Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

tRFTar

General information

URL: http://www.rnanut.net/tRFTar
Full name: tRNA-derived fragments
Description: The database aontains prediction of tRF-target gene interactions via systemic re-analysis of Argonaute CLIP-seq.
Year founded: 2020
Last update:
Version:
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
RNA
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Peking University
Address: Department of Biomedical Informatics, Department of Physiology and Pathophysiology, Center for Noncoding RNA Medicine, MOE Key Lab of Cardiovascular Sciences, School of Basic Medical Sciences, Peking University, Beijing 100191, China (Q. Cui and Y. Zhou).
City: Beijing
Province/State: Beijing
Country/Region: China
Contact name (PI/Team): YuanZhou
Contact email (PI/Helpdesk): zhouyuanbioinfo@hsc.pku.edu.cn

Publications

Ranking

All databases:
1747/6278 (72.189%)
Interaction:
319/1052 (69.772%)
1747
Total Rank
22
Citations
5.5
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Created with Highcharts 10.0.0TGIstRFstRFTartargetgenestRF-targetregulatoryinteractionsArgonauteviagenesystemicpotentialAGO-mediatedre-analysisCLIP-seqdatasetsidentifiedresultstRFTar:PredictiontRNA-derivedfragmentsdefinitioncleavedtRNAscomprisenovelclasssmallnon-codingRNAsRecentevidencerevealedcanloadedontoAGOfamilyproteinsperformpost-transcriptionalregulationssubstantialHoweverresourcesystematicallyprofilesendperformedcomputationalscreening146crosslinking-immunoprecipitationhigh-throughputsequencing920690121025688predictedsuperiorsignal-to-noiseratiogoodconsistencyorthogonaltechniqueAGO-boundevenlydistributed5'-tRF3'-tRFenrichedcommonlyexpressedalsooverrepresentedtendconservedregionstranscriptsco-expressFilteringconsistentco-expressionsetcontains25281pairsTogetherunveiledextensiveFinally

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Citing
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Record metadata

Created on: 2020-11-10
Curated by:
Lin Liu [2021-02-23]
Ruru Chen [2020-11-27]
Chang Liu [2020-11-10]