sorgsd

Variation ID : sbi33825685

Variation Detail

Variation ID	sbi33825685
Type	INDEL
Position	Chr01 46081-46086
Ref /Alleles	GTTGGC/ G
MAF	G: 0.004
5' Flank	GGGGTATTTATAGAAAGATTATCACAGACG
3' Flank	TTAAGTGAGCTGTCTGTGAAAAGGCATGTG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GTTGGC\|GTTGGC
2	103	Improved	GTTGGC\|GTTGGC
3	107	Improved	GTTGGC\|GTTGGC
4	11	Improved	GTTGGC\|GTTGGC
5	110	Improved	GTTGGC\|GTTGGC
6	123	Landrace	GTTGGC\|GTTGGC
7	131	Improved	GTTGGC\|GTTGGC
8	132	Improved	GTTGGC\|GTTGGC
9	135	Improved	GTTGGC\|GTTGGC
10	137	Improved	GTTGGC\|GTTGGC
11	138	Improved	GTTGGC\|GTTGGC
12	14	Improved	GTTGGC\|GTTGGC
13	140	Improved	GTTGGC\|GTTGGC
14	141	Improved	GTTGGC\|GTTGGC
15	144	Improved	GTTGGC\|GTTGGC
16	150	Improved	GTTGGC\|GTTGGC
17	154	Improved	N\|N
18	159	Landrace	GTTGGC\|GTTGGC
19	16	Improved	GTTGGC\|GTTGGC
20	161	Landrace	GTTGGC\|GTTGGC
21	167	Improved	GTTGGC\|GTTGGC
22	168	Improved	GTTGGC\|GTTGGC
23	170	Improved	GTTGGC\|GTTGGC
24	173	Improved	GTTGGC\|GTTGGC
25	175	Improved	GTTGGC\|GTTGGC
26	176	Improved	GTTGGC\|GTTGGC
27	182	Landrace	GTTGGC\|GTTGGC
28	186	Improved	GTTGGC\|GTTGGC
29	190	Improved	GTTGGC\|GTTGGC
30	192	Improved	GTTGGC\|GTTGGC
31	194	Improved	GTTGGC\|GTTGGC
32	195	Improved	N\|N
33	197	Improved	GTTGGC\|GTTGGC
34	J22	Landrace	GTTGGC\|GTTGGC
35	J26	Landrace	GTTGGC\|GTTGGC
36	J5	Landrace	GTTGGC\|GTTGGC
37	J50	Landrace	GTTGGC\|GTTGGC
38	2001	Landrace	GTTGGC\|GTTGGC
39	2005	Improved	N\|N
40	2008	Improved	GTTGGC\|GTTGGC
41	2009	Landrace	GTTGGC\|GTTGGC
42	201	Improved	GTTGGC\|GTTGGC
43	2010	Landrace	GTTGGC\|GTTGGC
44	2016	Improved	GTTGGC\|GTTGGC
45	2019	Improved	GTTGGC\|GTTGGC
46	202	Improved	GTTGGC\|GTTGGC
47	2021	Improved	N\|N
48	2023	Improved	GTTGGC\|GTTGGC
49	2026	Improved	GTTGGC\|GTTGGC
50	2029	Improved	GTTGGC\|GTTGGC
51	2030	Landrace	N\|N
52	2031	Landrace	GTTGGC\|GTTGGC
53	2036	Improved	GTTGGC\|GTTGGC
54	2037	Improved	GTTGGC\|GTTGGC
55	2038	Improved	GTTGGC\|GTTGGC
56	2039	Improved	GTTGGC\|GTTGGC
57	204	Improved	GTTGGC\|GTTGGC
58	2042	Improved	GTTGGC\|GTTGGC
59	2043	Improved	GTTGGC\|GTTGGC
60	2048	Improved	GTTGGC\|GTTGGC
61	2049	Improved	GTTGGC\|GTTGGC
62	205	Improved	GTTGGC\|GTTGGC
63	2050	Improved	GTTGGC\|GTTGGC
64	2052	Improved	GTTGGC\|GTTGGC
65	2054	Improved	GTTGGC\|GTTGGC
66	2056	Improved	GTTGGC\|GTTGGC
67	2059	Improved	GTTGGC\|GTTGGC
68	206	Improved	GTTGGC\|GTTGGC
69	2064	Improved	GTTGGC\|GTTGGC
70	2065	Improved	GTTGGC\|GTTGGC
71	2067	Improved	GTTGGC\|GTTGGC
