sorgsd

Variation ID : sbi33825687

Variation Detail

Variation ID	sbi33825687
Type	INDEL
Position	Chr01 46299-46303
Ref /Alleles	GCCAC/ G
MAF	G: 0.007
5' Flank	TACCATTAACACAGACGGTTGTTATCTCTT
3' Flank	ACTGTTTTTACAACACAGACGCATGATAAC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GCCAC\|GCCAC
2	103	Improved	GCCAC\|GCCAC
3	107	Improved	GCCAC\|GCCAC
4	11	Improved	GCCAC\|GCCAC
5	110	Improved	GCCAC\|GCCAC
6	123	Landrace	GCCAC\|GCCAC
7	131	Improved	GCCAC\|GCCAC
8	132	Improved	GCCAC\|GCCAC
9	135	Improved	GCCAC\|GCCAC
10	137	Improved	GCCAC\|GCCAC
11	138	Improved	GCCAC\|GCCAC
12	14	Improved	GCCAC\|GCCAC
13	140	Improved	GCCAC\|GCCAC
14	141	Improved	GCCAC\|GCCAC
15	144	Improved	GCCAC\|GCCAC
16	150	Improved	GCCAC\|GCCAC
17	154	Improved	GCCAC\|GCCAC
18	159	Landrace	GCCAC\|GCCAC
19	16	Improved	GCCAC\|GCCAC
20	161	Landrace	GCCAC\|GCCAC
21	167	Improved	GCCAC\|GCCAC
22	168	Improved	GCCAC\|GCCAC
23	170	Improved	GCCAC\|GCCAC
24	173	Improved	GCCAC\|GCCAC
25	175	Improved	GCCAC\|GCCAC
26	176	Improved	N\|N
27	182	Landrace	GCCAC\|GCCAC
28	186	Improved	GCCAC\|GCCAC
29	190	Improved	GCCAC\|GCCAC
30	192	Improved	GCCAC\|GCCAC
31	194	Improved	GCCAC\|GCCAC
32	195	Improved	GCCAC\|GCCAC
33	197	Improved	GCCAC\|GCCAC
34	J22	Landrace	GCCAC\|GCCAC
35	J26	Landrace	GCCAC\|GCCAC
36	J5	Landrace	GCCAC\|GCCAC
37	J50	Landrace	GCCAC\|GCCAC
38	2001	Landrace	GCCAC\|GCCAC
39	2005	Improved	GCCAC\|GCCAC
40	2008	Improved	GCCAC\|GCCAC
41	2009	Landrace	GCCAC\|GCCAC
42	201	Improved	GCCAC\|GCCAC
43	2010	Landrace	GCCAC\|GCCAC
44	2016	Improved	GCCAC\|GCCAC
45	2019	Improved	GCCAC\|GCCAC
46	202	Improved	GCCAC\|GCCAC
47	2021	Improved	GCCAC\|GCCAC
48	2023	Improved	GCCAC\|GCCAC
49	2026	Improved	N\|N
50	2029	Improved	GCCAC\|GCCAC
51	2030	Landrace	GCCAC\|GCCAC
52	2031	Landrace	GCCAC\|GCCAC
53	2036	Improved	GCCAC\|GCCAC
54	2037	Improved	GCCAC\|GCCAC
55	2038	Improved	GCCAC\|GCCAC
56	2039	Improved	GCCAC\|GCCAC
57	204	Improved	GCCAC\|GCCAC
58	2042	Improved	GCCAC\|GCCAC
59	2043	Improved	GCCAC\|GCCAC
60	2048	Improved	GCCAC\|GCCAC
61	2049	Improved	GCCAC\|GCCAC
62	205	Improved	GCCAC\|GCCAC
63	2050	Improved	N\|N
64	2052	Improved	GCCAC\|GCCAC
65	2054	Improved	GCCAC\|GCCAC
66	2056	Improved	GCCAC\|GCCAC
67	2059	Improved	GCCAC\|GCCAC
68	206	Improved	GCCAC\|GCCAC
69	2064	Improved	GCCAC\|GCCAC
70	2065	Improved	GCCAC\|GCCAC
71	2067	Improved	GCCAC\|GCCAC
