ASRP


17999994	Update of ASRP: the Arabidopsis Small RNA Project database. [PMID: 17999994] Backman TW, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, Fahlgren N, Givan SA, Carrington JC, Kasschau KD. Abstract Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of increased data, numerous improvements and updates have been made to ASRP, including new ways to access data, more efficient algorithms for handling data, and increased integration with community-wide resources. New search and visualization tools have also been developed to improve access to small RNA classes and their targets. ASRP is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu/db/. Nucleic Acids Res. 2008:36(Database issue) \| 53 Citations (from Europe PMC, 2025-03-29)
15608278	ASRP: the Arabidopsis Small RNA Project Database. [PMID: 15608278] Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD. Abstract Eukaryotes produce functionally diverse classes of small RNAs (20-25 nt). These include microRNAs (miRNAs), which act as regulatory factors during growth and development, and short-interfering RNAs (siRNAs), which function in several epigenetic and post-transcriptional silencing systems. The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the major classes of endogenous small RNAs in plants. The ASRP database provides a repository for sequences of small RNAs cloned from various Arabidopsis genotypes and tissues. Version 3.0 of the database contains 1920 unique sequences, with tools to assist in miRNA and siRNA identification and analysis. The comprehensive database is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu. Nucleic Acids Res. 2005:33(Database issue) \| 130 Citations (from Europe PMC, 2025-03-29)

Update of ASRP: the Arabidopsis Small RNA Project database. [PMID: 17999994]

Backman TW, Sullivan CM, Cumbie JS, Miller ZA, Chapman EJ, Fahlgren N, Givan SA, Carrington JC, Kasschau KD.

Development of the Arabidopsis Small RNA Project (ASRP) Database, which provides information and tools for the analysis of microRNA, endogenous siRNA and other small RNA-related features, has been driven by the introduction of high-throughput sequencing technology. To accommodate the demands of increased data, numerous improvements and updates have been made to ASRP, including new ways to access data, more efficient algorithms for handling data, and increased integration with community-wide resources. New search and visualization tools have also been developed to improve access to small RNA classes and their targets. ASRP is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu/db/.

Nucleic Acids Res. 2008:36(Database issue) | 53 Citations (from Europe PMC, 2025-03-29)

ASRP: the Arabidopsis Small RNA Project Database. [PMID: 15608278]

Gustafson AM, Allen E, Givan S, Smith D, Carrington JC, Kasschau KD.

Abstract

Eukaryotes produce functionally diverse classes of small RNAs (20-25 nt). These include microRNAs (miRNAs), which act as regulatory factors during growth and development, and short-interfering RNAs (siRNAs), which function in several epigenetic and post-transcriptional silencing systems. The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the major classes of endogenous small RNAs in plants. The ASRP database provides a repository for sequences of small RNAs cloned from various Arabidopsis genotypes and tissues. Version 3.0 of the database contains 1920 unique sequences, with tools to assist in miRNA and siRNA identification and analysis. The comprehensive database is publicly available through a web interface at http://asrp.cgrb.oregonstate.edu.

Nucleic Acids Res. 2005:33(Database issue) | 130 Citations (from Europe PMC, 2025-03-29)

URL:	http://asrp.cgrb.oregonstate.edu
Full name:	Arabidopsis Small RNA Project Database
Description:	The Arabidopsis Small RNA Project (ASRP) seeks to characterize and functionally analyze the major classes of endogenous small RNAs in plants.
Year founded:	2005
Last update:
Version:
Accessibility:	Unaccessible
Country/Region:	United States

Data type:	RNA
Data object:	Plant
Database category:	Genotype phenotype and variation Modification
Major species:	Arabidopsis thaliana
Keywords:	miRNA siRNA small RNA

University/Institution:	Oregon State University
Address:	Corvallis, OR 97331, USA
City:	Corvallis
Province/State:	OR
Country/Region:	United States
Contact name (PI/Team):	Kristin D. Kasschau
Contact email (PI/Helpdesk):	kasschau@cgrb.oregonstate.edu

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Database Commons a catalog of worldwide biological databases