72	2068	Improved	GTTGGC\|GTTGGC
73	2069	Improved	GTTGGC\|GTTGGC
74	2071	Improved	GTTGGC\|GTTGGC
75	2074	Improved	GTTGGC\|GTTGGC
76	2075	Improved	GTTGGC\|GTTGGC
77	2076	Improved	GTTGGC\|GTTGGC
78	2080	Improved	N\|N
79	2081	Improved	GTTGGC\|GTTGGC
80	2082	Improved	GTTGGC\|GTTGGC
81	2086	Improved	GTTGGC\|GTTGGC
82	2088	Improved	GTTGGC\|GTTGGC
83	260	Wild sorghum	N\|N
84	261	Improved	GTTGGC\|GTTGGC
85	262	Improved	GTTGGC\|GTTGGC
86	263	Improved	GTTGGC\|GTTGGC
87	286	Improved	GTTGGC\|GTTGGC
88	29	Improved	GTTGGC\|GTTGGC
89	3	Improved	N\|N
90	302546	S.propinquum	N\|N
91	31	Improved	GTTGGC\|GTTGGC
92	32	Improved	GTTGGC\|GTTGGC
93	34	Improved	N\|N
94	346	Landrace	GTTGGC\|GTTGGC
95	348	Wild sorghum	GTTGGC\|GTTGGC
96	353	Wild sorghum	N\|N
97	355	Wild sorghum	GTTGGC\|GTTGGC
98	357	Wild sorghum	GTTGGC\|GTTGGC
99	364	Wild sorghum	GTTGGC\|GTTGGC
100	367	Landrace	GTTGGC\|GTTGGC
101	s37	S.propinquum	GTTGGC\|GTTGGC
102	s38	S.propinquum	GTTGGC\|GTTGGC
103	370	Landrace	GTTGGC\|GTTGGC
104	377	Wild sorghum	GTTGGC\|GTTGGC
105	392	Wild sorghum	GTTGGC\|GTTGGC
106	394	Wild sorghum	GTTGGC\|GTTGGC
107	40	Improved	GTTGGC\|GTTGGC
108	42	Improved	GTTGGC\|GTTGGC
109	43	Improved	GTTGGC\|GTTGGC
110	45	Improved	GTTGGC\|GTTGGC
111	47	Improved	N\|N
112	48	Improved	GTTGGC\|GTTGGC
113	51	Improved	GTTGGC\|GTTGGC
114	53	Improved	GTTGGC\|GTTGGC
115	56	Improved	N\|N
116	61	Improved	GTTGGC\|GTTGGC
117	62	Improved	GTTGGC\|GTTGGC
118	66	Landrace	GTTGGC\|GTTGGC
119	67	Improved	GTTGGC\|GTTGGC
120	68	Improved	GTTGGC\|GTTGGC
121	70	Improved	GTTGGC\|GTTGGC
122	73	Improved	GTTGGC\|GTTGGC
123	75	Improved	GTTGGC\|GTTGGC
124	88	Improved	GTTGGC\|GTTGGC
125	89	Improved	GTTGGC\|GTTGGC
126	91	Improved	GTTGGC\|GTTGGC
127	92	Improved	N\|N
128	93	Improved	GTTGGC\|GTTGGC
129	94	Improved	GTTGGC\|GTTGGC
130	95	Improved	GTTGGC\|GTTGGC
131	96	Improved	GTTGGC\|GTTGGC
132	97	Improved	GTTGGC\|GTTGGC
133	s1	Improved	GTTGGC\|GTTGGC
134	s36	Wild sorghum	GTTGGC\|GTTGGC
135	s2	Landrace	GTTGGC\|GTTGGC
136	s3	Improved	GTTGGC\|GTTGGC
137	s32	Improved	GTTGGC\|GTTGGC
138	s43	Weedy	GTTGGC\|GTTGGC
139	s40	Landrace	GTTGGC\|GTTGGC
140	s41	Weedy	GTTGGC\|GTTGGC
141	s39	Landrace	GTTGGC\|GTTGGC
142	s42	Landrace	GTTGGC\|GTTGGC
143	s47	Improved	GTTGGC\|GTTGGC
144	s5	Landrace	GTTGGC\|GTTGGC
145	GW102	Landrace	GTTGGC\|GTTGGC
146	GW103	Landrace	GTTGGC\|GTTGGC
147	GW104	Landrace	GTTGGC\|GTTGGC
148	GW105	Landrace	GTTGGC\|GTTGGC
149	GW16	Landrace	GTTGGC\|GTTGGC
150	GW2	Landrace	GTTGGC\|GTTGGC
