Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

LncATLAS

General information

URL: http://lncatlas.crg.eu/
Full name: database for subcellular localization of long noncoding RNAs
Description: LncATLAS is an easy-to-use web-based visualization tool to obtain quantitative information about subcellular localization of lncRNAs in human cells. Altogether, 6,768 GENCODE-annotated lncRNAs are represented across various compartments of 15 cell lines. In addition, relative concentration index (RCI) is introduced as a useful measure of localization derived from ensemble RNA-seq measurements.
Year founded: 2017
Last update: 2017
Version: v1.0
Accessibility:
Accessible
Country/Region: Switzerland

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Bern
Address: Department of Clinical Research, University of Bern, 3008 Bern, Switzerland.
City: Bern
Province/State:
Country/Region: Switzerland
Contact name (PI/Team): Rory Johnson
Contact email (PI/Helpdesk): rory.johnson@dbmr.unibe.ch

Publications

Ranking

All databases:
473/6274 (92.477%)
Expression:
72/1213 (94.147%)
473
Total Rank
168
Citations
24
z-index

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Not Rated
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Record metadata

Created on: 2018-06-04
Curated by:
Xinyu Zhou [2023-09-19]
Xinyu Zhou [2023-09-14]
Lina Ma [2023-03-10]
Lina Ma [2023-02-17]
[2018-12-03]
Mengyu Pan [2018-09-20]
Lina Ma [2018-06-04]