72	2068	Improved	N\|N
73	2069	Improved	GCCAC\|GCCAC
74	2071	Improved	GCCAC\|GCCAC
75	2074	Improved	GCCAC\|GCCAC
76	2075	Improved	GCCAC\|GCCAC
77	2076	Improved	GCCAC\|GCCAC
78	2080	Improved	GCCAC\|GCCAC
79	2081	Improved	GCCAC\|GCCAC
80	2082	Improved	GCCAC\|GCCAC
81	2086	Improved	GCCAC\|GCCAC
82	2088	Improved	GCCAC\|GCCAC
83	260	Wild sorghum	N\|N
84	261	Improved	GCCAC\|GCCAC
85	262	Improved	N\|N
86	263	Improved	GCCAC\|GCCAC
87	286	Improved	GCCAC\|GCCAC
88	29	Improved	GCCAC\|GCCAC
89	3	Improved	GCCAC\|GCCAC
90	302546	S.propinquum	GCCAC\|GCCAC
91	31	Improved	GCCAC\|GCCAC
92	32	Improved	GCCAC\|GCCAC
93	34	Improved	GCCAC\|GCCAC
94	346	Landrace	N\|N
95	348	Wild sorghum	GCCAC\|GCCAC
96	353	Wild sorghum	N\|N
97	355	Wild sorghum	GCCAC\|GCCAC
98	357	Wild sorghum	GCCAC\|GCCAC
99	364	Wild sorghum	GCCAC\|GCCAC
100	367	Landrace	GCCAC\|GCCAC
101	s37	S.propinquum	G\|G
102	s38	S.propinquum	G\|G
103	370	Landrace	GCCAC\|GCCAC
104	377	Wild sorghum	GCCAC\|GCCAC
105	392	Wild sorghum	GCCAC\|GCCAC
106	394	Wild sorghum	GCCAC\|GCCAC
107	40	Improved	GCCAC\|GCCAC
108	42	Improved	GCCAC\|GCCAC
109	43	Improved	GCCAC\|GCCAC
110	45	Improved	GCCAC\|GCCAC
111	47	Improved	GCCAC\|GCCAC
112	48	Improved	GCCAC\|GCCAC
113	51	Improved	GCCAC\|GCCAC
114	53	Improved	GCCAC\|GCCAC
115	56	Improved	GCCAC\|GCCAC
116	61	Improved	GCCAC\|GCCAC
117	62	Improved	N\|N
118	66	Landrace	N\|N
119	67	Improved	GCCAC\|GCCAC
120	68	Improved	GCCAC\|GCCAC
121	70	Improved	GCCAC\|GCCAC
122	73	Improved	GCCAC\|GCCAC
123	75	Improved	GCCAC\|GCCAC
124	88	Improved	GCCAC\|GCCAC
125	89	Improved	GCCAC\|GCCAC
126	91	Improved	GCCAC\|GCCAC
127	92	Improved	GCCAC\|GCCAC
128	93	Improved	GCCAC\|GCCAC
129	94	Improved	GCCAC\|GCCAC
130	95	Improved	GCCAC\|GCCAC
131	96	Improved	GCCAC\|GCCAC
132	97	Improved	GCCAC\|GCCAC
133	s1	Improved	GCCAC\|GCCAC
134	s36	Wild sorghum	GCCAC\|GCCAC
135	s2	Landrace	GCCAC\|GCCAC
136	s3	Improved	GCCAC\|GCCAC
137	s32	Improved	GCCAC\|GCCAC
138	s43	Weedy	GCCAC\|GCCAC
139	s40	Landrace	GCCAC\|GCCAC
140	s41	Weedy	GCCAC\|GCCAC
141	s39	Landrace	GCCAC\|GCCAC
142	s42	Landrace	GCCAC\|GCCAC
143	s47	Improved	GCCAC\|GCCAC
144	s5	Landrace	GCCAC\|GCCAC
145	GW102	Landrace	GCCAC\|GCCAC
146	GW103	Landrace	GCCAC\|GCCAC
147	GW104	Landrace	GCCAC\|GCCAC
148	GW105	Landrace	GCCAC\|GCCAC
149	GW16	Landrace	GCCAC\|GCCAC
150	GW2	Landrace	GCCAC\|GCCAC
151	GW34	Landrace	GCCAC\|GCCAC