151	GW34	Landrace	GTTGGC\|GTTGGC
152	GW37	Landrace	N\|N
153	GW58	Landrace	GTTGGC\|GTTGGC
154	GW59	Landrace	GTTGGC\|GTTGGC
155	GW9	Landrace	GTTGGC\|GTTGGC
156	s4	Weedy	GTTGGC\|GTTGGC
157	s6	Improved	GTTGGC\|GTTGGC
158	s7	Landrace	GTTGGC\|GTTGGC
159	s8	Landrace	GTTGGC\|GTTGGC
160	s9	Landrace	GTTGGC\|GTTGGC
161	J101	Landrace	GTTGGC\|GTTGGC
162	J103	Improved	GTTGGC\|GTTGGC
163	J112	Landrace	GTTGGC\|GTTGGC
164	J113	Improved	GTTGGC\|GTTGGC
165	J129	Improved	GTTGGC\|GTTGGC
166	J130	Improved	GTTGGC\|GTTGGC
167	J136	Improved	GTTGGC\|GTTGGC
168	J152	Improved	N\|N
169	J2	Landrace	GTTGGC\|GTTGGC
170	J20	Landrace	GTTGGC\|GTTGGC
171	J4	Landrace	GTTGGC\|GTTGGC
172	J42	Landrace	GTTGGC\|GTTGGC
173	J44	Landrace	GTTGGC\|GTTGGC
174	J49	Landrace	GTTGGC\|GTTGGC
175	J52	Landrace	GTTGGC\|GTTGGC
176	J53	Landrace	GTTGGC\|GTTGGC
177	J54	Landrace	GTTGGC\|GTTGGC
178	J57	Landrace	GTTGGC\|GTTGGC
179	J59	Landrace	GTTGGC\|GTTGGC
180	J64	Landrace	GTTGGC\|GTTGGC
181	J66	Landrace	GTTGGC\|GTTGGC
182	J67	Landrace	GTTGGC\|GTTGGC
183	J69	Landrace	GTTGGC\|GTTGGC
184	J87	Landrace	GTTGGC\|GTTGGC
185	J99	Landrace	GTTGGC\|GTTGGC
186	s45	Landrace	GTTGGC\|GTTGGC
187	s11	Improved	GTTGGC\|GTTGGC
188	s10	Improved	GTTGGC\|GTTGGC
189	s46	Improved	GTTGGC\|GTTGGC
190	s12	Improved	GTTGGC\|GTTGGC
191	s13	Landrace	GTTGGC\|GTTGGC
192	MHMD	Landrace	GTTGGC\|GTTGGC
193	s14	Improved	GTTGGC\|GTTGGC
194	s15	Improved	GTTGGC\|GTTGGC
195	s34	Weedy	GTTGGC\|GTTGGC
196	s33	Wild sorghum	GTTGGC\|GTTGGC
197	s21	Wild sorghum	GTTGGC\|GTTGGC
198	s16	Wild sorghum	GTTGGC\|GTTGGC
199	s44	Improved	GTTGGC\|GTTGGC
200	s35	Landrace	GTTGGC\|GTTGGC
201	s31	Wild sorghum	GTTGGC\|GTTGGC
202	s17	Improved	GTTGGC\|GTTGGC
203	s18	Improved	GTTGGC\|GTTGGC
204	s20	Improved	GTTGGC\|GTTGGC
205	s19	Improved	GTTGGC\|GTTGGC
206	s22	Landrace	GTTGGC\|GTTGGC
207	s23	Landrace	GTTGGC\|GTTGGC
208	s24	Landrace	GTTGGC\|GTTGGC
209	s25	Landrace	GTTGGC\|GTTGGC
210	s26	Landrace	GTTGGC\|GTTGGC
211	s27	Landrace	GTTGGC\|GTTGGC
212	s28	Landrace	GTTGGC\|GTTGGC
213	s29	Landrace	GTTGGC\|GTTGGC
214	s30	Landrace	GTTGGC\|GTTGGC
215	SL25	Wild sorghum	GTTGGC\|GTTGGC
216	SL105	Wild sorghum	GTTGGC\|GTTGGC
217	SL108	Wild sorghum	GTTGGC\|GTTGGC
218	SL109	Wild sorghum	GTTGGC\|GTTGGC
219	SL12	Wild sorghum	GTTGGC\|GTTGGC
220	SL129	Wild sorghum	GTTGGC\|GTTGGC
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	GTTGGC\|GTTGGC
223	SL136	Wild sorghum	GTTGGC\|GTTGGC
224	SL137	Wild sorghum	N\|N
225	SL138	Wild sorghum	GTTGGC\|GTTGGC
