Variation ID : sbi33825690

Variation Detail



Variation ID sbi33825690
Type INDEL
Position Chr01 46546-46547
Ref /Alleles TC/ T
MAF T: 0.059
5' Flank AGTCTCTTTGCCGAGAATTTTGTTTGACAC
3' Flank CGAAAAAATCTCTTTGCCGAATGTTTTTTT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved TC|TC
2 103 Improved TC|TC
3 107 Improved N|N
4 11 Improved TC|TC
5 110 Improved TC|TC
6 123 Landrace N|N
7 131 Improved TC|TC
8 132 Improved T|T
9 135 Improved TC|TC
10 137 Improved TC|TC
11 138 Improved TC|TC
12 14 Improved TC|TC
13 140 Improved N|N
14 141 Improved N|N
15 144 Improved N|N
16 150 Improved TC|TC
17 154 Improved T|T
18 159 Landrace N|N
19 16 Improved TC|TC
20 161 Landrace TC|TC
21 167 Improved TC|TC
22 168 Improved TC|TC
23 170 Improved TC|TC
24 173 Improved T|T
25 175 Improved TC|TC
26 176 Improved N|N
27 182 Landrace TC|TC
28 186 Improved TC|TC
29 190 Improved TC|TC
30 192 Improved TC|TC
31 194 Improved N|N
32 195 Improved TC|TC
33 197 Improved N|N
34 J22 Landrace TC|TC
35 J26 Landrace TC|TC
36 J5 Landrace TC|TC
37 J50 Landrace TC|TC
38 2001 Landrace N|N
39 2005 Improved N|N
40 2008 Improved N|N
41 2009 Landrace TC|TC
42 201 Improved N|N
43 2010 Landrace TC|TC
44 2016 Improved N|N
45 2019 Improved TC|TC
46 202 Improved TC|TC
47 2021 Improved TC|TC
48 2023 Improved N|N
49 2026 Improved TC|TC
50 2029 Improved TC|TC
51 2030 Landrace TC|TC
52 2031 Landrace TC|TC
53 2036 Improved N|N
54 2037 Improved TC|TC
55 2038 Improved TC|TC
56 2039 Improved TC|TC
57 204 Improved TC|TC
58 2042 Improved TC|TC
59 2043 Improved TC|TC
60 2048 Improved N|N
61 2049 Improved TC|TC
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved TC|TC
65 2054 Improved TC|TC
66 2056 Improved N|N
67 2059 Improved TC|TC
68 206 Improved TC|TC
69 2064 Improved TC|TC
70 2065 Improved TC|TC
71 2067 Improved N|N
72 2068 Improved TC|TC
73 2069 Improved TC|TC
74 2071 Improved TC|TC
75 2074 Improved TC|TC
76 2075 Improved TC|TC
77 2076 Improved TC|TC
78 2080 Improved TC|TC
79 2081 Improved N|N
80 2082 Improved TC|TC
81 2086 Improved TC|TC
82 2088 Improved TC|TC
83 260 Wild sorghum N|N
84 261 Improved TC|TC
85 262 Improved N|N
86 263 Improved TC|TC
87 286 Improved TC|TC
88 29 Improved T|T
89 3 Improved TC|TC
90 302546 S.propinquum N|N
91 31 Improved TC|TC
92 32 Improved TC|TC
93 34 Improved T|T
94 346 Landrace TC|TC
95 348 Wild sorghum TC|TC
96 353 Wild sorghum N|N
97 355 Wild sorghum TC|TC
98 357 Wild sorghum TC|TC
99 364 Wild sorghum N|N
100 367 Landrace TC|TC
101 s37 S.propinquum TC|TC
102 s38 S.propinquum TC|TC
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved TC|TC
108 42 Improved N|N
109 43 Improved TC|TC
110 45 Improved TC|TC
111 47 Improved TC|TC
112 48 Improved TC|TC
113 51 Improved TC|TC
114 53 Improved TC|TC
115 56 Improved TC|TC
116 61 Improved TC|TC
117 62 Improved TC|TC
118 66 Landrace N|N
119 67 Improved TC|TC
120 68 Improved TC|TC
121 70 Improved N|N
122 73 Improved TC|TC
123 75 Improved TC|TC
124 88 Improved TC|TC
125 89 Improved TC|TC
126 91 Improved TC|TC
127 92 Improved TC|TC
128 93 Improved TC|TC
129 94 Improved TC|TC
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved TC|TC
133 s1 Improved TC|TC
134 s36 Wild sorghum T|T
135 s2 Landrace TC|TC
136 s3 Improved TC|TC
137 s32 Improved TC|TC
138 s43 Weedy TC|TC
139 s40 Landrace TC|TC
140 s41 Weedy TC|TC
141 s39 Landrace TC|TC
142 s42 Landrace TC|TC
143 s47 Improved TC|TC
144 s5 Landrace TC|TC
145 GW102 Landrace TC|TC
146 GW103 Landrace N|N
147 GW104 Landrace TC|TC
148 GW105 Landrace N|N
149 GW16 Landrace TC|TC
150 GW2 Landrace TC|TC
151 GW34 Landrace TC|TC
152 GW37 Landrace TC|TC
153 GW58 Landrace N|N
