 Improved CAT|CAT
45 2019 Improved CAT|CAT
46 202 Improved CAT|CAT
47 2021 Improved N|N
48 2023 Improved CAT|CAT
49 2026 Improved CAT|CAT
50 2029 Improved CAT|CAT
51 2030 Landrace CAT|CAT
52 2031 Landrace CAT|CAT
53 2036 Improved CAT|CAT
54 2037 Improved CAT|CAT
55 2038 Improved CAT|CAT
56 2039 Improved CAT|CAT
57 204 Improved CAT|CAT
58 2042 Improved C|C
59 2043 Improved CAT|CAT
60 2048 Improved C|C
61 2049 Improved CAT|CAT
62 205 Improved CAT|CAT
63 2050 Improved CAT|CAT
64 2052 Improved CAT|CAT
65 2054 Improved CAT|CAT
66 2056 Improved CAT|CAT
67 2059 Improved CAT|CAT
68 206 Improved CAT|CAT
69 2064 Improved CAT|CAT
70 2065 Improved CAT|CAT
71 2067 Improved CAT|CAT
72 2068 Improved CAT|CAT
73 2069 Improved CAT|CAT
74 2071 Improved CAT|CAT
75 2074 Improved CAT|CAT
76 2075 Improved CAT|CAT
77 2076 Improved CAT|CAT
78 2080 Improved CAT|CAT
79 2081 Improved CAT|CAT
80 2082 Improved CAT|CAT
81 2086 Improved CAT|CAT
82 2088 Improved CAT|CAT
83 260 Wild sorghum N|N
84 261 Improved CAT|CAT
85 262 Improved CAT|CAT
86 263 Improved CAT|CAT
87 286 Improved N|N
88 29 Improved CAT|CAT
89 3 Improved CAT|CAT
90 302546 S.propinquum CAT|CAT
91 31 Improved CAT|CAT
92 32 Improved CAT|CAT
93 34 Improved CAT|CAT
94 346 Landrace CAT|CAT
95 348 Wild sorghum CAT|CAT
96 353 Wild sorghum CAT|CAT
97 355 Wild sorghum CAT|CAT
98 357 Wild sorghum CAT|CAT
99 364 Wild sorghum CAT|CAT
100 367 Landrace CAT|CAT
101 s37 S.propinquum CAT|CAT
102 s38 S.propinquum CAT|CAT
103 370 Landrace C|C
104 377 Wild sorghum CAT|CAT
105 392 Wild sorghum CAT|CAT
106 394 Wild sorghum N|N
107 40 Improved CAT|CAT
108 42 Improved N|N
109 43 Improved CAT|CAT
110 45 Improved CAT|CAT
111 47 Improved CAT|CAT
112 48 Improved CAT|CAT
113 51 Improved CAT|CAT
114 53 Improved CAT|CAT
115 56 Improved CAT|CAT
116 61 Improved CAT|CAT
117 62 Improved CAT|CAT
118 66 Landrace C|C
119 67 Improved CAT|CAT
120 68 Improved CAT|CAT
121 70 Improved CAT|CAT
122 73 Improved CAT|CAT
123 75 Improved CAT|CAT
124 88 Improved CAT|CAT
125 89 Improved CAT|CAT
126 91 Improved CAT|CAT
127 92 Improved CAT|CAT
128 93 Improved CAT|CAT
129 94 Improved CAT|CAT
130 95 Improved CAT|CAT
131 96 Improved CAT|CAT
132 97 Improved CAT|CAT
133 s1 Improved CAT|CAT
134 s36 Wild sorghum CAT|CAT
135 s2 Landrace CAT|CAT
136 s3 Improved CAT|CAT
137 s32 Improved CAT|CAT
138 s43 Weedy CAT|CAT
139 s40 Landrace CAT|CAT
140 s41 Weedy CAT|CAT
141 s39 Landrace CAT|CAT
142 s42 Landrace CAT|CAT
143 s47 Improved CAT|CAT
144 s5 Landrace CAT|CAT
145 GW102 Landrace CAT|CAT
146 GW103 Landrace CAT|CAT
147 GW104 Landrace CAT|CAT
148 GW105 Landrace CAT|CAT
149 GW16 Landrace CAT|CAT
150 GW2 Landrace CAT|CAT
151 GW34 Landrace CAT|CAT
152 GW37 Landrace CAT|CAT
153 GW58 Landrace CAT|CAT
154 GW59 Landrace CAT|CAT
155 GW9 Landrace CAT|CAT
156 s4 Weedy CAT|CAT
157 s6 Improved CAT|CAT
158 s7 Landrace CAT|CAT
159 s8 Landrace CAT|CAT
160 s9 Landrace CAT|CAT
161 J101 Landrace CAT|CAT
162 J103 Improved CAT|CAT
163 J112 Landrace CAT|CAT
164 J113 Improved C|C
165 J129 Improved CAT|CAT
166 J130 Improved CAT|CAT
167 J136 Improved CAT|CAT
168 J152 Improved CAT|CAT
169 J2 Landrace CAT|CAT
170 J20 Landrace CAT|CAT
171 J4 Landrace CAT|CAT
172 J42 Landrace CAT|CAT
173 J44 Landrace CAT|CAT
174 J49 Landrace CAT|CAT
175 J52 Landrace CAT|CAT
176 J53 Landrace CAT|CAT