152	GW37	Landrace	GCCAC\|GCCAC
153	GW58	Landrace	GCCAC\|GCCAC
154	GW59	Landrace	GCCAC\|GCCAC
155	GW9	Landrace	GCCAC\|GCCAC
156	s4	Weedy	GCCAC\|GCCAC
157	s6	Improved	GCCAC\|GCCAC
158	s7	Landrace	GCCAC\|GCCAC
159	s8	Landrace	GCCAC\|GCCAC
160	s9	Landrace	GCCAC\|GCCAC
161	J101	Landrace	GCCAC\|GCCAC
162	J103	Improved	GCCAC\|GCCAC
163	J112	Landrace	N\|N
164	J113	Improved	GCCAC\|GCCAC
165	J129	Improved	GCCAC\|GCCAC
166	J130	Improved	GCCAC\|GCCAC
167	J136	Improved	GCCAC\|GCCAC
168	J152	Improved	GCCAC\|GCCAC
169	J2	Landrace	GCCAC\|GCCAC
170	J20	Landrace	GCCAC\|GCCAC
171	J4	Landrace	GCCAC\|GCCAC
172	J42	Landrace	N\|N
173	J44	Landrace	N\|N
174	J49	Landrace	GCCAC\|GCCAC
175	J52	Landrace	GCCAC\|GCCAC
176	J53	Landrace	GCCAC\|GCCAC
177	J54	Landrace	GCCAC\|GCCAC
178	J57	Landrace	GCCAC\|GCCAC
179	J59	Landrace	GCCAC\|GCCAC
180	J64	Landrace	GCCAC\|GCCAC
181	J66	Landrace	N\|N
182	J67	Landrace	GCCAC\|GCCAC
183	J69	Landrace	GCCAC\|GCCAC
184	J87	Landrace	GCCAC\|GCCAC
185	J99	Landrace	GCCAC\|GCCAC
186	s45	Landrace	GCCAC\|GCCAC
187	s11	Improved	GCCAC\|GCCAC
188	s10	Improved	GCCAC\|GCCAC
189	s46	Improved	GCCAC\|GCCAC
190	s12	Improved	GCCAC\|GCCAC
191	s13	Landrace	GCCAC\|GCCAC
192	MHMD	Landrace	GCCAC\|GCCAC
193	s14	Improved	GCCAC\|GCCAC
194	s15	Improved	GCCAC\|GCCAC
195	s34	Weedy	GCCAC\|GCCAC
196	s33	Wild sorghum	GCCAC\|GCCAC
197	s21	Wild sorghum	GCCAC\|GCCAC
198	s16	Wild sorghum	GCCAC\|GCCAC
199	s44	Improved	GCCAC\|GCCAC
200	s35	Landrace	GCCAC\|GCCAC
201	s31	Wild sorghum	GCCAC\|GCCAC
202	s17	Improved	GCCAC\|GCCAC
203	s18	Improved	GCCAC\|GCCAC
204	s20	Improved	GCCAC\|GCCAC
205	s19	Improved	GCCAC\|GCCAC
206	s22	Landrace	GCCAC\|GCCAC
207	s23	Landrace	GCCAC\|GCCAC
208	s24	Landrace	GCCAC\|GCCAC
209	s25	Landrace	GCCAC\|GCCAC
210	s26	Landrace	GCCAC\|GCCAC
211	s27	Landrace	GCCAC\|GCCAC
212	s28	Landrace	GCCAC\|GCCAC
213	s29	Landrace	GCCAC\|GCCAC
214	s30	Landrace	GCCAC\|GCCAC
215	SL25	Wild sorghum	GCCAC\|GCCAC
216	SL105	Wild sorghum	GCCAC\|GCCAC
217	SL108	Wild sorghum	GCCAC\|GCCAC
218	SL109	Wild sorghum	GCCAC\|GCCAC
219	SL12	Wild sorghum	N\|N
220	SL129	Wild sorghum	GCCAC\|GCCAC
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	GCCAC\|GCCAC
223	SL136	Wild sorghum	GCCAC\|GCCAC
224	SL137	Wild sorghum	GCCAC\|GCCAC
225	SL138	Wild sorghum	GCCAC\|GCCAC
226	SL140	Wild sorghum	GCCAC\|GCCAC
227	SL141	Wild sorghum	GCCAC\|GCCAC
