StemBase


19284540	Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. [PMID: 19284540] Sandie R, Palidwor GA, Huska MR, Porter CJ, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Abstract BACKGROUND: Currently one of the largest online repositories for human and mouse stem cell gene expression data, StemBase was first designed as a simple web-interface to DNA microarray data generated by the Canadian Stem Cell Network to facilitate the discovery of gene functions relevant to stem cell control and differentiation. FINDINGS: Since its creation, StemBase has grown in both size and scope into a system with analysis tools that examine either the whole database at once, or slices of data, based on tissue type, cell type or gene of interest. As of September 1, 2008, StemBase contains gene expression data (microarray and Serial Analysis of Gene Expression) from 210 stem cell samples in 60 different experiments. CONCLUSION: StemBase can be used to study gene expression in human and murine stem cells and is available at http://www.stembase.ca. BMC Res Notes. 2009:2() \| 10 Citations (from Europe PMC, 2025-03-29)
18453254	StemBase: a resource for the analysis of stem cell gene expression data. [PMID: 18453254] Porter CJ, Palidwor GA, Sandie R, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Abstract StemBase is a database of gene expression data obtained from stem cells and derivatives mainly from mouse and human using DNA microarrays and Serial Analysis of Gene Expression. Here, we describe this database and indicate ways to use it for the study the expression of particular genes in stem cells or to search for genes with particular expression profiles in stem cells, which could be associated to stem cell function or used as stem cell markers. Methods Mol Biol. 2007:407() \| 18 Citations (from Europe PMC, 2025-03-29)

Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. [PMID: 19284540]

Sandie R, Palidwor GA, Huska MR, Porter CJ, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA.

BACKGROUND: Currently one of the largest online repositories for human and mouse stem cell gene expression data, StemBase was first designed as a simple web-interface to DNA microarray data generated by the Canadian Stem Cell Network to facilitate the discovery of gene functions relevant to stem cell control and differentiation.
FINDINGS: Since its creation, StemBase has grown in both size and scope into a system with analysis tools that examine either the whole database at once, or slices of data, based on tissue type, cell type or gene of interest. As of September 1, 2008, StemBase contains gene expression data (microarray and Serial Analysis of Gene Expression) from 210 stem cell samples in 60 different experiments.
CONCLUSION: StemBase can be used to study gene expression in human and murine stem cells and is available at http://www.stembase.ca.

BMC Res Notes. 2009:2() | 10 Citations (from Europe PMC, 2025-03-29)

StemBase: a resource for the analysis of stem cell gene expression data. [PMID: 18453254]

Porter CJ, Palidwor GA, Sandie R, Krzyzanowski PM, Muro EM, Perez-Iratxeta C, Andrade-Navarro MA.

Abstract

StemBase is a database of gene expression data obtained from stem cells and derivatives mainly from mouse and human using DNA microarrays and Serial Analysis of Gene Expression. Here, we describe this database and indicate ways to use it for the study the expression of particular genes in stem cells or to search for genes with particular expression profiles in stem cells, which could be associated to stem cell function or used as stem cell markers.

Methods Mol Biol. 2007:407() | 18 Citations (from Europe PMC, 2025-03-29)

URL:	http://www.stembase.ca
Full name:	a tool to study gene expression in human and murine stem cells
Description:	StemBase is a database of gene expression data obtained from stem cells and derivatives mainly from mouse and human using DNA microarrays and Serial Analysis of Gene Expression.
Year founded:	2007
Last update:	2009
Version:
Accessibility:	Accessible
Country/Region:	Canada

Data type:	DNA
Data object:	Animal
Database category:	Expression Gene genome and annotation Interaction
Major species:	Homo sapiens Mus musculus
Keywords:	stem cells

University/Institution:	Ottawa Health Research Institute
Address:
City:
Province/State:
Country/Region:	Canada
Contact name (PI/Team):	Miguel A Andrade-Navarro
Contact email (PI/Helpdesk):	miguel.andrade@mdc-berlin.de

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Database Commons a catalog of worldwide biological databases