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BioCode
a repository archiving codes for bioinformatics tools
Differential network
Gene network data
Gene network inference
Protein-protein interaction data
Protein-protein interaction prediction
Metabolic network data
Metabolic network analysis
Gene regulatory network inference
Gene regulatory network data
Host-pathogen interaction data
Host-pathogen interaction inference
Signaling pathways
Phosphorylation network data
Kinase-substrate relationship inference
Module extraction
Network alignment
Subnetwork search
Network motif detection
Network simulation
Driver pathway detection
Genotype network inference
Network visualization
Interaction confidence scoring
Intercellular signaling data
Pathway crosstalk network prediction
Signaling pathway crosstalk data
Synthetic lethality prediction
Protein complex prediction
De novo network enrichment
Isoform-level network modeling
Network analysis
Cell cycle
Cell deaths
14-3-3-binding phosphosite prediction
Centrality exploration
Ubiquitin-mediated signalling
Multi-omic data integration
miRNA regulatory modules inference
Deregulated subnetwork detection
Protein similarity network generation
Other tools
Gap filling