228	SL19	Wild sorghum	GCCAC\|GCCAC
229	SL28	Wild sorghum	GCCAC\|GCCAC
230	SL32	Wild sorghum	GCCAC\|GCCAC
231	SL35	Wild sorghum	GCCAC\|GCCAC
232	SL36	Wild sorghum	GCCAC\|GCCAC
233	SL37	Wild sorghum	GCCAC\|GCCAC
234	SL39	Wild sorghum	GCCAC\|GCCAC
235	SL41	Wild sorghum	GCCAC\|GCCAC
236	SL43	Wild sorghum	GCCAC\|GCCAC
237	SL47	Wild sorghum	GCCAC\|GCCAC
238	SL49	Wild sorghum	GCCAC\|GCCAC
239	SL51	Wild sorghum	GCCAC\|GCCAC
240	SL53	Wild sorghum	GCCAC\|GCCAC
241	SL62	Wild sorghum	GCCAC\|GCCAC
242	SL83	Wild sorghum	GCCAC\|GCCAC
243	SL97	Landrace	GCCAC\|GCCAC
244	s48	Improved	GCCAC\|GCCAC
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	GCCAC\|GCCAC
247	Tu30	Wild sorghum	GCCAC\|GCCAC
248	Tu5	Wild sorghum	GCCAC\|GCCAC
249	WSC5	Landrace	GCCAC\|GCCAC
250	WSC15	Landrace	GCCAC\|GCCAC
251	WSC19	Landrace	N\|N
252	WSC30	Landrace	GCCAC\|GCCAC
253	WSC52	Landrace	GCCAC\|GCCAC
254	WSC6	Landrace	GCCAC\|GCCAC
255	WSC61	Landrace	GCCAC\|GCCAC
256	WSC71	Improved	GCCAC\|GCCAC
257	WSC72	Landrace	GCCAC\|GCCAC
258	WSC79	Landrace	GCCAC\|GCCAC
259	WSC94	Landrace	GCCAC\|GCCAC
260	WSC99	Landrace	GCCAC\|GCCAC
261	WSC100	Landrace	GCCAC\|GCCAC
262	WSC104	Landrace	GCCAC\|GCCAC
263	WSC105	Landrace	GCCAC\|GCCAC
264	WSC12	Landrace	GCCAC\|GCCAC
265	WSC13	Landrace	GCCAC\|GCCAC
266	WSC16	Landrace	GCCAC\|GCCAC
267	WSC17	Landrace	GCCAC\|GCCAC
268	WSC18	Landrace	GCCAC\|GCCAC
269	WSC20	Landrace	GCCAC\|GCCAC
270	WSC24	Landrace	GCCAC\|GCCAC
271	WSC25	Landrace	GCCAC\|GCCAC
272	WSC29	Landrace	GCCAC\|GCCAC
273	WSC31	Landrace	GCCAC\|GCCAC
274	WSC32	Landrace	GCCAC\|GCCAC
275	WSC34	Landrace	GCCAC\|GCCAC
276	WSC38	Landrace	GCCAC\|GCCAC
277	WSC39	Improved	GCCAC\|GCCAC
278	WSC40	Landrace	GCCAC\|GCCAC
279	WSC54	Landrace	GCCAC\|GCCAC
280	WSC56	Landrace	GCCAC\|GCCAC
281	WSC59	Landrace	GCCAC\|GCCAC
282	WSC68	Landrace	GCCAC\|GCCAC
283	WSC70	Landrace	GCCAC\|GCCAC
284	WSC73	Landrace	GCCAC\|GCCAC
285	WSC81	Landrace	GCCAC\|GCCAC
286	WSC85	Improved	N\|N
287	WSC91	Landrace	GCCAC\|GCCAC
288	WSC93	Landrace	GCCAC\|GCCAC
289	WSC98	Landrace	GCCAC\|GCCAC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825687	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825687	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825687	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

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