Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

MPID

General information

URL: http://surya.bic.nus.edu.sg/mpid
Full name: MHC-Peptide Interaction Database
Description: To understand the structural principles governing MHC-specific peptide recognition and binding, we have developed the MHC-Peptide Interaction Database (MPID), containing sequence-structure-function information. MPID (version 1.2) contains curated x-ray crystallographic data on 86 MHC peptide complexes, with precomputed interaction parameters (solvent accessibility, hydrogen bonds, gap volume and gap index).
Year founded: 2003
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: Singapore

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: National University of Singapore
Address: Department of Biochemistry, National University of Singapore, Singapore 119260.
City: Singapore
Province/State:
Country/Region: Singapore
Contact name (PI/Team): Shoba Ranganathan
Contact email (PI/Helpdesk): shoba@bic.nus.edu.sg

Publications

Ranking

All databases:
4923/6275 (21.562%)
Interaction:
866/1052 (17.776%)
4923
Total Rank
17
Citations
0.81
z-index

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Word cloud

Created with Highcharts 10.0.0MPIDMHCbindingpeptidesMHC-PeptideInteractionDatabasesequence-structure-functioninformationpeptidegapstructuralMPID:moleculesSUMMARY:BindingshortantigenicMajorhistocompatibilitycomplexproteinsfirststepT-cellmediatedimmuneresponseunderstandprinciplesgoverningMHC-specificrecognitiondevelopedcontainingversion1.2containscuratedx-raycrystallographicdata86complexesprecomputedinteractionparameterssolventaccessibilityhydrogenbondsvolumeindexuser-friendlywebinterfacequerytoolswillfacilitatedevelopmentpredictivealgorithmsMHC-peptideviewpoint.AVAILABILITY:Freelyaccessiblehttp://surya.bic.nus.edu.sg/mpid.

Related Databases

Citing

Record metadata

Created on: 2018-02-09
Curated by:
Mengyu Pan [2018-09-21]
Qi Wang [2018-02-23]
Yang Zhang [2018-02-09]