Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

MSGP

General information

URL: https://msgp.pt
Full name: Mammalian Stress Granules Proteome
Description: MSGP is an open access database of all the proteins described so far as components of stress granules. Details gathered from public databases, such as the molecular function, the cell types in which they were detected, the type of stress stimuli used to induce SG formation and the reference of the study describing the recruitment of the component to SGs. Expression levels in the context of different neurodegenerative diseases were also obtained.
Year founded: 2019
Last update:
Version:
Accessibility:
Accessible
Country/Region: Portugal

Classification & Tag

Data type:
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: University of Algarve
Address: Department of Biomedical Sciences and Medicine, University of Algarve, Faro, Portugal
City:
Province/State:
Country/Region: Portugal
Contact name (PI/Team): Clévio Nóbrega
Contact email (PI/Helpdesk): cdnobrega@ualg.pt

Publications

30820574
MSGP: the first database of the protein components of the mammalian stress granules. [PMID: 30820574]
Catarina Nunes, Isa Mestre, Adriana Marcelo, Rebekah Koppenol, Carlos A Matos, Clévio Nóbrega

In response to different stress stimuli, cells transiently form stress granules (SGs) in order to protect themselves and re-establish homeostasis. Besides these important cellular functions, SGs are now being implicated in different human diseases, such as neurodegenerative disorders and cancer. SGs are ribonucleoprotein granules, constituted by a variety of different types of proteins, RNAs, factors involved in translation and signaling molecules, being capable of regulating mRNA translation to facilitate stress response. However, until now a complete list of the SG components has not been available. Therefore, we aimer at identifying and linting in an open access database all the proteins described so far as components of SGs. The identification was made through an exhaustive search of studies listed in PubMed and double checked. Moreover, for each identified protein several details were also gathered from public databases, such as the molecular function, the cell types in which they were detected, the type of stress stimuli used to induce SG formation and the reference of the study describing the recruitment of the component to SGs. Expression levels in the context of different neurodegenerative diseases were also obtained and are also described in the database. The Mammalian Stress Granules Proteome is available at https://msgp.pt/, being a new and unique open access online database, the first to list all the protein components of the SGs identified so far. The database constitutes an important and valuable tool for researchers in this research area of growing interest.

Database (Oxford). 2019:2019() | 55 Citations (from Europe PMC, 2026-02-21)

Ranking

All databases:
1630/6932 (76.5%)
Expression:
331/1361 (75.753%)
Interaction:
318/1200 (73.583%)
Literature:
152/577 (73.83%)
1630
Total Rank
52
Citations
7.429
z-index

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Record metadata

Created on: 2019-09-25
Curated by:
Ghulam Abbas [2019-10-22]
furrukh mehmood [2019-09-25]