Integr8


15972013	The Integr8 project--a resource for genomic and proteomic data. [PMID: 15972013] Pruess M, Kersey P, Apweiler R. Abstract Integr8 (http://www.ebi.ac.uk/integr8/) is providing an integration layer for the exploitation of genomic and proteomic data by drawing on databases maintained at major bioinformatics centres in Europe. Main aims are to store the relationships of biological entities to each other and to entries in other databases, to provide a framework that allows for new kinds of data to be integrated, and to offer an entity-centric view of complete genomes and proteomes. Basic tools for data integration comprise the Proteome Analysis database, the International Protein Index (IPI), the Universal Protein sequence archive (UniParc) and the Genome Reviews. Entry points for the Integr8 portal depend on the users entity of interest: from browsing the taxonomy or with a predetermined species of interest, the species page can be used, and a simple search page leads to different applications when looking for certain protein sequences or genes. Customisable statistics data are available from the BioMart application, and pre-prepared data can be downloaded from the FTP site. In Silico Biol. 2005:5(2) \| 18 Citations (from Europe PMC, 2025-03-15)
15608201	Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. [PMID: 15608201] Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, Mclaren P, Reimholz B, Duret L, Penel S, Reuter I, Apweiler R. Abstract Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM. Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8. Nucleic Acids Res. 2005:33(Database issue) \| 89 Citations (from Europe PMC, 2025-03-15)

The Integr8 project--a resource for genomic and proteomic data. [PMID: 15972013]

Pruess M, Kersey P, Apweiler R.

Integr8 (http://www.ebi.ac.uk/integr8/) is providing an integration layer for the exploitation of genomic and proteomic data by drawing on databases maintained at major bioinformatics centres in Europe. Main aims are to store the relationships of biological entities to each other and to entries in other databases, to provide a framework that allows for new kinds of data to be integrated, and to offer an entity-centric view of complete genomes and proteomes. Basic tools for data integration comprise the Proteome Analysis database, the International Protein Index (IPI), the Universal Protein sequence archive (UniParc) and the Genome Reviews. Entry points for the Integr8 portal depend on the users entity of interest: from browsing the taxonomy or with a predetermined species of interest, the species page can be used, and a simple search page leads to different applications when looking for certain protein sequences or genes. Customisable statistics data are available from the BioMart application, and pre-prepared data can be downloaded from the FTP site.

In Silico Biol. 2005:5(2) | 18 Citations (from Europe PMC, 2025-03-15)

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. [PMID: 15608201]

Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, Mclaren P, Reimholz B, Duret L, Penel S, Reuter I, Apweiler R.

Abstract

Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM. Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8.

Nucleic Acids Res. 2005:33(Database issue) | 89 Citations (from Europe PMC, 2025-03-15)

URL:	http://www.ebi.ac.uk/integr8
Full name:
Description:	Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism.
Year founded:	2005
Last update:	2012-07-23
Version:	v1.0
Accessibility:	Unaccessible
Country/Region:	United Kingdom

Data type:	DNA Protein
Data object:	NA
Database category:	Gene genome and annotation
Major species:	NA
Keywords:	genome proteome

University/Institution:	European Bioinformatics Institute
Address:	Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD
City:	Cambridge
Province/State:
Country/Region:	United Kingdom
Contact name (PI/Team):	Paul Kersey
Contact email (PI/Helpdesk):	pkersey@ebi.ac.uk

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Database Commons a catalog of worldwide biological databases