| URL: | http://database.liulab.science/dbMTS |
| Full name: | a comprehensive database of putative human microRNA target site (MTS) SNVs and their functional predictions |
| Description: | dbMTS collects all potential SNVs microRNA target seed regions in human 3’UTRs and provides their functional predictions and annotations to facilitate the steps of filtering and prioritizing SNVs from a huge list of all SNVs discovered in a whole exome sequencing (WES) study. Additional functional annotations of the SNVs were also collected in dbMTS including variant consequences by SnpEff, VEP and ANNOVAR, dbSNP variant IDs, GWAS Catalog entries, allele frequencies from various populations, clinical consequences from ClinVar, expression quantitative trait loci (eQTLs) from GTEx, mappability scores etc. |
| Year founded: | 2020 |
| Last update: | 2020-03-30 |
| Version: | 1.0 |
| Accessibility: |
Accessible
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| Country/Region: | United States |
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| University/Institution: | University of South Florida |
| Address: | USF Genomics, College of Public Health, University of South Florida, 3720 Spectrum Boulevard, Suite 304, Tampa, FL 33612‐9415. USA |
| City: | Tampa |
| Province/State: | Florida |
| Country/Region: | United States |
| Contact name (PI/Team): | Xiaoming Liu |
| Contact email (PI/Helpdesk): | xiaomingliu@usf.edu |