226	SL140	Wild sorghum	GTTGGC\|GTTGGC
227	SL141	Wild sorghum	GTTGGC\|GTTGGC
228	SL19	Wild sorghum	GTTGGC\|GTTGGC
229	SL28	Wild sorghum	GTTGGC\|GTTGGC
230	SL32	Wild sorghum	GTTGGC\|GTTGGC
231	SL35	Wild sorghum	GTTGGC\|GTTGGC
232	SL36	Wild sorghum	GTTGGC\|GTTGGC
233	SL37	Wild sorghum	GTTGGC\|GTTGGC
234	SL39	Wild sorghum	GTTGGC\|GTTGGC
235	SL41	Wild sorghum	G\|G
236	SL43	Wild sorghum	GTTGGC\|GTTGGC
237	SL47	Wild sorghum	N\|N
238	SL49	Wild sorghum	GTTGGC\|GTTGGC
239	SL51	Wild sorghum	GTTGGC\|GTTGGC
240	SL53	Wild sorghum	GTTGGC\|GTTGGC
241	SL62	Wild sorghum	N\|N
242	SL83	Wild sorghum	GTTGGC\|GTTGGC
243	SL97	Landrace	GTTGGC\|GTTGGC
244	s48	Improved	GTTGGC\|GTTGGC
245	Tu13	Wild sorghum	GTTGGC\|GTTGGC
246	Tu14	Wild sorghum	GTTGGC\|GTTGGC
247	Tu30	Wild sorghum	GTTGGC\|GTTGGC
248	Tu5	Wild sorghum	GTTGGC\|GTTGGC
249	WSC5	Landrace	GTTGGC\|GTTGGC
250	WSC15	Landrace	GTTGGC\|GTTGGC
251	WSC19	Landrace	N\|N
252	WSC30	Landrace	GTTGGC\|GTTGGC
253	WSC52	Landrace	GTTGGC\|GTTGGC
254	WSC6	Landrace	GTTGGC\|GTTGGC
255	WSC61	Landrace	GTTGGC\|GTTGGC
256	WSC71	Improved	GTTGGC\|GTTGGC
257	WSC72	Landrace	GTTGGC\|GTTGGC
258	WSC79	Landrace	GTTGGC\|GTTGGC
259	WSC94	Landrace	GTTGGC\|GTTGGC
260	WSC99	Landrace	GTTGGC\|GTTGGC
261	WSC100	Landrace	GTTGGC\|GTTGGC
262	WSC104	Landrace	GTTGGC\|GTTGGC
263	WSC105	Landrace	GTTGGC\|GTTGGC
264	WSC12	Landrace	GTTGGC\|GTTGGC
265	WSC13	Landrace	GTTGGC\|GTTGGC
266	WSC16	Landrace	GTTGGC\|GTTGGC
267	WSC17	Landrace	GTTGGC\|GTTGGC
268	WSC18	Landrace	GTTGGC\|GTTGGC
269	WSC20	Landrace	GTTGGC\|GTTGGC
270	WSC24	Landrace	GTTGGC\|GTTGGC
271	WSC25	Landrace	GTTGGC\|GTTGGC
272	WSC29	Landrace	GTTGGC\|GTTGGC
273	WSC31	Landrace	N\|N
274	WSC32	Landrace	GTTGGC\|GTTGGC
275	WSC34	Landrace	GTTGGC\|GTTGGC
276	WSC38	Landrace	GTTGGC\|GTTGGC
277	WSC39	Improved	GTTGGC\|GTTGGC
278	WSC40	Landrace	GTTGGC\|GTTGGC
279	WSC54	Landrace	GTTGGC\|GTTGGC
280	WSC56	Landrace	GTTGGC\|GTTGGC
281	WSC59	Landrace	GTTGGC\|GTTGGC
282	WSC68	Landrace	GTTGGC\|GTTGGC
283	WSC70	Landrace	GTTGGC\|GTTGGC
284	WSC73	Landrace	GTTGGC\|GTTGGC
285	WSC81	Landrace	GTTGGC\|GTTGGC
286	WSC85	Improved	GTTGGC\|GTTGGC
287	WSC91	Landrace	GTTGGC\|GTTGGC
288	WSC93	Landrace	GTTGGC\|GTTGGC
289	WSC98	Landrace	N\|N

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825685	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825685	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825685	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

Genome Browser