154 GW59 Landrace TC|TC
155 GW9 Landrace TC|TC
156 s4 Weedy TC|TC
157 s6 Improved TC|TC
158 s7 Landrace TC|TC
159 s8 Landrace TC|TC
160 s9 Landrace TC|TC
161 J101 Landrace T|T
162 J103 Improved TC|TC
163 J112 Landrace TC|TC
164 J113 Improved N|N
165 J129 Improved TC|TC
166 J130 Improved N|N
167 J136 Improved N|N
168 J152 Improved TC|TC
169 J2 Landrace TC|TC
170 J20 Landrace TC|TC
171 J4 Landrace TC|TC
172 J42 Landrace TC|TC
173 J44 Landrace N|N
174 J49 Landrace N|N
175 J52 Landrace N|N
176 J53 Landrace TC|TC
177 J54 Landrace TC|TC
178 J57 Landrace TC|TC
179 J59 Landrace TC|TC
180 J64 Landrace TC|TC
181 J66 Landrace TC|TC
182 J67 Landrace TC|TC
183 J69 Landrace TC|TC
184 J87 Landrace TC|TC
185 J99 Landrace TC|TC
186 s45 Landrace TC|TC
187 s11 Improved TC|TC
188 s10 Improved TC|TC
189 s46 Improved TC|TC
190 s12 Improved TC|TC
191 s13 Landrace TC|TC
192 MHMD Landrace TC|TC
193 s14 Improved TC|TC
194 s15 Improved TC|TC
195 s34 Weedy TC|TC
196 s33 Wild sorghum T|T
197 s21 Wild sorghum TC|TC
198 s16 Wild sorghum TC|TC
199 s44 Improved TC|TC
200 s35 Landrace TC|TC
201 s31 Wild sorghum TC|TC
202 s17 Improved TC|TC
203 s18 Improved TC|TC
204 s20 Improved TC|TC
205 s19 Improved TC|TC
206 s22 Landrace TC|TC
207 s23 Landrace TC|TC
208 s24 Landrace TC|TC
209 s25 Landrace TC|TC
210 s26 Landrace TC|TC
211 s27 Landrace TC|TC
212 s28 Landrace TC|TC
213 s29 Landrace TC|TC
214 s30 Landrace TC|TC
215 SL25 Wild sorghum TC|TC
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum TC|TC
219 SL12 Wild sorghum TC|TC
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum N|N
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum TC|TC
224 SL137 Wild sorghum TC|TC
225 SL138 Wild sorghum TC|TC
226 SL140 Wild sorghum TC|TC
227 SL141 Wild sorghum TC|TC
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum TC|TC
230 SL32 Wild sorghum TC|TC
231 SL35 Wild sorghum TC|TC
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum N|N
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum TC|TC
237 SL47 Wild sorghum N|N
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum TC|TC
240 SL53 Wild sorghum TC|TC
241 SL62 Wild sorghum TC|TC
242 SL83 Wild sorghum TC|TC
243 SL97 Landrace TC|TC
244 s48 Improved TC|TC
245 Tu13 Wild sorghum T|T
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum T|T
248 Tu5 Wild sorghum TC|TC
249 WSC5 Landrace TC|TC
250 WSC15 Landrace TC|TC
251 WSC19 Landrace TC|TC
252 WSC30 Landrace N|N
253 WSC52 Landrace N|N
254 WSC6 Landrace TC|TC
255 WSC61 Landrace TC|TC
256 WSC71 Improved TC|TC
257 WSC72 Landrace TC|TC
258 WSC79 Landrace TC|TC
259 WSC94 Landrace N|N
260 WSC99 Landrace TC|TC
261 WSC100 Landrace T|T
262 WSC104 Landrace T|T
263 WSC105 Landrace N|N
264 WSC12 Landrace TC|TC
265 WSC13 Landrace TC|TC
266 WSC16 Landrace TC|TC
267 WSC17 Landrace TC|TC
268 WSC18 Landrace TC|TC
269 WSC20 Landrace TC|TC
270 WSC24 Landrace TC|TC
271 WSC25 Landrace N|N
272 WSC29 Landrace N|N
273 WSC31 Landrace TC|TC
274 WSC32 Landrace N|N
275 WSC34 Landrace N|N
276 WSC38 Landrace TC|TC
277 WSC39 Improved TC|TC
278 WSC40 Landrace TC|TC
279 WSC54 Landrace T|T
280 WSC56 Landrace TC|TC
281 WSC59 Landrace TC|TC
282 WSC68 Landrace TC|TC
283 WSC70 Landrace TC|TC
284 WSC73 Landrace TC|TC
285 WSC81 Landrace TC|TC
286 WSC85 Improved TC|TC
287 WSC91 Landrace TC|TC
288 WSC93 Landrace TC|TC
289 WSC98 Landrace N|N

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825690 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825690 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825690 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p

Genome Browser