Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

lnCeDB

General information

URL: http://gyanxet-beta.com/lncedb/
Full name: database of human long noncoding RNA acting as competing endogenous RNA
Description: lnCeDB provides a database of human lncRNAs (from GENCODE 19 version) that can potentially act as ceRNAs. The putative mRNA targets of human miRNAs and the targets mapped to AGO clipped regions are collected from TargetScan and StarBase respectively. To find out the likelihood of an lncRNA-mRNA pair for actually being ceRNA, ceRNA score is calculated and the P-value for each ceRNA pair is determined. It houses miRNA targets on 22,286 lncRNAs out of 25,978 lncRNA transcripts in GENCODE 19.
Year founded: 2014
Last update: 2014-06-13
Version: v1.0
Accessibility:
Unaccessible
Country/Region: India

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Indian Association for the Cultivation of Science
Address: Kolkata, West Bengal, India
City: Kolkata
Province/State:
Country/Region: India
Contact name (PI/Team): Jayprokas Chakrabarti
Contact email (PI/Helpdesk): j.chakrabarti@gyanxet.com

Publications

Ranking

All databases:
1034/6274 (83.535%)
Interaction:
199/1052 (81.179%)
1034
Total Rank
102
Citations
10.2
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2015-07-01
Curated by:
Xinyu Zhou [2023-09-14]
Lina Ma [2023-02-17]
Lina Ma [2023-02-14]
[2018-12-01]
[2018-11-30]
[2018-11-29]
Lina Ma [2018-06-13]
Chunlei Yu [2016-04-01]
Zhang Zhang [2016-01-17]
Lina Ma [2015-12-31]
Jian Sang [2015-07-01]