| URL: | http://www.ribocirc.com |
| Full name: | a translatome data-oriented circRNA database |
| Description: | The database was developed which aims to provide: (1) a comprehensive repository of computationally predicted ribosome-associated circRNAs (Ribo-circRNAs); (2) a manually curated collection of experimentally verified translated circRNAs; (3) an evaluation of cross-species conservation of translatable circRNAs; (4) a systematic de novo annotation of putative circRNA-encoded peptides, and (5) a genome browser to visualize the context-specific occupant footprints of circRNAs. Currently the database contains a total of 2,247 computationally predicted translatable circRNAs across 6 different species (Human, Mouse, Rat, C.elegans, Drosophila and Zebrafish) and 216 experimentally verified translated circRNAs. |
| Year founded: | 2021 |
| Last update: | 2020-9-16 |
| Version: | |
| Accessibility: |
Accessible
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| Country/Region: | China |
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| University/Institution: | Sun Yat-Sen University |
| Address: | State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China. |
| City: | Guangzhou |
| Province/State: | Guangdong |
| Country/Region: | China |
| Contact name (PI/Team): | Mingzhe Xie |
| Contact email (PI/Helpdesk): | xiemzh6@gmail.com |
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riboCIRC: a comprehensive database of translatable circRNAs. [PMID: 33685493]
riboCIRC is a translatome data-oriented circRNA database specifically designed for hosting, exploring, analyzing, and visualizing translatable circRNAs from multi-species. The database provides a comprehensive repository of computationally predicted ribosome-associated circRNAs; a manually curated collection of experimentally verified translated circRNAs; an evaluation of cross-species conservation of translatable circRNAs; a systematic de novo annotation of putative circRNA-encoded peptides, including sequence, structure, and function; and a genome browser to visualize the context-specific occupant footprints of circRNAs. It represents a valuable resource for the circRNA research community and is publicly available at http://www.ribocirc.com . |