Small Subunit rRNA Modification Database

e.g., human; SARS-CoV-2; lncRNA; single cell; spatial omics; immune; Oryza sativa; European Bioinformatics Institute;China

Database Profile

General information

URL:	http://medlib.med.utah.edu/SSUmods
Full name:
Description:	The Small Subunit rRNA Modification Database provides a listing of reported post-transcriptionally modified nucleosides and sequence sites in small subunit rRNAs from bacteria, archaea and eukarya.
Year founded:	2005
Last update:	2005-01-01
Version:	v1.0
Accessibility:	Unaccessible
Country/Region:	United States

Classification & Tag

Data type:	RNA
Data object:	Animal Archaea Bacteria Fungi Plant
Database category:	Modification
Major species:	NA
Keywords:	rRNA modification

Contact information

University/Institution:	University of Utah
Address:	Salt Lake City, UT 84112, USA
City:	Salt Lake City
Province/State:	UT
Country/Region:	United States
Contact name (PI/Team):	Jef Rozenski
Contact email (PI/Helpdesk):	jef.rozenski@rega.kuleuven.ac.be

Publications


15608163	The Small Subunit rRNA Modification Database. [PMID: 15608163] McCloskey JA, Rozenski J. Abstract The Small Subunit rRNA Modification Database provides a listing of reported post-transcriptionally modified nucleosides and sequence sites in small subunit rRNAs from bacteria, archaea and eukarya. Data are compiled from reports of full or partial rRNA sequences, including RNase T1 oligonucleotide catalogs reported in earlier literature in studies of phylogenetic relatedness. Options for data presentation include full sequence maps, some of which have been assembled by database curators with the aid of contemporary gene sequence data, and tabular forms organized by source organism or chemical identity of the modification. A total of 32 rRNA sequence alignments are provided, annotated with sites of modification and chemical identities of modifications if known, with provision for scrolling full sequences or user-dictated subsequences for comparative viewing for organisms of interest. The database can be accessed through the World Wide Web at http://medlib.med.utah.edu/SSUmods. Nucleic Acids Res. 2005:33(Database issue) \| 43 Citations (from Europe PMC, 2025-03-22)

The Small Subunit rRNA Modification Database. [PMID: 15608163]

McCloskey JA, Rozenski J.

Abstract

The Small Subunit rRNA Modification Database provides a listing of reported post-transcriptionally modified nucleosides and sequence sites in small subunit rRNAs from bacteria, archaea and eukarya. Data are compiled from reports of full or partial rRNA sequences, including RNase T1 oligonucleotide catalogs reported in earlier literature in studies of phylogenetic relatedness. Options for data presentation include full sequence maps, some of which have been assembled by database curators with the aid of contemporary gene sequence data, and tabular forms organized by source organism or chemical identity of the modification. A total of 32 rRNA sequence alignments are provided, annotated with sites of modification and chemical identities of modifications if known, with provision for scrolling full sequences or user-dictated subsequences for comparative viewing for organisms of interest. The database can be accessed through the World Wide Web at http://medlib.med.utah.edu/SSUmods.

Nucleic Acids Res. 2005:33(Database issue) | 43 Citations (from Europe PMC, 2025-03-22)

Showing 1 to 1 of 1 entries

All databases:

3215/6278 (48.805%)

Modification:

199/300 (34%)

3215

Total Rank

Citations

2.158

Community reviews

Not Rated

Data quality & quantity:

Content organization & presentation

System accessibility & reliability:

Word cloud

Related Databases

Citing


Loading...

Cited by


Loading...

Record metadata

Created on: 2015-07-11

Curated by:

Lina Ma [2018-06-13]

Lin Xia [2016-03-28]

Mengwei Li [2016-02-20]

Database Commons
a catalog of worldwide biological databases

a catalog of worldwide biological databases

Database Profile