Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

REPIC

General information

URL: https://repicmod.uchicago.edu/repic
Full name:
Description: The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available m6A-seq and MeRIP-seq data . These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine (m6A) modification sites by specific cell lines or tissue types. In addition, it integrates m6A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of m6A methylation sites, histone modification sites, and chromatin accessibility regions.
Year founded: 2020
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
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Major species:
Keywords:

Contact information

University/Institution: University of Chicago
Address: Section of Genetic Medicine, Department of Medicine, The University of Chicago, Chicago, IL, 60637, USA. mengjiechen@uchicago.edu.
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Mengjie Chen
Contact email (PI/Helpdesk): mengjiechen@uchicago.edu

Publications

Ranking

All databases:
768/6274 (87.775%)
Gene genome and annotation:
260/1782 (85.466%)
Modification:
46/300 (85%)
Expression:
131/1213 (89.283%)
768
Total Rank
57
Citations
14.25
z-index

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Record metadata

Created on: 2020-11-07
Curated by:
Lin Liu [2022-08-16]
Lin Liu [2022-08-03]
Lin Liu [2021-03-23]
Chang Liu [2020-11-23]
Yitong Pan [2020-11-07]