sorgsd

Variation ID : sbi33825692

Variation Detail

Variation ID	sbi33825692
Type	INDEL
Position	Chr01 46570-46573
Ref /Alleles	GTTT/ GTTTT or GTT or GT or G
MAF	GTT: 0.375
5' Flank	TGACACTCCGAAAAAATCTCTTTGCCGAAT
3' Flank	TTTTTTTTGCACTCAAGTGCAAAAAAAACT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	GTTT\|GTTT
3	107	Improved	N\|N
4	11	Improved	GTT\|GTT
5	110	Improved	GTTT\|GTTT
6	123	Landrace	GT\|GT
7	131	Improved	GTTT\|GTTT
8	132	Improved	GTT\|GTT
9	135	Improved	GTT\|GTT
10	137	Improved	GTT\|GTT
11	138	Improved	GTT\|GTT
12	14	Improved	N\|N
13	140	Improved	N\|N
14	141	Improved	N\|N
15	144	Improved	GTT\|GTT
16	150	Improved	GTT\|GTT
17	154	Improved	GTT\|GTT
18	159	Landrace	N\|N
19	16	Improved	GTTT\|GTTT
20	161	Landrace	GTTT\|GTTT
21	167	Improved	GTTT\|GTTT
22	168	Improved	GTTT\|GTTT
23	170	Improved	GTTT\|GTTT
24	173	Improved	GTT\|GTT
25	175	Improved	GTT\|GTT
26	176	Improved	N\|N
27	182	Landrace	GTT\|GTT
28	186	Improved	N\|N
29	190	Improved	GTTT\|GTTT
30	192	Improved	GTTT\|GTTT
31	194	Improved	GTT\|GTT
32	195	Improved	GTT\|GTT
33	197	Improved	N\|N
34	J22	Landrace	GTT\|GTT
35	J26	Landrace	GTTT\|GTTT
36	J5	Landrace	GTTT\|GTT
37	J50	Landrace	GTTT\|GTTT
38	2001	Landrace	N\|N
39	2005	Improved	GTT\|GTT
40	2008	Improved	N\|N
41	2009	Landrace	GTTT\|GTTT
42	201	Improved	N\|N
43	2010	Landrace	GTT\|GTT
44	2016	Improved	N\|N
45	2019	Improved	GTTT\|GTTT
46	202	Improved	GTTT\|GTTT
47	2021	Improved	GTT\|GTT
48	2023	Improved	N\|N
49	2026	Improved	GTTT\|GTTT
50	2029	Improved	GTT\|GTT
51	2030	Landrace	N\|N
52	2031	Landrace	GTTT\|GTTT
53	2036	Improved	N\|N
54	2037	Improved	GTT\|GTT
55	2038	Improved	GTTT\|GTTT
56	2039	Improved	GTTT\|GTT
57	204	Improved	GTTT\|GTT
58	2042	Improved	GTTT\|GTTT
59	2043	Improved	GTTT\|GTTT
60	2048	Improved	N\|N
61	2049	Improved	GTTT\|GTTT
62	205	Improved	N\|N
63	2050	Improved	N\|N
64	2052	Improved	GTTT\|GTTT
65	2054	Improved	GTT\|GTT
66	2056	Improved	GTTTT\|GTTTT
67	2059	Improved	GTTT\|GTTT
68	206	Improved	GTTT\|GTTT
69	2064	Improved	GTT\|GTT
70	2065	Improved	GTTT\|GTTT
71	2067	Improved	N\|N
72	2068	Improved	GTT\|GTT
73	2069	Improved	GTT\|GTT
74	2071	Improved	GTT\|GTT
75	2074	Improved	GTT\|GTT
76	2075	Improved	GTTT\|GTTT
77	2076	Improved	GTTT\|GTTT
78	2080	Improved	GTT\|GTT
79	2081	Improved	N\|N
80	2082	Improved	GTT\|GTT
81	2086	Improved	GTT\|GTT
82	2088	Improved	GTTT\|GTTT
83	260	Wild sorghum	N\|N
84	261	Improved	GTTT\|GTTT
85	262	Improved	GTT\|GTT
86	263	Improved	GTTT\|GTTT
87	286	Improved	GTTT\|GTTT
88	29	Improved	GTT\|GTT
89	3	Improved	GTTT\|GTTT
90	302546	S.propinquum	N\|N
91	31	Improved	GTT\|GTT
92	32	Improved	GTTT\|GTTT
93	34	Improved	N\|N
94	346	Landrace	GTTT\|GTTT
95	348	Wild sorghum	GTTTT\|GTTTT
96	353	Wild sorghum	GTT\|GTT
97	355	Wild sorghum	GTT\|GTT