177 J54 Landrace CAT|CAT
178 J57 Landrace CAT|CAT
179 J59 Landrace CAT|CAT
180 J64 Landrace CAT|CAT
181 J66 Landrace CAT|CAT
182 J67 Landrace N|N
183 J69 Landrace CAT|CAT
184 J87 Landrace CAT|CAT
185 J99 Landrace CAT|CAT
186 s45 Landrace CAT|CAT
187 s11 Improved CAT|CAT
188 s10 Improved CAT|CAT
189 s46 Improved CAT|CAT
190 s12 Improved CAT|CAT
191 s13 Landrace CAT|CAT
192 MHMD Landrace CAT|CAT
193 s14 Improved CAT|CAT
194 s15 Improved CAT|CAT
195 s34 Weedy CAT|CAT
196 s33 Wild sorghum CAT|CAT
197 s21 Wild sorghum CAT|CAT
198 s16 Wild sorghum CAT|CAT
199 s44 Improved CAT|CAT
200 s35 Landrace CAT|CAT
201 s31 Wild sorghum CAT|CAT
202 s17 Improved CAT|CAT
203 s18 Improved CAT|CAT
204 s20 Improved CAT|CAT
205 s19 Improved CAT|CAT
206 s22 Landrace CAT|CAT
207 s23 Landrace CAT|CAT
208 s24 Landrace CAT|CAT
209 s25 Landrace CAT|CAT
210 s26 Landrace CAT|CAT
211 s27 Landrace CAT|CAT
212 s28 Landrace CAT|CAT
213 s29 Landrace CAT|CAT
214 s30 Landrace CAT|CAT
215 SL25 Wild sorghum CAT|CAT
216 SL105 Wild sorghum CAT|CAT
217 SL108 Wild sorghum CAT|CAT
218 SL109 Wild sorghum CAT|CAT
219 SL12 Wild sorghum CAT|CAT
220 SL129 Wild sorghum CAT|CAT
221 SL130 Wild sorghum CAT|CAT
222 SL135 Wild sorghum CAT|CAT
223 SL136 Wild sorghum CAT|CAT
224 SL137 Wild sorghum CAT|CAT
225 SL138 Wild sorghum CAT|CAT
226 SL140 Wild sorghum CAT|CAT
227 SL141 Wild sorghum CAT|CAT
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum CAT|CAT
230 SL32 Wild sorghum CAT|CAT
231 SL35 Wild sorghum CAT|CAT
232 SL36 Wild sorghum CAT|CAT
233 SL37 Wild sorghum CAT|CAT
234 SL39 Wild sorghum CAT|CAT
235 SL41 Wild sorghum CAT|CAT
236 SL43 Wild sorghum CAT|CAT
237 SL47 Wild sorghum N|N
238 SL49 Wild sorghum CAT|CAT
239 SL51 Wild sorghum CAT|CAT
240 SL53 Wild sorghum CAT|CAT
241 SL62 Wild sorghum CAT|CAT
242 SL83 Wild sorghum CAT|C
243 SL97 Landrace CAT|CAT
244 s48 Improved CAT|C
245 Tu13 Wild sorghum CAT|CAT
246 Tu14 Wild sorghum CAT|CAT
247 Tu30 Wild sorghum CAT|CAT
248 Tu5 Wild sorghum CAT|CAT
249 WSC5 Landrace CAT|CAT
250 WSC15 Landrace CAT|CAT
251 WSC19 Landrace CAT|CAT
252 WSC30 Landrace N|N
253 WSC52 Landrace C|C
254 WSC6 Landrace CAT|CAT
255 WSC61 Landrace CAT|CAT
256 WSC71 Improved CAT|CAT
257 WSC72 Landrace CAT|CAT
258 WSC79 Landrace CAT|CAT
259 WSC94 Landrace CAT|CAT
260 WSC99 Landrace CAT|CAT
261 WSC100 Landrace CAT|CAT
262 WSC104 Landrace CAT|CAT
263 WSC105 Landrace CAT|CAT
264 WSC12 Landrace CAT|CAT
265 WSC13 Landrace CAT|CAT
266 WSC16 Landrace CAT|CAT
267 WSC17 Landrace CAT|CAT
268 WSC18 Landrace CAT|CAT
269 WSC20 Landrace CAT|CAT
270 WSC24 Landrace N|N
271 WSC25 Landrace CAT|CAT
272 WSC29 Landrace CAT|CAT
273 WSC31 Landrace C|C
274 WSC32 Landrace CAT|CAT
275 WSC34 Landrace C|C
276 WSC38 Landrace C|C
277 WSC39 Improved CAT|CAT
278 WSC40 Landrace N|N
279 WSC54 Landrace CAT|CAT
280 WSC56 Landrace CAT|CAT
281 WSC59 Landrace CAT|CAT
282 WSC68 Landrace CAT|CAT
283 WSC70 Landrace CAT|CAT
284 WSC73 Landrace CAT|CAT
285 WSC81 Landrace CAT|CAT
286 WSC85 Improved N|N
287 WSC91 Landrace CAT|CAT
288 WSC93 Landrace N|N
289 WSC98 Landrace CAT|CAT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825679 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825679 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825679 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p

Genome Browser