Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RNAStructuromeDB

General information

URL: https://structurome.bb.iastate.edu/sars-cov-2
Full name:
Description: The SARS-CoV-2 genome is a single stranded RNA molecule approximately 30,000 nucleotides long. The ScanFold program has been used to characterize its RNA folding landscape - highlighting regions of likely structure and function which serve as ideal targets for further analysis.
Year founded: 2021
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Iowa State University
Address:
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Walter N Moss
Contact email (PI/Helpdesk): wmoss@iastate.edu

Publications

Ranking

All databases:
611/6275 (90.279%)
Gene genome and annotation:
217/1785 (87.899%)
Structure:
64/872 (92.775%)
611
Total Rank
55
Citations
18.333
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Created with Highcharts 10.0.0RNASARS-CoV-2RNAStructuromeDBScanFoldstructuredatagenomefunctionalessentiallikelyfacilitateexperimentalresultsviamodelcomparisonsmapstructuromeexplodedthroughouthumanpopulationeffortsgaininsightsbiologytargetvirustherapeuticallyroadmapregionsembeddedreportusedbioinformaticsapproachdeducestructurallandscapehighestlikelihoodrecapitulatepreviously-knownelementsprovidefoldingframeshiftsignalfindgreatlyenrichedunusuallystableevolutionarilyorderedprovideslargereservoirpotentialdrugtargetsRNA-bindingsmallmoleculesResultsenhancedre-analysespublicly-availablegenome-widebiochemicalprobingdatasetsbroadlyagreementmodelsAdditionallyupdatedincorporateconstraintsanalysismodellingapproachesUltimatelyableidentifyeighthighlystructured/conservedmotifsagreewithoutexplicitlyusingmadeavailablepublicdatabaseRNAStructuromeDB:

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Record metadata

Created on: 2022-04-16
Curated by:
Lin Liu [2022-06-03]
Yuxin Qin [2022-05-12]
Yuxin Qin [2022-04-16]