Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://fun-science.club/SPACE/
Full name: shiny pan-cancer accessible chromatin explorer
Description: SPACE is a public resource to analyze the chromatin accessibility in a comprehensive and flexible manner. It currently documents 17,638,113,605 peak-mRNA/lncRNA/miRNA pairs and their phenotypic association, and supports visualization of 562,709 accessible DNA elements from 404 patients across 23 cancer types.
Year founded: 2020
Last update: 2020
Version: v1.0
Accessibility:
Manual:
Accessible
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Country/Region: China

Classification & Tag

Data type:
Data object:
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Contact information

University/Institution: Nantong University
Address: Department of Pathogenic Biology, School of Medicine, Nantong University, Jiangsu, 226001, China Laboratory of Medical Science, School of Medicine, Nantong University, Jiangsu, 226001, China
City: Nantong
Province/State: Jiangsu
Country/Region: China
Contact name (PI/Team): Yihui Fan
Contact email (PI/Helpdesk): fanyihui@ntu.edu.cn

Publications

32238917
SPACE: a web server for linking chromatin accessibility with clinical phenotypes and the immune microenvironment in pan-cancer analysis. [PMID: 32238917]
Wu Y, Zhao J, Zhu H, Fan Z, Yuan X, Chen S, Mao R, Fan Y.
Cell Mol Immunol. 2020:17(12) | 1 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
5631/6000 (6.167%)
Gene genome and annotation:
1574/1675 (6.09%)
Expression:
1078/1143 (5.774%)
5631
Total Rank
1
Citations
0.25
z-index

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Record metadata

Created on: 2021-05-18
Curated by:
Lina Ma [2023-04-05]
sun yongqing [2022-08-25]
Yingcheng Wu [2022-02-05]
Dong Zou [2021-06-24]
Zhao Li [2021-06-07]
Zhao Li [2021-05-18]
Yingcheng Wu [2021-05-18]