ToxoDB


18003657	ToxoDB: an integrated Toxoplasma gondii database resource. [PMID: 18003657] Gajria B, Bahl A, Brestelli J, Dommer J, Fischer S, Gao X, Heiges M, Iodice J, Kissinger JC, Mackey AJ, Pinney DF, Roos DS, Stoeckert CJ, Wang H, Brunk BP. Abstract ToxoDB (http://ToxoDB.org) is a genome and functional genomic database for the protozoan parasite Toxoplasma gondii. It incorporates the sequence and annotation of the T. gondii ME49 strain, as well as genome sequences for the GT1, VEG and RH (Chr Ia, Chr Ib) strains. Sequence information is integrated with various other genomic-scale data, including community annotation, ESTs, gene expression and proteomics data. ToxoDB has matured significantly since its initial release. Here we outline the numerous updates with respect to the data and increased functionality available on the website. Nucleic Acids Res. 2008:36(Database issue) \| 313 Citations (from Europe PMC, 2025-03-29)
12519989	ToxoDB: accessing the Toxoplasma gondii genome. [PMID: 12519989] Kissinger JC, Gajria B, Li L, Paulsen IT, Roos DS. Abstract ToxoDB (http://ToxoDB.org) provides a genome resource for the protozoan parasite Toxoplasma gondii. Several sequencing projects devoted to T. gondii have been completed or are in progress: an EST project (http://genome.wustl.edu/est/index.php?toxoplasma=1), a BAC clone end-sequencing project (http://www.sanger.ac.uk/Projects/T_gondii/) and an 8X random shotgun genomic sequencing project (http://www.tigr.org/tdb/e2k1/tga1/). ToxoDB was designed to provide a central point of access for all available T. gondii data, and a variety of data mining tools useful for the analysis of unfinished, un-annotated draft sequence during the early phases of the genome project. In later stages, as more and different types of data become available (microarray, proteomic, SNP, QTL, etc.) the database will provide an integrated data analysis platform facilitating user-defined queries across the different data types. Nucleic Acids Res. 2003:31(1) \| 127 Citations (from Europe PMC, 2025-03-29)

ToxoDB: an integrated Toxoplasma gondii database resource. [PMID: 18003657]

Gajria B, Bahl A, Brestelli J, Dommer J, Fischer S, Gao X, Heiges M, Iodice J, Kissinger JC, Mackey AJ, Pinney DF, Roos DS, Stoeckert CJ, Wang H, Brunk BP.

Abstract

ToxoDB (http://ToxoDB.org) is a genome and functional genomic database for the protozoan parasite Toxoplasma gondii. It incorporates the sequence and annotation of the T. gondii ME49 strain, as well as genome sequences for the GT1, VEG and RH (Chr Ia, Chr Ib) strains. Sequence information is integrated with various other genomic-scale data, including community annotation, ESTs, gene expression and proteomics data. ToxoDB has matured significantly since its initial release. Here we outline the numerous updates with respect to the data and increased functionality available on the website.

Nucleic Acids Res. 2008:36(Database issue) | 313 Citations (from Europe PMC, 2025-03-29)

ToxoDB: accessing the Toxoplasma gondii genome. [PMID: 12519989]

Kissinger JC, Gajria B, Li L, Paulsen IT, Roos DS.

Abstract

ToxoDB (http://ToxoDB.org) provides a genome resource for the protozoan parasite Toxoplasma gondii. Several sequencing projects devoted to T. gondii have been completed or are in progress: an EST project (http://genome.wustl.edu/est/index.php?toxoplasma=1), a BAC clone end-sequencing project (http://www.sanger.ac.uk/Projects/T_gondii/) and an 8X random shotgun genomic sequencing project (http://www.tigr.org/tdb/e2k1/tga1/). ToxoDB was designed to provide a central point of access for all available T. gondii data, and a variety of data mining tools useful for the analysis of unfinished, un-annotated draft sequence during the early phases of the genome project. In later stages, as more and different types of data become available (microarray, proteomic, SNP, QTL, etc.) the database will provide an integrated data analysis platform facilitating user-defined queries across the different data types.

Nucleic Acids Res. 2003:31(1) | 127 Citations (from Europe PMC, 2025-03-29)

URL:	http://toxodb.org/toxo/
Full name:	Toxoplasma gondii database
Description:	ToxoDB is a genome and functional genomic database for the protozoan parasite Toxoplasma gondii.
Year founded:	2003
Last update:	2015-07-23
Version:	Version 23
Accessibility:	Unaccessible
Country/Region:	United States

Data type:	DNA Protein
Data object:	Animal
Database category:	Gene genome and annotation
Major species:	Toxoplasma gondii
Keywords:	protozoan parasite

University/Institution:	University of Georgia
Address:
City:	Athens
Province/State:	GA
Country/Region:	United States
Contact name (PI/Team):	Jessica C. Kissinger
Contact email (PI/Helpdesk):	jkissing@uga.edu

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Database Commons a catalog of worldwide biological databases