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	N\|N
100	367	Landrace	N\|N
101	s37	S.propinquum	GTTTT\|GTTTT
102	s38	S.propinquum	GTTTT\|GTTTT
103	370	Landrace	N\|N
104	377	Wild sorghum	GT\|GT
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	N\|N
107	40	Improved	GTTT\|GTTT
108	42	Improved	GTT\|GTT
109	43	Improved	GTTT\|GTT
110	45	Improved	GTT\|GTT
111	47	Improved	GTTT\|GTTT
112	48	Improved	GTT\|GTT
113	51	Improved	GTT\|GTT
114	53	Improved	GTT\|GTT
115	56	Improved	GTTT\|GTTT
116	61	Improved	GTTT\|GTTT
117	62	Improved	GTTT\|GTTT
118	66	Landrace	N\|N
119	67	Improved	GTTT\|GTTT
120	68	Improved	N\|N
121	70	Improved	GTT\|GTT
122	73	Improved	GTTT\|GTTT
123	75	Improved	GTTT\|GTTT
124	88	Improved	GTT\|GTT
125	89	Improved	GTT\|GTT
126	91	Improved	GTTT\|GTTT
127	92	Improved	GTT\|GTT
128	93	Improved	GTTT\|GTTT
129	94	Improved	GTT\|GTT
130	95	Improved	N\|N
131	96	Improved	N\|N
132	97	Improved	GTT\|GTT
133	s1	Improved	GTTT\|GTTT
134	s36	Wild sorghum	GTTT\|GTTT
135	s2	Landrace	GTTT\|GTTT
136	s3	Improved	GTTT\|GTTT
137	s32	Improved	GTTT\|GTTT
138	s43	Weedy	GTTT\|GTTT
139	s40	Landrace	GTTTT\|GTTTT
140	s41	Weedy	GTTTT\|GTTTT
141	s39	Landrace	GTTT\|GTT
142	s42	Landrace	GTT\|GTT
143	s47	Improved	GTTT\|GTTT
144	s5	Landrace	GTT\|GTT
145	GW102	Landrace	GTTT\|GTTT
146	GW103	Landrace	N\|N
147	GW104	Landrace	GTTT\|GTTT
148	GW105	Landrace	GTT\|GTT
149	GW16	Landrace	GTT\|GTT
150	GW2	Landrace	GTTTT\|GTTTT
151	GW34	Landrace	GTTT\|GTT
152	GW37	Landrace	GTT\|GTT
153	GW58	Landrace	GTT\|GTT
154	GW59	Landrace	GTT\|GTT
155	GW9	Landrace	GTT\|GTT
156	s4	Weedy	GTTT\|GTTT
157	s6	Improved	GTTT\|GTTT
158	s7	Landrace	GTTTT\|GTTTT
159	s8	Landrace	GTTT\|GTT
160	s9	Landrace	GTTT\|GTTT
161	J101	Landrace	GTT\|GTT
162	J103	Improved	GTTT\|GTTT
163	J112	Landrace	GT\|GT
164	J113	Improved	N\|N
165	J129	Improved	GTTT\|GTTT
166	J130	Improved	GTTTT\|GTTTT
167	J136	Improved	N\|N
168	J152	Improved	GTTT\|GTTT
169	J2	Landrace	GTTT\|GTTT
170	J20	Landrace	GTTT\|GTTT
171	J4	Landrace	GTTT\|GTTT
172	J42	Landrace	N\|N
173	J44	Landrace	GTTT\|GTTT
174	J49	Landrace	N\|N
175	J52	Landrace	N\|N
176	J53	Landrace	GTT\|GTT
177	J54	Landrace	GTT\|GTT
178	J57	Landrace	GTTT\|GTTT
179	J59	Landrace	GTTT\|GTTT
180	J64	Landrace	GTTT\|GTTT
181	J66	Landrace	GTTT\|GTTT
182	J67	Landrace	GTTT\|GTTT
183	J69	Landrace	GTTT\|GTTT
184	J87	Landrace	GTT\|GTT
185	J99	Landrace	GTTT\|GTTT
186	s45	Landrace	GTTT\|GTTT
187	s11	Improved	GTTT\|GTTT
188	s10	Improved	GTTTT\|GTTTT
189	s46	Improved	GTTT\|GTTT
190	s12	Improved	GTTT\|GTTT
191	s13	Landrace	GTTT\|GTTT
192	MHMD	Landrace	GT\|GT
193	s14	Improved	GTTT\|GTTT
194	s15	Improved	GTTT\|GTTT
195	s34	Weedy	GT\|GT
196	s33	Wild sorghum	GTTTT\|GTTTT
197	s21	Wild sorghum	GTTT\|GTTT
198	s16	Wild sorghum	GTTT\|GTTT
199	s44	Improved	GTTT\|GTTT
200	s35	Landrace	GTTT\|GTTT
