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BioCode
a repository archiving codes for bioinformatics tools
Experimental design
Quality control
Spliced read alignment
De novo transcriptome assembly
Assembly evaluation
Read realignment
Read count
Transcript quantification
Transposable element expression
Normalization/differential expression
Alternative splicing
Gene fusion detection
Driver gene fusion prediction
Gene prediction
Sex-linked gene detection
Transcriptome annotation
Variant detection
Allele-specific expression
Circular RNA detection
RNA editing
HLA genotyping
Alternative polyadenylation
Co-expression network analysis
Gene expression clustering
Gene set analysis
Time course
Differential meta-analysis
Data visualization
Allopolyploidy analysis
Read simulation
Splicing QTL detection
RBP motif enrichment
Other tools
Operon structure prediction