Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

msdb

General information

URL: http://tdb.ccmb.res.in/msdb
Full name: MicroSatellite DataBase
Description: MicroSatellite DataBase (MSDB) is a collection of simple sequence repeats (SSRs), also known as microsatellites. SSRs are short tandem repeats of 1 to 6 base long motifs present in all genomes, particularly in Eukaryotes. Many studies have pointed to the role of SSRs in gene regulation, and have shown that SSRs can act as transcription factor binding sites, enhancer-blockers, insulators etc., making them an interesting class of DNA elements to study. MSDB aims to be the go-to resource for both accessing as well as visualizing SSR-related information.
Year founded: 2017
Last update:
Version:
Accessibility:
Accessible
Country/Region: India

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Centre for Cellular and Molecular Biology
Address: Centre for Cellular and Molecular Biology, Hyderabad, India
City: hyderabad
Province/State:
Country/Region: India
Contact name (PI/Team): devia tej sowpati
Contact email (PI/Helpdesk): tej@ccmb.res.in

Publications

Ranking

All databases:
3122/6278 (50.287%)
Gene genome and annotation:
948/1785 (46.947%)
Expression:
634/1214 (47.858%)
3122
Total Rank
16
Citations
2.286
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Created with Highcharts 10.0.0msdbSSRsdataspeciesSimpleSequenceRepeatsMicrosatellitesgenomesDatabasemultipleMSDBusingMSDB:Comprehensivealsoknownshorttandemrepeats1-6?ntmotifspresentparticularlyeukaryotesBesidesusefulnessgenomemarkersshownperformimportantregulatoryfunctionsvariationslengthcodingregionslinkedseveraldisordershumansshowtaxon-specificenrichmenteukaryoticmayfunctionalMicrosatellitecollectionof?>650million6893includingBacteriaArchaeaFungiPlantsAnimalsdatabasefarexhaustiveresourceaccessanalyzeSSRadditionexploringcustomizabletabularformatuserscanviewcomparesimultaneouslyinteractiveplottingsystemdevelopedDjangoframeworkMySQLfreelyavailablehttp://tdb.ccmb.res.in/msdb.

Related Databases

Record metadata

Created on: 2018-01-28
Curated by:
huma shireen [2018-04-10]
Yang Zhang [2018-01-28]