201	s31	Wild sorghum	GTTT\|GTTT
202	s17	Improved	GTTT\|GTTT
203	s18	Improved	GTTT\|GTTT
204	s20	Improved	GTTT\|GTTT
205	s19	Improved	GTTT\|GTTT
206	s22	Landrace	GTT\|GTT
207	s23	Landrace	GTTT\|GTT
208	s24	Landrace	GT\|G
209	s25	Landrace	GTTT\|GTTT
210	s26	Landrace	GTT\|GTT
211	s27	Landrace	GTT\|GTT
212	s28	Landrace	GTTT\|GTTT
213	s29	Landrace	GTTT\|GTT
214	s30	Landrace	GTTT\|GTTT
215	SL25	Wild sorghum	GTTT\|GTTT
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	GTT\|GTT
218	SL109	Wild sorghum	GTT\|GTT
219	SL12	Wild sorghum	GT\|GT
220	SL129	Wild sorghum	N\|N
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	N\|N
223	SL136	Wild sorghum	GTT\|G
224	SL137	Wild sorghum	GTTT\|GTTTT
225	SL138	Wild sorghum	N\|N
226	SL140	Wild sorghum	GTT\|GTT
227	SL141	Wild sorghum	GT\|GT
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	GT\|GT
230	SL32	Wild sorghum	G\|G
231	SL35	Wild sorghum	GTTT\|GTTT
232	SL36	Wild sorghum	GT\|GT
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	GTT\|GTT
236	SL43	Wild sorghum	GTTT\|GTTT
237	SL47	Wild sorghum	N\|N
238	SL49	Wild sorghum	N\|N
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	GT\|GT
241	SL62	Wild sorghum	GTT\|GTT
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	GTTT\|GTT
244	s48	Improved	GTTT\|GTTT
245	Tu13	Wild sorghum	GTTT\|GTTT
246	Tu14	Wild sorghum	N\|N
247	Tu30	Wild sorghum	GTT\|GTT
248	Tu5	Wild sorghum	GT\|GT
249	WSC5	Landrace	GTTT\|GTT
250	WSC15	Landrace	GTT\|GTT
251	WSC19	Landrace	GTTT\|GTTT
252	WSC30	Landrace	GTTTT\|GTTTT
253	WSC52	Landrace	GTTTT\|GTTTT
254	WSC6	Landrace	GTT\|GTT
255	WSC61	Landrace	GTTT\|GTTT
256	WSC71	Improved	GTTT\|GTTT
257	WSC72	Landrace	GTTT\|GTTT
258	WSC79	Landrace	GTTT\|GTT
259	WSC94	Landrace	N\|N
260	WSC99	Landrace	GTT\|GTT
261	WSC100	Landrace	GTT\|GTT
262	WSC104	Landrace	GTTT\|GTT
263	WSC105	Landrace	N\|N
264	WSC12	Landrace	GTTT\|GTTT
265	WSC13	Landrace	GTTT\|GTTT
266	WSC16	Landrace	GTT\|GTT
267	WSC17	Landrace	GTTT\|GTTT
268	WSC18	Landrace	GTTT\|GTTT
269	WSC20	Landrace	GTTT\|GTTT
270	WSC24	Landrace	GTTT\|GTTT
271	WSC25	Landrace	GTT\|GTT
272	WSC29	Landrace	GTT\|GTT
273	WSC31	Landrace	N\|N
274	WSC32	Landrace	GT\|GT
275	WSC34	Landrace	GTTTT\|GTTTT
276	WSC38	Landrace	N\|N
277	WSC39	Improved	GTTT\|GTTT
278	WSC40	Landrace	GTTTT\|GTTTT
279	WSC54	Landrace	GTT\|GTT
280	WSC56	Landrace	GTT\|GTT
281	WSC59	Landrace	GTT\|GTT
282	WSC68	Landrace	GTTT\|GTTT
283	WSC70	Landrace	GTTT\|GTTT
284	WSC73	Landrace	GTTT\|GTTT
285	WSC81	Landrace	GTT\|GTT
286	WSC85	Improved	GTT\|GTT
287	WSC91	Landrace	GTT\|GTT
288	WSC93	Landrace	GTT\|GTT
289	WSC98	Landrace	GTT\|GTT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825692	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

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