DBMLoc


18304364	DBMLoc: a Database of proteins with multiple subcellular localizations. [PMID: 18304364] Zhang S, Xia X, Shen J, Zhou Y, Sun Z. Abstract BACKGROUND: Subcellular localization information is one of the key features to protein function research. Locating to a specific subcellular compartment is essential for a protein to function efficiently. Proteins which have multiple localizations will provide more clues. This kind of proteins may take a high proportion, even more than 35%. DESCRIPTION: We have developed a database of proteins with multiple subcellular localizations, designated DBMLoc. The initial release contains 10470 multiple subcellular localization-annotated entries. Annotations are collected from primary protein databases, specific subcellular localization databases and literature texts. All the protein entries are cross-referenced to GO annotations and SwissProt. Protein-protein interactions are also annotated. They are classified into 12 large subcellular localization categories based on GO hierarchical architecture and original annotations. Download, search and sequence BLAST tools are also available on the website. CONCLUSION: DBMLoc is a protein database which collects proteins with more than one subcellular localization annotation. It is freely accessed at http://www.bioinfo.tsinghua.edu.cn/DBMLoc/index.htm. BMC Bioinformatics. 2008:9() \| 32 Citations (from Europe PMC, 2025-03-29)

DBMLoc: a Database of proteins with multiple subcellular localizations. [PMID: 18304364]

Zhang S, Xia X, Shen J, Zhou Y, Sun Z.

BACKGROUND: Subcellular localization information is one of the key features to protein function research. Locating to a specific subcellular compartment is essential for a protein to function efficiently. Proteins which have multiple localizations will provide more clues. This kind of proteins may take a high proportion, even more than 35%.
DESCRIPTION: We have developed a database of proteins with multiple subcellular localizations, designated DBMLoc. The initial release contains 10470 multiple subcellular localization-annotated entries. Annotations are collected from primary protein databases, specific subcellular localization databases and literature texts. All the protein entries are cross-referenced to GO annotations and SwissProt. Protein-protein interactions are also annotated. They are classified into 12 large subcellular localization categories based on GO hierarchical architecture and original annotations. Download, search and sequence BLAST tools are also available on the website.
CONCLUSION: DBMLoc is a protein database which collects proteins with more than one subcellular localization annotation. It is freely accessed at http://www.bioinfo.tsinghua.edu.cn/DBMLoc/index.htm.

BMC Bioinformatics. 2008:9() | 32 Citations (from Europe PMC, 2025-03-29)

URL:	http://www.bioinfo.tsinghua.edu.cn/DBMLoc/index
Full name:
Description:	We have developed a database of proteins with multiple subcellular localizations, designated DBMLoc. The initial release contains 10470 multiple subcellular localization-annotated entries. Annotations are collected from primary protein databases, specific subcellular localization databases and literature texts. All the protein entries are cross-referenced to GO annotations and SwissProt. Protein-protein interactions are also annotated. They are classified into 12 large subcellular localization categories based on GO hierarchical architecture and original annotations. Download, search and sequence BLAST tools are also available on the website
Year founded:	2008
Last update:
Version:
Accessibility:	Unaccessible
Country/Region:	China

Data type:	Protein
Data object:	Animal Bacteria Fungi Plant
Database category:	Expression Interaction
Major species:	NA
Keywords:	subcellular localization protein

University/Institution:	Tsinghua University
Address:
City:	Beijing
Province/State:	Beijing
Country/Region:	China
Contact name (PI/Team):	Zhang S
Contact email (PI/Helpdesk):	zhangsong04@mails.tsinghua.edu.cn

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Database Commons a catalog of worldwide biological databases